mRNA_6107 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131628
Unique NamemRNA_6107
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A835YRX1_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX1_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.930e-92
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAFG 420
            QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAFG
Sbjct:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAFG 140          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A835Z9L3_9STRA (MAP kinase phosphatase with leucine-rich repeats protein 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.640e-33
Identity = 72/139 (51.80%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAF 417
            QD+A A V+   VY GSI AAFN +GL  +GITH++NASG          Y N  +RDRE A +L  +  T   I A +  +G VLV+C  GRSRSAAI  G+LMAKH  ++D A+E LR  RP V IN GFE+QLRAF
Sbjct:   15 QDNAPARVV-ANVYIGSIHAAFNQDGLAQRGITHVLNASGLPATFPRAFTYFNVDIRDREDAAILGALGATAVFIDAGVE-KGGVLVHCAGGRSRSAAIIAGYLMAKHAYTFDRALEALRVVRPVVAINKGFEQQLRAF 151          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A836CLF0_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.660e-31
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    7 DALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAF 417
            D L A +  +VY GSI AAFN +GL A+GITH++NASG          Y N  LRD+E AD+L  +   +  I A    +G VLV+C  GRSRSAA    +LM K   ++D AVEQL+A RP V IN GFE QLRA+
Sbjct:    2 DNLPAKVVDRVYIGSIHAAFNQDGLLARGITHVLNASGLPATFPRSFTYFNVDLRDKEEADILGALGAASVFIEAGTE-KGGVLVHCAGGRSRSAAFIAAYLMMKQDFTFDQAVEQLKAARPVVAINRGFELQLRAY 137          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A6G0WNR0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNR0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.190e-21
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLR 411
            QD+    V+P K++ GSI AAFNLE L  + I+H++N S           Y    +RD++  ++L+ +  T+  I A +  +G +LV+C  GRSRS AI + +LM   G SY+DA+ ++R  RP V +N GFE QLR
Sbjct:   25 QDNVPCEVIP-KLWIGSIHAAFNLEALHERKISHVLNVSSTVATYPQAFTYLTVDIRDKDYTNLLSCIPITSVFIEAGIN-QGGILVHCAGGRSRSPAIVMAYLMLTMGLSYEDALTKVRTARPVVALNSGFEDQLR 159          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A8K1CNA5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNA5_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 3.480e-20
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLR 411
            QD+    V P +V+ GSI AAFN+E LQ K ITHIIN +G          Y + ++RD++ +++L+ +      + A + +   VL++C  GRSRS AIA+ +LM K   +++ A   +R  RP V +N GFE QLR
Sbjct:   15 QDNVPVEVAP-RVFVGSIHAAFNIEALQEKHITHIINLAGNYATFPESFTYLSISIRDKDYSNLLSCLPMALMFVDAGISSGTGVLIHCAGGRSRSPAIAMAYLMIKDQVTFEKAYTHMRTIRPVVSLNTGFEAQLR 150          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A5D6XN45_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN45_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.800e-20
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLR 411
            QD+    V PG ++ GSI AAFN++ L+ K I+H++N +  A        Y +  +RD++ A++L+ +      + A + A G VLV+C  GRSRS A+A+ +LM +   S+D A + ++A RP V +N GFE QLR
Sbjct:   15 QDNVPVEVAPG-LFIGSIHAAFNVDALREKRISHVLNLAAAAATFPDDFTYLSVGIRDKDAANLLSCLPVAMLFVQAGIDAGG-VLVHCAGGRSRSPAVAIAYLMTRDQLSFDAAADHVKALRPVVALNAGFESQLR 149          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A2D4CD61_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD61_PYTIN)

HSP 1 Score: 94.0 bits (232), Expect = 1.250e-19
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLR--AEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRA 414
            QD+    V P +V+ GS+ AAF+LE L+ + ITH++N +G          Y +  LRD++ A++L+ +      + A LR    G VL++C  GRSRS A+AV +LM     S+D A  ++R+ RP V +N GFE QLR+
Sbjct:  210 QDNLPVEVAP-RVFVGSVHAAFHLEALKERHITHVLNLAGHYATFPDAFTYLSLHLRDKDDANLLSCLPAALIFVEAALRDPRSGGVLIHCAGGRSRSPAVAVAYLMIHDLVSFDTAHARMRSLRPVVSLNAGFEAQLRS 348          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A6A3Y978_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y978_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-19
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLR 411
            QD+    +  G ++ GSI AAFN+EGL+A  I+H++N +G          Y + ++RD+E A +L+ +      I A L+  G VLV+C  GRSRS A+A+ FLM K   +Y      ++A RP V +N+GF+ QL+
Sbjct:   17 QDNVPVEIAAG-LFVGSIHAAFNVEGLKANKISHVLNLAGSYATFPEDFTYLSLSIRDKEYASLLSCLPIAAVFIDAGLK-HGGVLVHCAGGRSRSPAVAMAFLMMKQQMTYSVVSAHMKALRPVVSLNVGFDAQLK 151          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: W7TWT2_9STRA (Dual specificity protein phosphatase 9 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWT2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-19
Identity = 54/139 (38.85%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAF 417
            QDD    V+ G +Y GS+ +AFN + L    ITHI+NA+           Y N +L D E A++LA +      I   L     VLV+C  GRSRSA++ + +LM+K   +++DA  ++RA RP +++N GFE QL+A+
Sbjct:   18 QDDLPCKVIHG-IYIGSVHSAFNSDALGKCEITHILNATSVPSVFPELFTYFNLSLHDNESANLLACLPAAFTFIETALEEGTGVLVHCSGGRSRSASLVIAYLMSKLKLTFEDAFARVRAARPVIQLNQGFEMQLQAY 155          
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Match: A0A6G0SPF9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SPF9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.050e-19
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQYCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIAVGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLR 411
            QD+    +  G ++ GSI AAFN+EGL+A  I+H++N +G          Y + ++RD+E A +L+ +      I A L+  G VLV+C  GRSRS A+A+ FLM K   +Y      ++A RP V +N+GF+ QL+
Sbjct:   17 QDNVPVEIAAG-LFVGSIHAAFNVEGLKANKISHVLNLAGSYATFPEDFTYLSLSIRDKEYASLLSCLPIAAVFIDAGLK-HGGVLVHCAGGRSRSPAVAMAFLMMKQQMTYSVVSAHMKALRPVVSLNVGFDAQLK 151          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131628 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX1_9STRA1.930e-92100.00Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A835Z9L3_9STRA9.640e-3351.80MAP kinase phosphatase with leucine-rich repeats p... [more]
A0A836CLF0_9STRA4.660e-3149.64Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A6G0WNR0_9STRA4.190e-2140.15Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CNA5_PYTOL3.480e-2039.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XN45_9STRA4.800e-2038.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CD61_PYTIN1.250e-1939.29Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A3Y978_9STRA1.300e-1938.69Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W7TWT2_9STRA1.700e-1938.85Dual specificity protein phosphatase 9 n=2 Tax=Nan... [more]
A0A6G0SPF9_9STRA3.050e-1938.69Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:576744..577420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131628|gw1.45.16.1
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
Evalue4.54e-26
Seed ortholog2880.D7FLE7
Hectar predicted targeting categoryother localisation
TranscriptId131950
TrackFilteredModels1
ProteinId131628
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131628gene_6107Tribonema minus UTEX_B_3156 geneContig_45 576744..577420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131628Trimin1|131628|gw1.45.16.1Tribonema minus UTEX_B_3156 polypeptideContig_45 576744..577420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6107_2exon_6107_2Tribonema minus UTEX_B_3156 exonContig_45 576744..576773 -
exon_6107_1exon_6107_1Tribonema minus UTEX_B_3156 exonContig_45 577031..577420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6107CDS_6107Tribonema minus UTEX_B_3156 CDSContig_45 577031..577420 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Trimin1|131628|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_45:576744..577420- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGACGATGCCCTCGCCGCCGTCCTGCCCGGCAAGGTGTACTTCGGCAG
CATCGACGCGGCGTTCAACCTGGAGGGGCTCCAGGCCAAGGGCATCACGC
ACATCATCAACGCCTCCGGCAAGGCCGTCGACATGTACACGGGCGTGCAG
TACTGCAACTTTGCGCTGCGCGACAGGGAGGGCGCGGACGTCCTCGCCGT
CGTCGCGCAGACGAACGAGCTCATTGCGGCAGTGCTCAGGGCGGAGGGGC
GCGTCCTCGTCAACTGCTGGGCGGGCCGCAGCAGGAGCGCCGCGATAGCC
GTGGGCTTCCTCATGGCGAAGCACGGGCGGTCGTACGACGACGCCGTGGA
GCAGCTGCGCGCGCAGCGGCCCGCCGTCAAGATCAACATTGGCTTTGAGA
GGCAACTGCGCGCGTTTGGT
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protein sequence of jgi.p|Trimin1|131628

>Trimin1|131628|gw1.45.16.1 ID=Trimin1|131628|gw1.45.16.1|Name=jgi.p|Trimin1|131628|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
QDDALAAVLPGKVYFGSIDAAFNLEGLQAKGITHIINASGKAVDMYTGVQ
YCNFALRDREGADVLAVVAQTNELIAAVLRAEGRVLVNCWAGRSRSAAIA
VGFLMAKHGRSYDDAVEQLRAQRPAVKINIGFERQLRAFG
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mRNA from alignment at Contig_45:576744..577420-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Trimin1|131628|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=677bp|location=Sequence derived from alignment at Contig_45:576744..577420- (Tribonema minus UTEX_B_3156 )
CAGGACGATGCCCTCGCCGCCGTCCTGCCCGGCAAGGTGTACTTCGGCAG CATCGACGCGGCGTTCAACCTGGAGGGGCTCCAGGCCAAGGGCATCACGC ACATCATCAACGCCTCCGGCAAGGCCGTCGACATGTACACGGGCGTGCAG TACTGCAACTTTGCGCTGCGCGACAGGGAGGGCGCGGACGTCCTCGCCGT CGTCGCGCAGACGAACGAGCTCATTGCGGCAGTGCTCAGGGCGGAGGGGC GCGTCCTCGTCAACTGCTGGGCGGGCCGCAGCAGGAGCGCCGCGATAGCC GTGGGCTTCCTCATGGCGAAGCACGGGCGGTCGTACGACGACGCCGTGGA GCAGCTGCGCGCGCAGCGGCCCGCCGTCAAGATCAACATTGTGAGTGCCG CGCGCGCGATTGCGCGTCGCTCGGTGGCGTGACCTGCGCCTGCGACTGCA TCGCCGACAGTGCGTCAAGTGGAGGCGAGCAACGACAGGGCCATGCAATG CCGTCATTTGAATGCCGCAGCCTTGCATTGCCCGACGGCAAGCGCCTGCC TCATGTCGTTCTGCACTGAATTGTAACATCACGCACAAAAAACCATGTGC ACGCTGACGATGTACTGCACACCACTGCGCATTGCCACGCCTTGCAGGGC TTTGAGAGGCAACTGCGCGCGTTTGGT
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Coding sequence (CDS) from alignment at Contig_45:576744..577420-

>mRNA_6107 ID=mRNA_6107|Name=jgi.p|Trimin1|131628|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_45:576744..577420- (Tribonema minus UTEX_B_3156 )
CAGGACGATGCCCTCGCCGCCGTCCTGCCCGGCAAGGTGTACTTCGGCAG
CATCGACGCGGCGTTCAACCTGGAGGGGCTCCAGGCCAAGGGCATCACGC
ACATCATCAACGCCTCCGGCAAGGCCGTCGACATGTACACGGGCGTGCAG
TACTGCAACTTTGCGCTGCGCGACAGGGAGGGCGCGGACGTCCTCGCCGT
CGTCGCGCAGACGAACGAGCTCATTGCGGCAGTGCTCAGGGCGGAGGGGC
GCGTCCTCGTCAACTGCTGGGCGGGCCGCAGCAGGAGCGCCGCGATAGCC
GTGGGCTTCCTCATGGCGAAGCACGGGCGGTCGTACGACGACGCCGTGGA
GCAGCTGCGCGCGCAGCGGCCCGCCGTCAAGATCAACATTGGCTTTGAGA
GGCAACTGCGCGCGTTTGGT
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