mRNA_6283 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166894
Unique NamemRNA_6283
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A835YS97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS97_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 2.340e-142
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1 
Query:    1 MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQS 636
            MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQS
Sbjct:    1 MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQS 212
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A835YRP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRP1_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.300e-90
Identity = 144/226 (63.72%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:    7 YTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVE-KGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSL---------------AAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQS 636
            YTLHYFNF+GR EP+RLALAICGVPF DKRI+  ELMAGKASGFLPYG VP+LEVE +   K VIAE++ IMAYIVA HGAA GMARTDPLDIARVEEIRSA D M   +  +++EKDEA+K+A+RAELAA  +P+                 AAIDARL+P G+  G +LT+ADL LD  V WLA G LDGIP T+  PYAN+ RCR NVRAHP V+ WY S+Q+
Sbjct:    5 YTLHYFNFTGRAEPVRLALAICGVPFTDKRITRDELMAGKASGFLPYGTVPILEVEMEDGKKDVIAETAAIMAYIVAAHGAAAGMARTDPLDIARVEEIRSAADGMFARIAATMSEKDEAKKMAVRAELAATVIPRXXXXXXXXXXXXXXXXXAAIDARLRPDGHVCGDTLTSADLILDGIVAWLALGVLDGIPTTLVAPYANVERCRANVRAHPRVREWYASKQA 230
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A835YRD8_9STRA (Putative glutathione S-transferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRD8_9STRA)

HSP 1 Score: 263 bits (671), Expect = 2.860e-86
Identity = 138/208 (66.35%), Postives = 160/208 (76.92%), Query Frame = 1 
Query:    7 YTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVE-KGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKS 627
            YTLHYF+ +GR EPLRLA A+CGV F D+R +  E    KASGF PYG VPVLEVE +   K VIAE S IMAYIVA HGAAGGMARTDPLDIARVEEIRSATDAM++ + P++ EKDE +K+AMRAELA+  LP+ LAAIDARLQ SGY SG +LTAAD+ L+ AV WL+ G LDGIP TI D Y  + +C  NVR HP V AW+KS
Sbjct:    6 YTLHYFDMAGRAEPLRLAFAVCGVEFTDRRFARDEWPEVKASGFPPYGHVPVLEVETEDGKKEVIAEFSAIMAYIVAAHGAAGGMARTDPLDIARVEEIRSATDAMVSKISPTMWEKDEEKKVAMRAELASTTLPRYLAAIDARLQDSGYVSGDTLTAADINLEEAVAWLSKGILDGIPTTIVDAYPRVLKCAANVRDHPRVVAWHKS 213
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A836CC62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC62_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.110e-47
Identity = 100/201 (49.75%), Postives = 128/201 (63.68%), Query Frame = 1 
Query:   40 GEPLRLALA--ICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQS 636
            G P R      +C     D R SG+ L   +A+   P    P        + ++IAE+S I+ YIVA HGAA GM R DPL+ ARVEE RSA D++   L  ++ EKDEARK+A RAELAA  LPK LAAIDARLQ SGYASG ++T AD+ +  AV  + +G L+GIP  +A PYA IA+C  NVR HP V AW+KS+++
Sbjct:  108 GSPARAGRQPHVCTSLRYDTRKSGERLGFFEAAPS-PRTAPPARVKGDDGATTIIAETSAILGYIVAAHGAAAGMQRADPLEAARVEEFRSAIDSLGAKLSATMYEKDEARKMAARAELAATTLPKGLAAIDARLQDSGYASGDTVTVADIAVSEAVRRVESGVLEGIPTDLAAPYARIAKCAANVRGHPRVVAWHKSREA 307
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A2E7BV08_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7BV08_9DELT)

HSP 1 Score: 121 bits (303), Expect = 1.060e-30
Identity = 80/206 (38.83%), Postives = 109/206 (52.91%), Query Frame = 1 
Query:   13 LHYFNFS-GRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSG---YASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAW 618
            L YF+F   R EP R+AL I  +PF D R S +E +  K +G LPYG +PVL+V+       IA+S  I  Y     G   G+  +D L  AR +E+      +   LGPS+  KD   K  +R  LA    P+ L  ++ARL+ +G   +  G SLT ADL +   +GWL  G LDGIP  + DP+  +   +E V  HP V AW
Sbjct:    7 LIYFDFPFWRAEPSRIALFIGDIPFEDVRPSREEFLRMKRTGELPYGQLPVLDVDDVR----IAQSVAIARYC----GKVSGLYPSDALQAARCDELLDTATQITQDLGPSMRSKDPEEKARLRQNLAQKIFPRWLGMLEARLEANGDNGFFVGESLTMADLIIWRLLGWLRGGILDGIPTDLLDPFPGLLGHQETVGQHPGVVAW 204
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: K3W6R3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6R3_GLOUD)

HSP 1 Score: 123 bits (308), Expect = 1.100e-29
Identity = 82/210 (39.05%), Postives = 119/210 (56.67%), Query Frame = 1 
Query:   13 LHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMART-DPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARL----QPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKS 627
            L YF   GRGEP+RLAL I G+PF D+RI+ +EL   K S  LP+  +PVLEV+      VIA+S  I+ Y+    G   G+  T DP+   +++E+    D + N  GPS  EKD  ++LA+R  LA   +PK L  ++ R+        YA+GA+LT ADL + + +  LA+G + G+P T+          R+ V AHP V  WY++
Sbjct:  216 LTYFPRPGRGEPIRLALHIAGIPFEDERITPEELAVRKPS--LPFNQLPVLEVDG----DVIAQSLAILRYV----GTLSGLYPTNDPVLAFKIDELFCLIDDLHNVWGPSFREKDAEKQLALRKVLAEETIPKFLGHLNKRVGEAASEGSYATGATLTVADLAISALLNGLASGHMAGVPATVV---------RDQVHAHPKVVEWYQT 406
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 1.410e-29
Identity = 79/209 (37.80%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    1 MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQP---SGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAW 618
            M   L YF+F G  EP+RLA A+ G+ F D R   ++    K     PYG VP L +       V A+S+ I+ Y     G   G+  TDP++   V++I  A + M   + P++ E+DE +K+ MR  LA   LPK L   +  ++    SGY  G SLT ADL L + +G L +G LDGIPKTIA+P+  +    E V A   V+A+
Sbjct:    1 MQQKLSYFDFKGVAEPIRLAFAVGGIDFEDHRFQREDWPQLKPK--TPYGSVPTLTI----GDRVYAQSNAILRYA----GKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKVKAF 199
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A0G4GKH4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKH4_VITBC)

HSP 1 Score: 116 bits (290), Expect = 9.410e-29
Identity = 74/208 (35.58%), Postives = 113/208 (54.33%), Query Frame = 1 
Query:    1 MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSGYASGASLTAADLTLDSAVGWLAAGALDGIPKTIAD--PYANIARCRENVRAHPSVQAW 618
            M   + YF F GR EP+RLAL I G+ F D R++G+E    KA G LP+G  P++EV+       +A+S   + Y     G   G+  +D  + A+V E +   + ++ ++ P+L EKDEA+K+ M+ ELA    PK    ++      GYA G+ LT ADL+L + + WL  G + GIPK + D   +  + +    V  H  V+AW
Sbjct:    1 MGIKIIYFPFKGRAEPVRLALTIAGIDFEDTRVTGEEFAKMKADGVLPFGQFPIIEVDG----KPLAQSVAQLIYA----GRLAGLIPSDTWEEAKVMEFQMGIEDIVTAMIPALMEKDEAKKMEMKKELADVTFPKWFGYMEKLAGDGGYAVGSKLTIADLSLYNLMSWLKDGIV-GIPKDMFDHGKHTKLNKVFATVDGHEKVKAW 199
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A7S1XZ57_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZ57_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.120e-27
Identity = 70/190 (36.84%), Postives = 109/190 (57.37%), Query Frame = 1 
Query:    1 MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEIRSATDAMLNSLGPSLAEK--------DEARKLAMRAELAANALPKSLAAIDARLQP--SGYASGASLTAADLTLDSAVGWLAAGALDGIP 540
            +SYTL YF+F GRGEP+RLA AI G+PF ++ ++G E  A K++G LPYG VPVL++  G + + +A+   ++ Y+    G   G+  TDP++  +V+E     D     +  ++A          ++  K AMR  LAA  LPK LA ++  ++   SG+  G S+T ADL     +G + +G +D IP
Sbjct:   43 LSYTLTYFDFPGRGEPVRLAFAIGGIPFENRTVTGAEFAAMKSAGELPYGSVPVLDIHDGENTTRVAQHVALLRYV----GRLAGLYPTDPIEALKVDEATYFADEFGQCIFAAMAPMRYGFAPYANDEEKAAMRQRLAAEVLPKLLAKLNTIIEGNGSGFVVGPSITIADLKWYFHIGMVLSGFVDDIP 228
[Close]
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Match: A0A067CCA8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CCA8_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 1.350e-27
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:   13 LHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYGVVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMART-DPLDIARVEEIRSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSG----YASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAHPSVQAWYKSQQ 633
            L YF+  GR E  RLAL +  +PF D+R+S  E MA K +  LP+  +P L V+      V A+S G+  YI    G   G+  T +PL   RV+EI +A+D ++N+L PSL E+D  +KLAMR EL A  LP   A ++ARL  +     +  G +L+ AD+ L      + +G +DGIP TI D Y       + V A P V AWY S+Q
Sbjct:    8 LTYFDSPGRAELTRLALFLHDIPFEDERVSYAEFMARKPT--LPFQQLPTLTVDG----EVFAQSHGMARYI----GHLTGLYPTSNPLGAYRVDEILAASDDIVNTLIPSLFERDMDKKLAMRKELVAATLPTLYACVEARLVAANSQGPFLLGETLSLADIELFVMRMSMRSGHMDGIPTTICDNYPRWNAIADAVAALPKVHAWYASRQ 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS97_9STRA2.340e-142100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRP1_9STRA1.300e-9063.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRD8_9STRA2.860e-8666.35Putative glutathione S-transferase n=2 Tax=Tribone... [more]
A0A836CC62_9STRA1.110e-4749.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2E7BV08_9DELT1.060e-3038.83Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
K3W6R3_GLOUD1.100e-2939.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A061SAH2_9CHLO1.410e-2937.80Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
A0A0G4GKH4_VITBC9.410e-2935.58Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1XZ57_9STRA1.120e-2736.84Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A067CCA8_SAPPC1.350e-2740.09Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_47contigContig_47:764392..768820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166894|e_gw1.47.36.1
DescriptionGlutathione S-transferase. Source PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota,1MFV7@121069|Pythiales
Evalue3.86e-31
Seed ortholog36331.EPrPI00000020200
Hectar predicted targeting categoryother localisation
TranscriptId167216
TrackFilteredModels1
ProteinId166894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166894gene_6283Tribonema minus UTEX_B_3156 geneContig_47 764392..768820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6283_1exon_6283_1Tribonema minus UTEX_B_3156 exonContig_47 764392..764436 +
exon_6283_2exon_6283_2Tribonema minus UTEX_B_3156 exonContig_47 766005..766127 +
exon_6283_3exon_6283_3Tribonema minus UTEX_B_3156 exonContig_47 767903..768144 +
exon_6283_4exon_6283_4Tribonema minus UTEX_B_3156 exonContig_47 768592..768820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6283CDS_6283Tribonema minus UTEX_B_3156 CDSContig_47 764392..764436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166894Trimin1|166894|e_gw1.47.36.1Tribonema minus UTEX_B_3156 polypeptideContig_47 764392..768820 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Trimin1|166894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_47:764392..768820+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTACACTCTCCACTACTTCAACTTCTCTGGCCGTGGTGAGCCCCT
GAGGCTGGCGCTCGCCATCTGCGGCGTGCCCTTTGTCGACAAGAGGATCT
CGGGCAAAGAGCTCATGGCCGGCAAGGCCAGCGGGTTTCTCCCTTATGGA
GTGGTGCCTGTCCTGGAGGTCGAGAAGGGCAGCAGCAAATCCGTCATCGC
CGAGTCGTCCGGCATCATGGCGTACATCGTTGCCACGCACGGCGCCGCGG
GCGGCATGGCGCGCACCGACCCGCTGGACATTGCGCGCGTCGAGGAGATT
CGCAGCGCCACCGACGCGATGCTTAACAGCCTCGGCCCGTCGCTGGCGGA
GAAGGACGAGGCGCGGAAGCTCGCCATGCGCGCGGAGCTCGCGGCCAACG
CGCTCCCCAAGTCGCTGGCGGCCATCGACGCGCGCCTGCAGCCCAGCGGC
TACGCGAGCGGCGCCTCCCTCACGGCCGCAGACCTCACGCTCGACTCGGC
CGTCGGCTGGCTCGCCGCAGGCGCCCTCGACGGCATCCCCAAGACAATCG
CCGATCCGTACGCGAACATTGCGCGCTGCCGCGAGAACGTGCGGGCCCAC
CCGAGCGTCCAGGCGTGGTACAAGAGCCAGCAGTCCTAG
back to top

protein sequence of jgi.p|Trimin1|166894

>Trimin1|166894|e_gw1.47.36.1 ID=Trimin1|166894|e_gw1.47.36.1|Name=jgi.p|Trimin1|166894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MSYTLHYFNFSGRGEPLRLALAICGVPFVDKRISGKELMAGKASGFLPYG
VVPVLEVEKGSSKSVIAESSGIMAYIVATHGAAGGMARTDPLDIARVEEI
RSATDAMLNSLGPSLAEKDEARKLAMRAELAANALPKSLAAIDARLQPSG
YASGASLTAADLTLDSAVGWLAAGALDGIPKTIADPYANIARCRENVRAH
PSVQAWYKSQQS*
back to top

mRNA from alignment at Contig_47:764392..768820+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Trimin1|166894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4429bp|location=Sequence derived from alignment at Contig_47:764392..768820+ (Tribonema minus UTEX_B_3156 )
ATGTCGTACACTCTCCACTACTTCAACTTCTCTGGCCGTGGTGAGGTGAG
TTGAGGCTTGAAGTACACGTCACAGTCGATAAAGGCGTGTGTGCCTTCAA
AATTGACGGCAGGACAAGGGTGTATGTGAAAATCAATGTAAACTTTACGC
TATTCGGTTTGCCACACGAAAATCTACTGCGGATTGGCTTGGTGCACAAA
GCAGGATCAGAGTTGCTTGGTGAATCAACATGAGGTTTTTTAATGAGGCA
TTCTGCAAGCCGCGTACATTTGCATATCATACGTCGTCGTTTTGCAGCCT
CCCATGTACCGTGCTTTCCAACATTTGGGTCCCCTTGGCAATGCTGTATG
CTGGGTCCCCTTGGCAATGCTGTATGCTGCTGTGCCTTTTCACAACTCAG
TTTTCTAGGTGCCAATCATCATAATGGTACACTGCCACCGACCCATAATT
TCACCCTCAATGCATCATCAGCTGAATCAAGAAGATGAAGCTACCGTTGG
CCATACTTCGTGGTAGATCGCCGAACAAAAACTGCCATTGCAAAGAGGCA
CCGATTTTCCCTACAGAGGCTGCATTGAGATGCACGTTGGCAGAGTGTAA
CTGATGTGTCTGGGCCGCTAGGGCAAGTCATTGCAGTGACATTTGCTATA
GCCCTCGAGCAATTCAGGCCTGGGGAATACTGCAGCTGATCTCAATGTAA
GCCGATCCAGCTAGCAAACAGTTGTCTAGGAACGATACATAGCATGTGCT
CTACAAGCCCCGACTCACCACTGCTAGCACGTTGGCTCCTGAACTGACCA
TTGGGATGTCCAACTGCTAATGGCAGTAACAACAGCTACATTGCCGCCCT
CAACTGACCATTGGCAGGACTAGCGGCTCATGGCAGTGACAAGGGGCTAC
ATTGCAGCCGTCAACATCAACTTGAAGGCTGAACGCTGCAATCACCGCTG
CACCGCAAGCCTTGACGAAGTTGCTCAGCATGCAATTATGGTGCGCTGTC
AGCACTGTGCTGCGCAAGCACTTGGCACAGCCGGCTGCGTGAGGCGCAAC
CTGTTTCGGACGTTTTCAACCGTGGCAGTCGACACGCTTGCAGACGCATG
TTACTGGCGTCCCCTGATGCGCCTGCCCTGCAGTCCTGCACCAGCGTCCA
AGAAGAAGCACTTGAAGTACACAGAATAGTCTCATGCGTGCTCGAGCGCC
TGGCATTCGGTCATTTTACCAAACTTTCCATGTTCAAACCTCCAGCAGAT
GCAGTCGTCACCTGGGCTTTTGGGCCTTCAGTGAGACTCAGTTGTAGAGT
ATACAGCAGAGCGCAGGCTGAAGCAGTTGACTGCTTCCGCGTGCGCTGTC
AAAGACATGCCACGCGGTACTGTGAGGTGCGTCATAACACTGAGTGAGCA
CCGGCCAGCGTCGATGGAAGACATCTGGAGGCATGTAAACATTATGCTGA
ATTTATGAAGGGTGACCCTACGCCAAACCCCTGGTGAACGCGCAATCGCC
GCTAGCAAGTGGCTTAGAAGTGGCCAAAGCTTTACACATGTCATAGTTCA
TGCCCTGATGGCGCACAGCTCATATGCCGTTCATCACCTTGTCACCCTGG
TGCGTTTCGGCAGCCCCTGAGGCTGGCGCTCGCCATCTGCGGCGTGCCCT
TTGTCGACAAGAGGATCTCGGGCAAAGAGCTCATGGCCGGCAAGGCCAGC
GGGTTTCTCCCTTATGGAGTGGTGCCTGTCCTGGAGGTGAGCACCTCATG
CATGAAGCATTGATTCACAAGTATATAAGTGTAGAATTTTGTCTTGTGCG
AATTTGTGATCTTGCCATTTATTTGTGGGAGCGATGCACATGGATAATCA
TTGATCAAGGATGGTAGGGCACGGCCCATTTTCCGAATCATCAGCCTATG
CCTATCGAGGATGCATCATTGGTTCTTCTAGCTGTGATGTCAAGGGGTTC
TCTTGAGATGCAGTCCAGGTTGAACTATGAACATAAGTTGTGCTATGGCT
CTGGGCACTACCCCTGGCCTACCTTGCGAAAAAGGCGTACATCAAAATGC
TTATTTGGTTTTCTGGAGCATAGGGTAAGGATCCGCAGTGGGGGAGGCCA
GCTGGTTTTTTTCTGCCCGGAGCGGGCAATGATTTGGGAGGCAGCCTCAC
CACATTTCGATATGTGGTGGGCTCATGTTCTGGCCATGGCTTCGAATGCG
TCGCTGCAGAAGCTGGCTGCAGGTTTGTGGGACCCTCAGCTACGTATACT
GCAATAAAGAAGGCAGGCTTAAACTGCACCTGAATCTTCAGTCTCCGTGA
AAATGGAGCATGATGCTGGTGGCAAATTCAGCAGTTGGGACCTCTAATGT
CATGCCCGGCTCGAGGCCAGACTAGGTGCCGTTGACTTCTTCCGGCTTAC
CTGCTGCATGTGGCAGCCTCGTGACTGGTGGTAGGTAGGTTGGTATAAGT
GCTGCATATCGCGCCACATCGATCAGCACATTGGTTTGGGAATGCACTCT
ATCATTCAACACTGCTACACTGGCAGTACCGCTTTGTCAGTGAACTGTTG
ATGTTTTTTTGCCGTTCCCCATCGCAGCGCCAACTAATCCTTAGGACAGT
GCCAGTAAAGTGTGCTTTTTCGCAATTGCTGTTCTTTATCGCATAGCCAA
GACCGTAGCACCCACCTCTTGATGCAGCGCCCTAGATATTATAATATCCA
CTCCCAATTTTTTTGCTGGCTTACAAACAAGACGGGGGAAAATGCATCAA
TAGGCCCTGCAATACCAGCATGCAGCTTCTTTGCTGTACAATGATCAAGT
TTCTGCCACAAGCAACACCCCCCCCCCCCCCCCCCGCTGCAGCCGCCACC
GCTCCGTTGAGTACCAGACAGCAAAACTGGGGCACGAGCGCCTGCACACG
GACTGGTGTCTGGCGTTCTGAAAGGCGTCAGTCACGTCTCTGCTCCTGGC
ATGCTAAATATAATCCCATTTTGCACTGTACGGTTCGTAAACAGAAAGGG
TGGCAGGAAGCGCGCACCGTTGCCAAAATGCATGCCGCCGCTGCATTGCA
TCACGTTACACAATGCGTTGGTCACCTCTCCTCTTCTGGCAGTGTATTCT
GGTTTCGTGTTGTACTGCACGAATTGGAGAATAGGAGAGTGAGCAGCAAG
GGCAACCATTGCCTAAGTGCATGCCGTCACCCCGTTGCATCATTGCTGCA
ACACATGAGGGCATCGCTCGCTAACTGAACATTTCAGCCCGCCCGTTTTG
CTTCTTGACCGCTCTCTGTGCCTCAGAGTGGATCGTAACAGTTAGAGACA
GAGTTTCAGTTGGGGTGGGGGTTAGGTTTGACATTAGACGAGGGCGCAGG
CTTCACTTGAAACTTGCTACAGTCCTATACGTGCACACACCACCAAGACA
TTCTCAAGAGCATCCATTGGGCAAGGGCAACGCGTCAATGCAGCTGCTGC
ATTCAGCCGATCCTGCAAAACCGGACCTTCAGCACATAGAGTCTCCTTCA
CTGAGCCTCAGGTCGAGAAGGGCAGCAGCAAATCCGTCATCGCCGAGTCG
TCCGGCATCATGGCGTACATCGTTGCCACGCACGGCGCCGCGGGCGGCAT
GGCGCGCACCGACCCGCTGGACATTGCGCGCGTCGAGGAGATTCGCAGCG
CCACCGACGCGATGCTTAACAGCCTCGGCCCGTCGCTGGCGGAGAAGGAC
GAGGCGCGGAAGCTCGCCATGCGCGCGGAGCTCGCGGCCAACGCGCTCCC
CAAGTGAGTGTACAGGGCCGTGCGACGACTCGCAGGACTGGCAAATGTGC
GTCTACCTCCCGCGCGACTGCCAGTGTGCAGGCAAGCATTGCGAAGTATG
CCATCTGTGGTGCGCGTGCTCGCCTCGGTGGTTTGCATCAAATTCCTCTT
GCGACACCAATGCAGGTATGGTCAAGGACGTATAGGCACTCTGCCCTCTT
GTCTCGCTTGCAGCTCCGGCGCTTTGCGCCCGTTTCACCCCCTGCGTTCC
CGCAACCCCCTGCGGGCAGGTCGCTGGCGGCCATCGACGCGCCTGCGCGA
CTACCGCCAACGTCGATACTGTAATCACGCTGTGTCGTGGCTCAGCAAGG
ACGCATACGCGCACACGCCTCTGCCCCCTTGTCTCATGTGCAGCTCCCGC
AGTTTCACGCCCAACTCACCCCCTGCTTCACCGTACCCCCCTGCGGGCAG
GTCGCTGGCGGCCATCGACGCGCGCCTGCAGCCCAGCGGCTACGCGAGCG
GCGCCTCCCTCACGGCCGCAGACCTCACGCTCGACTCGGCCGTCGGCTGG
CTCGCCGCAGGCGCCCTCGACGGCATCCCCAAGACAATCGCCGATCCGTA
CGCGAACATTGCGCGCTGCCGCGAGAACGTGCGGGCCCACCCGAGCGTCC
AGGCGTGGTACAAGAGCCAGCAGTCCTAG
back to top

Coding sequence (CDS) from alignment at Contig_47:764392..768820+

>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Trimin1|166894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_47:764392..768820+ (Tribonema minus UTEX_B_3156 )
ATGTCGTACACTCTCCACTACTTCAACTTCTCTGGCCGTGGTGAGCCCCT
GAGGCTGGCGCTCGCCATCTGCGGCGTGCCCTTTGTCGACAAGAGGATCT
CGGGCAAAGAGCTCATGGCCGGCAAGGCCAGCGGGTTTCTCCCTTATGGA
GTGGTGCCTGTCCTGGAGGTCGAGAAGGGCAGCAGCAAATCCGTCATCGC
CGAGTCGTCCGGCATCATGGCGTACATCGTTGCCACGCACGGCGCCGCGG
GCGGCATGGCGCGCACCGACCCGCTGGACATTGCGCGCGTCGAGGAGATT
CGCAGCGCCACCGACGCGATGCTTAACAGCCTCGGCCCGTCGCTGGCGGA
GAAGGACGAGGCGCGGAAGCTCGCCATGCGCGCGGAGCTCGCGGCCAACG
CGCTCCCCAAGTCGCTGGCGGCCATCGACGCGCGCCTGCAGCCCAGCGGC
TACGCGAGCGGCGCCTCCCTCACGGCCGCAGACCTCACGCTCGACTCGGC
CGTCGGCTGGCTCGCCGCAGGCGCCCTCGACGGCATCCCCAAGACAATCG
CCGATCCGTACGCGAACATTGCGCGCTGCCGCGAGAACGTGCGGGCCCAC
CCGAGCGTCCAGGCGTGGTACAAGAGCCAGCAGTCCTAG
back to top