mRNA_6294 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349732
Unique Name	mRNA_6294
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG1_9STRA)

HSP 1 Score: 758 bits (1958), Expect = 1.340e-264
Identity = 733/733 (100.00%), Postives = 733/733 (100.00%), Query Frame = 3

Query:   27 MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR 2225
            MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR
Sbjct:    1 MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGAAEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGTSLVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLILSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDCFALAAXXXXXXXXXXXXTRHLSGXRALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFSGSTYATAVLSLRALPLPLLLPLLLVAVVPVPSLPXXXXXXXXPLAAAVEERRFSKAIHR 733

[Close]

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF3_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.570e-42
Identity = 96/163 (58.90%), Postives = 107/163 (65.64%), Query Frame = 3

Query:  768 VGSAAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLYWPGAGLPHIPRSLRELHLHLGYADLGPDLVC----------------------------------------GPLTLTSLSFDTGVARLPDSIGTLPTLTALTLHNCSRVT 1136
            V SAAQAFLTKNI +LTL+GPF SDPMLALAA  GAT+NLSSFFRDVKVM+LYWPGAGLPHIPRSLRELHLHLGYAD    +VC                                        GP TLTSLSF +G++ LPDSIG +PTLTALTL +  +VT
Sbjct:   36 VASAAQAFLTKNIGYLTLNGPFGSDPMLALAAAAGATENLSSFFRDVKVMNLYWPGAGLPHIPRSLRELHLHLGYADCSSLVVCALVHVAARSTHPPCLQTGAKMPASTLPAHDAAVPPADGDFGPSTLTSLSFASGISSLPDSIGKVPTLTALTLRDNHQVT 198

[Close]

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Match: A0A836CBL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-12
Identity = 67/195 (34.36%), Postives = 80/195 (41.03%), Query Frame = 3

Query:    6 FCPFFKLMAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVXXXXXXGVQVXXXGMPFXXXXXXXXXXXLGPTLSAGRLTNTTAAGDSGGAAKGDLG-----------GPFGVPLGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEYLFSAYDIAFGGVPFAVWYDSPEHCGHF 557
            FCPFF LMA V CPP+ P G   P  FPG   AP  P              G   XXX  P            +GP+  +      ++A  SG                   GP GV  G            + PPLEPAFCY WNF C P   T R H H D +C YL  A  + +GG  F  W+   ++CGHF
Sbjct:   63 FCPFFDLMATVICPPLPPTGLFPPTIFPGPYVAPPFP-------------IGXXXXXXXXP--------GISSVGPSSPS-----VSSASPSGSVXXXXXXXXXXXXXXXXXGPIGV--GXXXXXXXXXXXXDFPPLEPAFCYFWNFKCSPMRRT-RHHPHKD-DCLYLAPAAAVGWGGPFFGKWF--VDNCGHF 225

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349732 vs. uniprot

BLAST of jgi.p|Trimin1|349732 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CBG1_9STRA	1.340e-264	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBF3_9STRA	2.570e-42	58.90	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CBL1_9STRA	1.600e-12	34.36	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_47	contig	Contig_47:827231..834211 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349732\|estExt_Genemark1.C_Ctg_470113
Hectar predicted targeting category	other localisation
TranscriptId	350054
Track	FilteredModels1
ProteinId	349732

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349732	gene_6294	Tribonema minus UTEX_B_3156	gene	Contig_47 827231..834211 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349732	Trimin1\|349732\|estExt_Genemark1.C_Ctg_470113	Tribonema minus UTEX_B_3156	polypeptide	Contig_47 827348..834185 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6294_9	exon_6294_9	Tribonema minus UTEX_B_3156	exon	Contig_47 827231..827505 -
exon_6294_8	exon_6294_8	Tribonema minus UTEX_B_3156	exon	Contig_47 828717..828939 -
exon_6294_7	exon_6294_7	Tribonema minus UTEX_B_3156	exon	Contig_47 828996..829829 -
exon_6294_6	exon_6294_6	Tribonema minus UTEX_B_3156	exon	Contig_47 829956..830200 -
exon_6294_5	exon_6294_5	Tribonema minus UTEX_B_3156	exon	Contig_47 831500..831642 -
exon_6294_4	exon_6294_4	Tribonema minus UTEX_B_3156	exon	Contig_47 831787..832014 -
exon_6294_3	exon_6294_3	Tribonema minus UTEX_B_3156	exon	Contig_47 833073..833242 -
exon_6294_2	exon_6294_2	Tribonema minus UTEX_B_3156	exon	Contig_47 833359..833426 -
exon_6294_1	exon_6294_1	Tribonema minus UTEX_B_3156	exon	Contig_47 834053..834211 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_6294	UTR3_6294	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_47 827231..827347 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6294	CDS_6294	Tribonema minus UTEX_B_3156	CDS	Contig_47 834053..834185 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_6294	UTR5_6294	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_47 834186..834211 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_47:827231..834211-
coding sequence from alignment at Contig_47:827231..834211-

spliced messenger RNA

>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Trimin1|349732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2345bp|location=Sequence derived from alignment at Contig_47:827231..834211- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCCTTTCTGCCCTTTCTTTAAGCTGATGGCTCCTGTCTTCTGCCCTCCG
GTGGGCCCAAACGGCTTCATCGACCCTCTCTACTTCCCAGGCCGCATCTT
CGCACCCTCCATTCCACCGCTGCCACCGCCACCGGGCGTGCCACCGCCGC
CACCTCCAGGCGTGCAAGTGCCGCCGCCGGGCATGCCGTTCGCGCCGCCG
CCCGCCGTCCCCCCACCGCCGCCACTGGGGCCGACGCTCTCTGCGGGGCG
CCTGACGAACACCACCGCAGCTGGTGACAGCGGGGGGGCAGCGAAGGGGG
ATTTGGGGGGCCCGTTTGGGGTGCCCCTCGGGCCAGGACCCCCCGTCGGC
ATCTTCTCGCCAGTGCTCAACATACCGCCGCTGGAGCCTGCGTTCTGCTA
CCTGTGGAACTTCCTGTGCGTCCCCCCGCCGCACACGGCGCGCGCGCATG
CCCACCTCGACTTCAACTGCGAGTACCTCTTCTCCGCGTACGACATCGCC
TTCGGCGGCGTGCCCTTCGCCGTCTGGTACGACTCCCCTGAGCACTGCGG
CCACTTCCTCGACCACCTGCTCGCCGCCAACGGCGTCAACGTCGCCAAGG
CGCGCGCTACGAGCAACGGCGGCGCCGCTGAGATAGCAGCAGTGCTCGGA
CACTTTGGCGGTAGCATTGGGACCAACAGCACCATGGGGTCACCTGAGCG
TTGTAACATGGGCTGCGGCAGCTGTGGGCGCAAGCTTCGGCGCACCAGCG
TGCAGCGGGCGGGGCGCGTGGGTTCGGCGGCTCAGGCGTTTCTCACCAAA
AACATTGCGCACCTGACGCTCCATGGCCCTTTCGAGTCGGATCCGATGCT
CGCCCTCGCAGCCGGTCTAGGCGCAACGGATAATCTGAGCTCTTTCTTCA
GGGATGTCAAGGTCATGGACCTGTACTGGCCAGGTGCTGGGCTCCCGCAC
ATTCCGCGGTCGCTGCGGGAGCTGCACCTGCACCTGGGCTACGCTGACCT
CGGCCCCGATCTTGTCTGCGGCCCGTTGACGCTGACGTCACTCAGCTTTG
ATACTGGCGTTGCCCGCCTGCCAGACAGCATCGGCACGCTGCCCACGCTC
ACGGCGCTGACGCTGCACAACTGCAGTCGAGTCACCGGCCTGCCGGACAG
TGTTGGCGAGCTGGCTGCGCTCACTACGCTGACGCTGCGCAGCTGCGATC
GGCTCTCAGGCCTGCCCGACAGCATCCGCGGCCTGTCGCAGCTCACCACG
CTGTCGCTGCAAGACTGTATCGGGCTCAGACTCCTGCCGGATTGCATTAG
CGGCCTCACAACTCTGGCAACGCTGGACCTGAGCGGCACTTCGCTTGTTA
GTGTGCCCGAGACCATCGGCGGCTTGCCCGCGCTGACGGCGCTCAACCTA
GACGGCTGCCGCGCTCTCTCGTCGCTGCCTGACAGCCTCGGCAGCCTTAG
CGCGCTGACAACGCTGGGCCTGAGCGGCACTTCACTTGTTAGTGTGCCCA
AGACCATCGGCGGGTTGCCCGCGCTTACAGCGCTCAACCTGGACAGCTGC
AGCGCGCTCGCCCGCCTGCCGGAAAGCCTGGGCAGCCTCGCCACGCTGAC
GACTCTCATCTTGAGTAACTGCGGCGCGCTGACGCGCCTGCCGGAAAGCC
TCGGCAGCCTTGCTGCTCTGGCAACGCTCAACTTGTGCAGATGCAGCGGG
CTCCGGCATCTGCCACACAGCATCGGCGATCTGGCGGCGCTGCTGACGCT
CAACCTTAACGGCTGCGGCAGCCTTCAAGTCCTGCCAGACGCCATCGGTC
GGCTGGCGACGCTGACGGCGCTCCGCCTGAGCTACTGCAGCTCGCTGGAC
TGCTTTGCGCTCGCAGCCCTGCCGGAGACCATGGGCGAGCTGGCAGCACT
GACGACCCGCCACCTGAGCGGCTGCCGAGCACTGACGCGGCTGCCGGAGT
CCATCGGCGAGCTGGCGGCGCTCACGGCCCTCAACCTGTACGCATGCCGA
GCGCTGCCGCAGCTGCCGCGGAGCATTGGCGCGCTGGCCAGCTTCAGCGG
CTCGACATACGCAACTGCCGTGCTGTCACTGCGGGCGCTGCCGCTGCCGC
TGCTGCTGCCGCTGCTGCTGGTGGCAGTGGTGCCGGTGCCGTCGTTGCCG
CCGCCGCCGCCGCTGCTGTTGCTGCCATTGGCTGCTGCAGTCGAAGAGCG
CCGCTTCAGCAAAGCGATCCATCGGTAATCGACCTAGACCCAGTTCTGAA
CGCCGTTGCAAGTGGCAGTGCTCACGCGCTAAACGTTGATGGTGCGCACC
ACCTGCTGCACCACCGCTCTGCAGACGGGGCACTCATTGAACTGC

protein sequence of jgi.p|Trimin1|349732

>Trimin1|349732|estExt_Genemark1.C_Ctg_470113 ID=Trimin1|349732|estExt_Genemark1.C_Ctg_470113|Name=jgi.p|Trimin1|349732|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=734bp
MAPVFCPPVGPNGFIDPLYFPGRIFAPSIPPLPPPPGVPPPPPPGVQVPP
PGMPFAPPPAVPPPPPLGPTLSAGRLTNTTAAGDSGGAAKGDLGGPFGVP
LGPGPPVGIFSPVLNIPPLEPAFCYLWNFLCVPPPHTARAHAHLDFNCEY
LFSAYDIAFGGVPFAVWYDSPEHCGHFLDHLLAANGVNVAKARATSNGGA
AEIAAVLGHFGGSIGTNSTMGSPERCNMGCGSCGRKLRRTSVQRAGRVGS
AAQAFLTKNIAHLTLHGPFESDPMLALAAGLGATDNLSSFFRDVKVMDLY
WPGAGLPHIPRSLRELHLHLGYADLGPDLVCGPLTLTSLSFDTGVARLPD
SIGTLPTLTALTLHNCSRVTGLPDSVGELAALTTLTLRSCDRLSGLPDSI
RGLSQLTTLSLQDCIGLRLLPDCISGLTTLATLDLSGTSLVSVPETIGGL
PALTALNLDGCRALSSLPDSLGSLSALTTLGLSGTSLVSVPKTIGGLPAL
TALNLDSCSALARLPESLGSLATLTTLILSNCGALTRLPESLGSLAALAT
LNLCRCSGLRHLPHSIGDLAALLTLNLNGCGSLQVLPDAIGRLATLTALR
LSYCSSLDCFALAALPETMGELAALTTRHLSGCRALTRLPESIGELAALT
ALNLYACRALPQLPRSIGALASFSGSTYATAVLSLRALPLPLLLPLLLVA
VVPVPSLPPPPPLLLLPLAAAVEERRFSKAIHR*

mRNA from alignment at Contig_47:827231..834211-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Trimin1|349732|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6981bp|location=Sequence derived from alignment at Contig_47:827231..834211- (Tribonema minus UTEX_B_3156 )
ATCCTTTCTGCCCTTTCTTTAAGCTGATGGCTCCTGTCTTCTGCCCTCCG
GTGGGCCCAAACGGCTTCATCGACCCTCTCTACTTCCCAGGCCGCATCTT
CGCACCCTCCATTCCACCGCTGCCACCGCCACCGGGCGTGCCACCGCCGC
CACCTCCAGGTGATACAGAATAGCCTTTCCGCAAGAGAGTCCATGTAGGC
AGCGCCAAGCATGCAACAAACTGTATTTCAGAAATTTTGTCAAGAACATA
GCACAGGTACAGCCGTAGCGGGCAGGGCGTCATGCAGTGGTGATCATTAA
AGCTTTCGCTGACTCATTCTGCTGAAGAATGCACTGCCATTCGCACCAGC
AGTAGCTGCTGGGATAGCAGCGGCGCTGTGTGAAACACAGCCTGCCGTAC
TGTTTCATTGATGGCATGATGAACATTCAAGCTCATGCACTTGTGGTACG
CACTTGTCACGCACCACAGGCAAGTGTTGAAACGCTGCCGCCAGACATGC
CACAGGCAGTTCAGCCGCCGCCACAATGGCCACTGCCGTCTGTGGCGCTG
CTGGGCCAAGATGTTATCCTGACTAGCACACATTCAGCTGACTAGACATT
TGCATCATTCTCCTTTGTTCCACCGCCATACACGCCGCTGGTGCCACAGC
TGCAGACTGCGCAGCGCACACAACTCTTTCAAAACATGATCTCATACTTC
CCTCCATCATGCATGTTTCCCAGTCAAGTATGAATTCTACACCTGTGTCT
CACAGCTGATCTCCCCTTCATCTGATGACACGCAGGCGTGCAAGTGCCGC
CGCCGGGCATGCCGTTCGCGCCGCCGCCCGCCGTCCCCCCACCGCCGCCA
CTGGTCCCCCCCCCGGCCCCTTCTTCCCCCCGCACGGCCCCCCCGACGCC
CCCTTCTCTACCCCCGCCAAACAAACCCCTGTGGACCCCCCAGCTACGCC
CGCGACTCCACGTCCAGAGGGGCCGACGCTCTCTGCGGGGCGCCTGACGA
ACACCACCGCAGCTGGTGACAGCGGGGGGGCAGCGAAGGGGGATTTGGGG
GGCCCGTTTGGGGTGCCCCTCGGGCCAGGACCCCCCGTCGGCATCTTCTC
GCCAGTGCTCAACATACCGCCGCTGGAGCCTGCGTTCTGGTGAGGCGCAC
AATCGCGCGTTGCTCTTGTGTGATATAGAGTGGATCCCTCAAGAGCTGGT
TGATGTATACAACAGCAATCACAGTCGTCCCTCAAGTTTTTCGTGCGCAA
TAACAGCTGCTGTTGGCACCGCATGCTGTGGTAATGCTGCCGTGCCTTCT
GCAGCGTGCAAAGCTTTGCGCGCAGCAGTTGTGTGCACGGCGCCAGCTGC
TAGCGTGGGTGCCTAACTGCAGTAGTGCGCGCAGGTCATACTGGGCCACA
GGGGCCGGCTGCATGCTTCACGGTGAGGTGTTGATGCACACTGCAGCGGC
GACCGCTCAGCACAGGTTCGCTGTGGCACTGCTTCAAGCAGTGCTCCTAA
GCTGTGATGCGGGTCATAAACTTACTTCGAAGTATGAAAGATCAGGGCGG
CGTCCCCCCTCTCCATGCGTTTGCCACGGCGCACACTGTGCTTAAAAGAG
AACACACTGCTCGCTGCAGTGCTCTGCAAACCAGTCGCTAGAACAATGTG
CGCATCAAATTGTACCCATGTATGGCGCCAATAGGTGGCGGCTCTTCAGC
GTGTGTGTGCAGGTAAACATGCCTGCAGAACTTCAACTTGAAGGTGGCCG
TTTAATAAGGCTCGAACACCGGCCATGCAACAACTCCACCACTTCTGCCC
CCATTATGACGAGCGCTGCGAGTTCATTCAACTTGGCGCTGCAGTGCTTG
ATGCTGCAAAAGGCTGCCTCAATACATTTGGGGTGCTTCCATGCCACATA
CCTCAGATGAATTAATTCAAGGTCTCAAGTCATTCCAACACACCATCTAC
GCTTGATTCCACAAACATTCACGCTTGGTCCGCTTTGCATTGCTGTCCAC
CATCTGGTCCTTCAGTGGCTTCTCACCGCGACTGCATCGCCCAGCAATAT
CAGCGTGCACTGTCTCACCTCTACCTCCCCCCCCCCCCTTCGACCATCCG
CAGCTACCTGTGGAACTTCCTGTGCATTCCCGAGAGCAATATCAGCGTGC
ACAATCTCACCTCTACACCCACACTCCCCCCCTTCGACCACTCGCAGCTA
CCTGTGGAACTTCCTGTGCGTCCCCCCGCCGCACACGGCGCGCGCGCATG
CCCACCTCGACTTCAACTGCGAGTACCTCTTCTCCGCGTACGACATCGCC
TTCGGCGGCGTGCCCTTCGCCGTCTGGTACGACTCCCCTGAGCACTGCGG
CCACTTCCTCGACCACCTGCTCGCCGCCAACGGCGTCAACGTCGCCAAGG
CGCGCGCTACGAGCAACGGCGGCGCGTAGTAGTCATCACCGCTCAGCCAT
GATAGCGCGCGGCGGTGGCAGCGGCGGCTCTTCTGGGCGCAGCCATCGTC
TCACCGCGCGCAAGCTGCGCCGCGCAGCTGCCGCATGGCATGGCCGGTTG
CGCCGTGTCAATGCTGCAGCGCTGAGATAGCAGCAGTGCTCGGACACTTT
GGCGGTAGCATTGGGACCAACAGCACCATGGGGTCACCTGAGCGTTGTAA
CATGGGCTGCGGCAGCTGTGGGCGCAAGCTTCGGCGCACCAGCGTGCAGC
GGGCGGGGCGCGGTCGCGGTCATTGTATTTTTGCAGATGTACAGGTCAGA
CCGCCGTAGCAATTTAGGGCTGCAAGGAATGGAAGTGTCCTTGGACTCGG
TTGTGTGTTTGCCACGCTTGTGTGTGCTATTGGTCTGCTGGTGTTCGCCT
CCTCAAGGCCTGCAGCGAAGTAAGGTGCTGACCTGATCACTGCCGTGTTG
TGAAGGCTTGCACAGGCATCGCGCCTGCGCCGGCAACCCACACGGCCGAG
CCCTTTTGGGCAGAGGTTAATGCAGGTATGGCACACAAGTACCTCCCCCC
CCCCTCCCCTTCACGTGATGCAATATCATTGTGTTGCATCTCTATGTAGG
TGCATGCATGCCTTGAGGCACGATTCACAACGTAAAGTGCCAGCGTTCCC
GCCTTGGTGAGAACTGCAAGTGCATGCAGTCTTCGTTCTCATCGGTTACT
GCAACCTGCAGGCATCTCAGGCAATCGAAGGTGCTGAGACGAACTGAGCT
GTGTTTTGCTGATGCGGCATGAGAGCGTTGGTGCCTGTGCGGACCGGTCA
AGTTGCACGTCGTCTGTCCCCCTGAAAGTCCTGCCGCACAGCGCCACTGA
TGGCACGCAGCGACAGGGCACACCCAAGTTCCTCTCAGCGAAAGCAAGTG
TGTATTTGCTCGTGCATGAAGGTGATCTGCAAAGCTCACGACATGCAGCT
CAGTGGACTCAATTGCCCTTCAAGCTGTGTACTGGAAGGAGGTGTAACAT
TTAATCATCCGTTAGGGCTTCAGTCTAAGCAAGAGCACGGCTCAGTGCTT
GCATCTCAGCAGTGCAAGGTACAGGCAGGTGTGATCGTGAAGATGCACGG
TGGCACTTTTGAGTTGTTTTTTCTTCACCCTCAACAGCGCCTGCATCTCA
CAGGCAACAAGTAGGCCATGCAGCACATACGTCGGGACCAAATACTCATC
TTCAAGATGAACACGAGAAAATGCGCCGCAGGCGATGCGTAGATGAGCCT
AGATCCAAAGTGAAGTTCACATCTTCAACTATCCGAAGTTCGCATCTTCA
ACTGTTCGGTTCCAGCGCTTGCCCTAGGAAACGCTTTGCATCAATAGCCA
TGACAATCGAAAGCAATGGTGCTGGCGAAGCACCGTCCCAGAAACACCTC
AAGACTGCAGCTGTTCATGAGGCGAGCATGGACAAAGTCACCCGAGTGCT
GTCAGTGATAGCTCAGACACGATTTGCCCAAGGTCGCGTGGGATCTCTGC
AGATCGATTCGGCAAACAGCGAGACCGGTGATGCACCTGCGGCCCGAAAG
ATATCAGCCAGTGGGTTCGGCGGCTCAGGCGTTTCTCACCAAAAACATTG
CGCACCTGACGCTCCATGGCCCTTTCGAGTCGGATCCGATGCTCGCCCTC
GCAGCCGGTCTAGGCGCAACGGATAATCTGAGCTCTTTCTTCAGGGATGT
CAAGGTCATGGACCTGTACTGGCCAGGTGCTGGGCTCCCGCACATTCCGC
GGTCGCTGCGGGAGCTGCACCTGCACCTGGGCTACGCTGACCTCGGCCCC
GATCTTGTGTGTGCGCTGCTGCGTGCAACAGATCATCTCACACACTCGCC
CTATCTTCCGAATGATGCGCAAACGCCAGCCAGCCTCCCTCCTGATCACG
TTGCCGCGTTGGCGGCGCACCTGCCGGAGCAGGTCTGCGGCCCGTTGACG
CTGACGTCACTCAGCTTTGATACTGGCGTTGCCCGCCTGCCAGACAGCAT
CGGCACGCTGCCCACGCTCACGGCGCTGACGCTGCACAACTGCAGTCGAG
TCACCGGCCTGCCGGACAGTGTTGGCGAGCTGGCTGCGCTCACTACGCTG
ACGCTGCGCAGCTGCGATCGGCTCTCAGGCCTGCCCGACAGCATCCGCGG
CCTGTCGCAGCTCACCACGCTGTCGCTGCAAGACTGTATCGGGCTCAGAC
TCCTGCCGGATTGCATTAGCGGCCTCACAACTCTGGCAACGCTGGACCTG
AGCGGCACTTCGCTTGTTAGTGTGCCCGAGACCATCGGCGGCTTGCCCGC
GCTGACGGCGCTCAACCTAGACGGCTGCCGCGCTCTCTCGTCGCTGCCTG
ACAGCCTCGGCAGCCTTAGCGCGCTGACAACGCTGGGCCTGAGCGGCACT
TCACTTGTTAGTGTGCCCAAGACCATCGGCGGGTTGCCCGCGCTTACAGC
GCTCAACCTGGACAGCTGCAGCGCGCTCGCCCGCCTGCCGGAAAGCCTGG
GCAGCCTCGCCACGCTGACGACTCTCATCTTGAGTAACTGCGGCGCGCTG
ACGCGCCTGCCGGAAAGCCTCGGCAGCCTTGCTGCTCTGGCAACGCTCAA
CTTGTGCAGATGCAGCGGGCTCCGGCATCTGCCACACAGCATCGGCGATC
TGGCGGCGCTGCTGACGCTCAACCTTAACGGCTGCGGCAGCCTTCAAGTC
CTGCCAGACGCCATCGGTCGGCTGGCGACGCTGACGGCGCTCCGCCTGAG
CTACTGCAGCTCGCTGGTACGCCTGCGGACAGCATCGGCGGTCTGCGCGC
GCTGATGGAGCTGCTCCTGCAGGACTGCTTTGCGCTCGCAGCCCTGCCGG
AGACCATGGGCGAGCTGGCAGCACTGACGACCCGCCACCTGAGCGGCTGC
CGAGCACTGACGCGGCTGCCGGAGTCCATCGGCGAGCTGGCGGCGCTCAC
GGCCCTCAACCTGTACGCATGCCGAGCGCTGCCGCAGCTGCCGCGGAGCA
TTGGCGCGCTGGCCAGCTTCAGCGGCTCGACATACGCAACTGCCGGTTGG
CGCTGCAGCAGAACTTGCCAGACGCTATCATGCGTGTGACGCAGCGTGAT
GGCTTTTAGGAGGTGCCTCAGCAGGTGAATAGAGGGGGCAGTCACTTGTG
ACGAGTAGAGCCTGAATCTCCCAAGTCACTTGTCTAATGGTGGTGTGGCA
ATATCAACTGCAAGCACCACTAAGAAGGCGTGCTCTTAGAGCCATAGTAG
GTCCCACCTCATTGCATGTGCTGAGGAGTCACAATGGTGGGTGCGGTGCA
GTGGCATTGACTTTGCCTGCCTGGCGCTTGCGAAGAATACGTGGACTTGG
GGGCTGCTGACCTGCAGTCAAGTAATTGGCGTCGACGCTAACGAAAATCA
GCTGCGAACATGCACAATTGCATGGGACACCCGGCCTCCCTTGGGGCCTT
TATGAATATTTTAATGCACATCATGAGAGCGCTGCATGCACATGCCAGTG
ATTGCACAGTGTTTGCTGCAAACTTCATGGGCCAGCGCACCTGGCTCTTG
CTGTGCACCAAAGGTTGCTGTTTTTTCCTTCTGACTGCAGCTTCAGAGGT
ATGGTTGTACAATGCATTCCCATAAAGGTGTACACCAGTTTGTTTGTTTT
GCAAAAAACTTTGGGGGAAAAATGCCCCGTGATAACTGCGCACCTACTTG
TACATTTACATCTACACCTGTCACCCGGCGTCGGCAATCACTGCATGCTG
AGCAAGGGCACTCCACAACATTGTCCCACAGCAAGCATGTGTCAACTCGA
GAGCGATAAATACGGCGTCTGTACATGGCGCCCCAAATGTGCCATTGACA
GCGACCCCCTAGGGAGCCCCGGAGAAACATACATGCGGGGGGCACACGAC
GATGGTCCCCCCTCACACACAAACGCAAAAGTCCGAAAACCGACAGCACT
CTACTACCTGACACCTGCAAGCAATCATAACTGCGACGCGCGCACCCTAC
CGATTGCGCGCGCTGGTGTTGTCGATGCAGCTAGTGTCGTACAGGTATTG
AGATGCAACAGTTGTGTCGTACAGGTACCGAGGTGCGTTGCATAGACAAC
TTGCACACCTGGGCGCACACAACGAAGGCGCCACGGCAAGCCTCAGATCG
TGCGGTGCGCTGGGGCTGCGTGCAAAAGGCACGTTGCAGCGCGCATGCTG
CGGCTGTGGCAGCAGCTGCTGCTGCGCTGTCACGGTGGTCGTGCTAGCGC
TATCAGTGCTGTCACTGCGGGCGCTGCCGCTGCCGCTGCTGCTGCCGCTG
CTGCTGGTGGCAGTGGTGCCGGTGCCGTCGTTGCCGCCGCCGCCGCCGCT
GCTGTTGCTGCCATTGGCTGCTGCAGTCGAAGAGCGCCGCTTCAGCAAAG
CGATCCATCGGTAATCGACCTAGACCCAGTTCTGAACGCCGTTGCAAGTG
GCAGTGCTCACGCGCTAAACGTTGATGGTGCGCACCACCTGCTGCACCAC
CGCTCTGCAGACGGGGCACTCATTGAACTGC

Coding sequence (CDS) from alignment at Contig_47:827231..834211-

>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Trimin1|349732|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2202bp|location=Sequence derived from alignment at Contig_47:827231..834211- (Tribonema minus UTEX_B_3156 )
ATGGCTCCTGTCTTCTGCCCTCCGGTGGGCCCAAACGGCTTCATCGACCC
TCTCTACTTCCCAGGCCGCATCTTCGCACCCTCCATTCCACCGCTGCCAC
CGCCACCGGGCGTGCCACCGCCGCCACCTCCAGGCGTGCAAGTGCCGCCG
CCGGGCATGCCGTTCGCGCCGCCGCCCGCCGTCCCCCCACCGCCGCCACT
GGGGCCGACGCTCTCTGCGGGGCGCCTGACGAACACCACCGCAGCTGGTG
ACAGCGGGGGGGCAGCGAAGGGGGATTTGGGGGGCCCGTTTGGGGTGCCC
CTCGGGCCAGGACCCCCCGTCGGCATCTTCTCGCCAGTGCTCAACATACC
GCCGCTGGAGCCTGCGTTCTGCTACCTGTGGAACTTCCTGTGCGTCCCCC
CGCCGCACACGGCGCGCGCGCATGCCCACCTCGACTTCAACTGCGAGTAC
CTCTTCTCCGCGTACGACATCGCCTTCGGCGGCGTGCCCTTCGCCGTCTG
GTACGACTCCCCTGAGCACTGCGGCCACTTCCTCGACCACCTGCTCGCCG
CCAACGGCGTCAACGTCGCCAAGGCGCGCGCTACGAGCAACGGCGGCGCC
GCTGAGATAGCAGCAGTGCTCGGACACTTTGGCGGTAGCATTGGGACCAA
CAGCACCATGGGGTCACCTGAGCGTTGTAACATGGGCTGCGGCAGCTGTG
GGCGCAAGCTTCGGCGCACCAGCGTGCAGCGGGCGGGGCGCGTGGGTTCG
GCGGCTCAGGCGTTTCTCACCAAAAACATTGCGCACCTGACGCTCCATGG
CCCTTTCGAGTCGGATCCGATGCTCGCCCTCGCAGCCGGTCTAGGCGCAA
CGGATAATCTGAGCTCTTTCTTCAGGGATGTCAAGGTCATGGACCTGTAC
TGGCCAGGTGCTGGGCTCCCGCACATTCCGCGGTCGCTGCGGGAGCTGCA
CCTGCACCTGGGCTACGCTGACCTCGGCCCCGATCTTGTCTGCGGCCCGT
TGACGCTGACGTCACTCAGCTTTGATACTGGCGTTGCCCGCCTGCCAGAC
AGCATCGGCACGCTGCCCACGCTCACGGCGCTGACGCTGCACAACTGCAG
TCGAGTCACCGGCCTGCCGGACAGTGTTGGCGAGCTGGCTGCGCTCACTA
CGCTGACGCTGCGCAGCTGCGATCGGCTCTCAGGCCTGCCCGACAGCATC
CGCGGCCTGTCGCAGCTCACCACGCTGTCGCTGCAAGACTGTATCGGGCT
CAGACTCCTGCCGGATTGCATTAGCGGCCTCACAACTCTGGCAACGCTGG
ACCTGAGCGGCACTTCGCTTGTTAGTGTGCCCGAGACCATCGGCGGCTTG
CCCGCGCTGACGGCGCTCAACCTAGACGGCTGCCGCGCTCTCTCGTCGCT
GCCTGACAGCCTCGGCAGCCTTAGCGCGCTGACAACGCTGGGCCTGAGCG
GCACTTCACTTGTTAGTGTGCCCAAGACCATCGGCGGGTTGCCCGCGCTT
ACAGCGCTCAACCTGGACAGCTGCAGCGCGCTCGCCCGCCTGCCGGAAAG
CCTGGGCAGCCTCGCCACGCTGACGACTCTCATCTTGAGTAACTGCGGCG
CGCTGACGCGCCTGCCGGAAAGCCTCGGCAGCCTTGCTGCTCTGGCAACG
CTCAACTTGTGCAGATGCAGCGGGCTCCGGCATCTGCCACACAGCATCGG
CGATCTGGCGGCGCTGCTGACGCTCAACCTTAACGGCTGCGGCAGCCTTC
AAGTCCTGCCAGACGCCATCGGTCGGCTGGCGACGCTGACGGCGCTCCGC
CTGAGCTACTGCAGCTCGCTGGACTGCTTTGCGCTCGCAGCCCTGCCGGA
GACCATGGGCGAGCTGGCAGCACTGACGACCCGCCACCTGAGCGGCTGCC
GAGCACTGACGCGGCTGCCGGAGTCCATCGGCGAGCTGGCGGCGCTCACG
GCCCTCAACCTGTACGCATGCCGAGCGCTGCCGCAGCTGCCGCGGAGCAT
TGGCGCGCTGGCCAGCTTCAGCGGCTCGACATACGCAACTGCCGTGCTGT
CACTGCGGGCGCTGCCGCTGCCGCTGCTGCTGCCGCTGCTGCTGGTGGCA
GTGGTGCCGGTGCCGTCGTTGCCGCCGCCGCCGCCGCTGCTGTTGCTGCC
ATTGGCTGCTGCAGTCGAAGAGCGCCGCTTCAGCAAAGCGATCCATCGGT
AA