mRNA_624 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156912
Unique NamemRNA_624
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A835Z302_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z302_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.630e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 
Query:    1 MAVVLRGRGAAVWVYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRFAPRGCMWRAPYPQRNGAARAQRRRERRAAWQLMQSCAHSAASRTVDVLGTRLLL 339
            MAVVLRGRGAAVWVYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRFAPRGCMWRAPYPQRNGAARAQRRRERRAAWQLMQSCAHSAASRTVDVLGTRLLL
Sbjct:    1 MAVVLRGRGAAVWVYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRFAPRGCMWRAPYPQRNGAARAQRRRERRAAWQLMQSCAHSAASRTVDVLGTRLLL 113
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A1U7YIT9_NICSY (probable protein phosphatase 2C 57 n=2 Tax=Solanaceae TaxID=4070 RepID=A0A1U7YIT9_NICSY)

HSP 1 Score: 68.6 bits (166), Expect = 6.330e-12
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +N GDCRAV+CR G A +++RDHKP CL E+ER+EA+GGY+
Sbjct:    9 ANAGDCRAVLCRRGKAIEMSRDHKPVCLREKERIEASGGYV 49
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: B9H9R0_POPTR (Protein-serine/threonine phosphatase n=9 Tax=Saliceae TaxID=238069 RepID=B9H9R0_POPTR)

HSP 1 Score: 70.5 bits (171), Expect = 6.900e-12
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +N GDCRAV+CRGG A D++ DHKPTC  ER+R+EA+GGY+
Sbjct:  198 ANAGDCRAVLCRGGNAIDMSNDHKPTCSKERKRIEASGGYV 238
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A022Q423_ERYGU (Protein-serine/threonine phosphatase n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q423_ERYGU)

HSP 1 Score: 70.5 bits (171), Expect = 7.000e-12
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +N GDCRAV+CRGG A +++RDHKP CL ER R+EA+GGY+
Sbjct:  206 ANAGDCRAVLCRGGKAIEMSRDHKPLCLRERRRIEASGGYV 246
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.540e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   40 VYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +YA NVGDCRAV+CR GVA DLT DH+P+  DER RV+ AGGYI
Sbjct: 1054 IYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGGYI 1097
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A6A3D743_HIBSY (PPM-type phosphatase domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D743_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 1.260e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRFAPRGCMWR 201
            +NVGD RAVICRGG AY ++RDHKP   DER+R+E AGG++ +A    +WR
Sbjct:   65 ANVGDSRAVICRGGKAYVVSRDHKPDQTDERQRIEDAGGFVMWAG---IWR 112
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: D8UKI3_VOLCA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKI3_VOLCA)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-11
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   40 VYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +Y +N GDCRAV+CRGG A  L+RDHKP   +ER R+EAAGG +
Sbjct:   14 LYTANTGDCRAVLCRGGRAVRLSRDHKPELPEERTRIEAAGGRV 57
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BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A2G9HLK5_9LAMI (Protein-serine/threonine phosphatase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HLK5_9LAMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-11
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +N GDCRAV+C+ G A++++RDHKP+CL ER+R+EA+GGYI
Sbjct:  206 ANAGDCRAVLCQRGKAFEMSRDHKPSCLKERKRIEASGGYI 246
[Close]
BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A1S4A0F0_TOBAC (Protein-serine/threonine phosphatase n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4A0F0_TOBAC)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-11
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYI 171
            +N GDCRAV+CR G A +++RDHKP CL E+ER+EA+GGY+
Sbjct:   90 ANAGDCRAVLCRRGKAIEMSRDHKPVCLREKERIEASGGYV 130
[Close]
BLAST of jgi.p|Trimin1|156912 vs. uniprot
Match: A0A392PAZ0_9FABA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PAZ0_9FABA)

HSP 1 Score: 66.2 bits (160), Expect = 2.330e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   49 SNVGDCRAVICRGGVAYDLTRDHKPTCLDERERVEAAGGYIRFAPRGCMWR 201
            SN GDCRAVI RGGVA  LT DHKP+ +DE+ER+E  GGY+    RG +WR
Sbjct:   55 SNAGDCRAVISRGGVAEALTSDHKPSRIDEKERIETQGGYVDMC-RG-VWR 103
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156912 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z302_9STRA5.630e-77100.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A1U7YIT9_NICSY6.330e-1263.41probable protein phosphatase 2C 57 n=2 Tax=Solanac... [more]
B9H9R0_POPTR6.900e-1265.85Protein-serine/threonine phosphatase n=9 Tax=Salic... [more]
A0A022Q423_ERYGU7.000e-1265.85Protein-serine/threonine phosphatase n=2 Tax=Eryth... [more]
A0A6H5L844_9PHAE8.540e-1270.45PPM-type phosphatase domain-containing protein n=1... [more]
A0A6A3D743_HIBSY1.260e-1158.82PPM-type phosphatase domain-containing protein n=1... [more]
D8UKI3_VOLCA1.750e-1161.36PPM-type phosphatase domain-containing protein (Fr... [more]
A0A2G9HLK5_9LAMI1.800e-1163.41Protein-serine/threonine phosphatase n=1 Tax=Handr... [more]
A0A1S4A0F0_TOBAC1.860e-1163.41Protein-serine/threonine phosphatase n=1 Tax=Nicot... [more]
A0A392PAZ0_9FABA2.330e-1162.75PPM-type phosphatase domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:823042..823383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156912|e_gw1.2.136.1
BRITEko00000,ko01000,ko01009,ko03009
KEGG koko:K14803
EC3.1.3.16
GOsGO:0002682,GO:0002697,GO:0002831,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0031347,GO:0032101,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050688,GO:0050789,GO:0065007,GO:0080134
Descriptionprotein phosphatase 2C 22
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota,37I5Q@33090|Viridiplantae,3GDKT@35493|Streptophyta,4JSF0@91835|fabids
Evalue1.13e-12
Seed ortholog3694.POPTR_0006s26450.1
Hectar predicted targeting categorymitochondrion
TranscriptId157234
TrackFilteredModels1
ProteinId156912
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156912gene_624Tribonema minus UTEX_B_3156 geneContig_2 823042..823383 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_624_1exon_624_1Tribonema minus UTEX_B_3156 exonContig_2 823042..823383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_624CDS_624Tribonema minus UTEX_B_3156 CDSContig_2 823042..823383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156912Trimin1|156912|e_gw1.2.136.1Tribonema minus UTEX_B_3156 polypeptideContig_2 823042..823383 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_624 ID=mRNA_624|Name=jgi.p|Trimin1|156912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:823042..823383- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTTGTGCTGCGCGGGCGCGGCGCGGCCGTGTGGGTGTATGCGTC
CAACGTGGGCGACTGCCGCGCCGTCATCTGCCGCGGCGGGGTCGCGTACG
ACCTCACGCGCGACCACAAGCCGACGTGCCTGGACGAGCGCGAGAGGGTG
GAGGCGGCGGGGGGCTACATCAGGTTCGCGCCGCGTGGCTGCATGTGGCG
CGCGCCGTATCCGCAGCGCAACGGCGCCGCCAGAGCGCAGCGTCGGAGAG
AGAGGCGCGCTGCGTGGCAGCTCATGCAGAGCTGCGCGCATTCCGCAGCG
TCGCGTACTGTAGATGTTTTGGGTACAAGGCTGCTTCTCTAG
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protein sequence of jgi.p|Trimin1|156912

>Trimin1|156912|e_gw1.2.136.1 ID=Trimin1|156912|e_gw1.2.136.1|Name=jgi.p|Trimin1|156912|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
MAVVLRGRGAAVWVYASNVGDCRAVICRGGVAYDLTRDHKPTCLDERERV
EAAGGYIRFAPRGCMWRAPYPQRNGAARAQRRRERRAAWQLMQSCAHSAA
SRTVDVLGTRLLL*
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mRNA from alignment at Contig_2:823042..823383-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_624 ID=mRNA_624|Name=jgi.p|Trimin1|156912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_2:823042..823383- (Tribonema minus UTEX_B_3156 )
ATGGCGGTTGTGCTGCGCGGGCGCGGCGCGGCCGTGTGGGTGTATGCGTC
CAACGTGGGCGACTGCCGCGCCGTCATCTGCCGCGGCGGGGTCGCGTACG
ACCTCACGCGCGACCACAAGCCGACGTGCCTGGACGAGCGCGAGAGGGTG
GAGGCGGCGGGGGGCTACATCAGGTTCGCGCCGCGTGGCTGCATGTGGCG
CGCGCCGTATCCGCAGCGCAACGGCGCCGCCAGAGCGCAGCGTCGGAGAG
AGAGGCGCGCTGCGTGGCAGCTCATGCAGAGCTGCGCGCATTCCGCAGCG
TCGCGTACTGTAGATGTTTTGGGTACAAGGCTGCTTCTCTAG
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Coding sequence (CDS) from alignment at Contig_2:823042..823383-

>mRNA_624 ID=mRNA_624|Name=jgi.p|Trimin1|156912|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_2:823042..823383- (Tribonema minus UTEX_B_3156 )
ATGGCGGTTGTGCTGCGCGGGCGCGGCGCGGCCGTGTGGGTGTATGCGTC
CAACGTGGGCGACTGCCGCGCCGTCATCTGCCGCGGCGGGGTCGCGTACG
ACCTCACGCGCGACCACAAGCCGACGTGCCTGGACGAGCGCGAGAGGGTG
GAGGCGGCGGGGGGCTACATCAGGTTCGCGCCGCGTGGCTGCATGTGGCG
CGCGCCGTATCCGCAGCGCAACGGCGCCGCCAGAGCGCAGCGTCGGAGAG
AGAGGCGCGCTGCGTGGCAGCTCATGCAGAGCTGCGCGCATTCCGCAGCG
TCGCGTACTGTAGATGTTTTGGGTACAAGGCTGCTTCTCTAG
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