mRNA_6106 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349557
Unique NamemRNA_6106
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349557 vs. uniprot
Match: A0A835YS66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS66_9STRA)

HSP 1 Score: 438 bits (1127), Expect = 9.490e-154
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 
Query:    1 MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 741
            MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF
Sbjct:    1 MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAXXXXXXXPLAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 247
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BLAST of jgi.p|Trimin1|349557 vs. uniprot
Match: A0A6H5KVA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.630e-15
Identity = 74/244 (30.33%), Postives = 113/244 (46.31%), Query Frame = 1 
Query:   16 QVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDADGGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLLQLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGF-GAAXXXXXXXP-LAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEXXXXXXXXARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF 741
             V  AAAG +P+L+FG DA  ++ +A++ + A+++   +   DA     +    +L   ++ E                      L PAF  H   LR  F ++F+  FS +     DF   +  M +     F  A        P +A  W     AE V+L   ++ RV DRL+EG  ++  +  E+         + P WK L++R  A+  NY QATQ +R ARK SERRE+ +PR PLF
Sbjct:  413 DVEAAAAGEMPLLQFGTDAQGIVDEAVQSFLAKSSRSQI---DAPAAVLREKRGSLVSAVARE----------------------LEPAFRAHARHLRGHFHEQFEEMFSCVLGGAADFDQSSRRMSKTIRQNFLEATKLAIPNTPGVADVWRLHWEAELVKLNEDMESRVQDRLSEGTWMLPPDPAEQAAAARK---KTPWWKGLVLRAAAMYFNYLQATQHLRRARKASERRERDVPRLPLF 628
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349557 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YS66_9STRA9.490e-154100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KVA5_9PHAE8.630e-1530.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:571752..574520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349557|estExt_Genemark1.C_Ctg_450072
DescriptionGTP binding
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
Evalue4.29e-09
Seed ortholog2880.D8LCC3
Hectar predicted targeting categoryother localisation
TranscriptId349879
TrackFilteredModels1
ProteinId349557
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349557gene_6106Tribonema minus UTEX_B_3156 geneContig_45 571752..574520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349557Trimin1|349557|estExt_Genemark1.C_Ctg_450072Tribonema minus UTEX_B_3156 polypeptideContig_45 571752..574370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6106_1exon_6106_1Tribonema minus UTEX_B_3156 exonContig_45 571752..571769 +
exon_6106_2exon_6106_2Tribonema minus UTEX_B_3156 exonContig_45 572372..572551 +
exon_6106_3exon_6106_3Tribonema minus UTEX_B_3156 exonContig_45 572912..573044 +
exon_6106_4exon_6106_4Tribonema minus UTEX_B_3156 exonContig_45 573641..573975 +
exon_6106_5exon_6106_5Tribonema minus UTEX_B_3156 exonContig_45 574293..574520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6106CDS_6106Tribonema minus UTEX_B_3156 CDSContig_45 571752..571769 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6106UTR3_6106Tribonema minus UTEX_B_3156 three_prime_UTRContig_45 574371..574520 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Trimin1|349557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=894bp|location=Sequence derived from alignment at Contig_45:571752..574520+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTTGGCATACAGGTCACAAACGCCGCCGCAGGCGGCGTGCCGAT
CCTTGAGTTCGGCCCGGACGCGGCGGCGGTGCTCCGCGATGCGCTGCGGC
AGTGGGGGGCGGAGGCGGCAAGCCTGGTGCTGCCTGCAGACGATGCGGAC
GGCGGCGCTTTCAAGAGTACGTCCAGCGCGCTAACGGAGCCTCTATCGGA
CGAGCCGGCGCCGGAGCGCTCGCCGGAGGAGCAGTGGAGGCTGCGTCTCG
AGACGCGCTTGGGGGCCGTGCTGGGGCCCGCATTTGAGCTGCACCTGCTG
CAGCTGCGGGAGCTGTTTGAGGACCGCTTTGATGCCAAGTTCTCCCCGCT
GGACAGGGAAGTGCCGGACTTTGCCGCCCAGGCGGAGGCCATGGTGCGCG
ACGCGGAGGCGGGATTCGGCGCCGCCGCCGCTGCTGCCGCGCCGCCGCCG
CTGGCGCCGCGCTGGTACCCGCTGGCGGCAGCGGAGGCTGTGCAGCTGCG
GCGGTCGCTGGACGACAGAGTGGCGGACAGGCTGGCGGAAGGGGGGGCGG
TGGTGGAGGGGGAGGGGGAGGAGGAGGGGGGGGAGGCGGCGGCAGCAGCG
GCGCGGCCGCCGCGGTGGAAGGTGCTGCTGGTCCGCGGCCTCGCCCTGGG
GCTTAACTACTTCCAGGCGACGCAAGCCATGCGAACGGCGCGAAAGGAGA
GCGAGCGGCGTGAGCAGAGGATGCCACGGTACCCCCTGTTTTGAGGGCGT
GGTGAAGGCCGTCGTACGCGTCACCAGTGGCCGCCCCGTCTGTAGGATCA
GCCACATGGCAGCCGAATGCATGTGGACGGCAGGCGCATGCGCCGTCTAA
GCACGGTGTCAAGCAGCCTCCAATGTATACTTGCGTGAACTTGA
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protein sequence of jgi.p|Trimin1|349557

>Trimin1|349557|estExt_Genemark1.C_Ctg_450072 ID=Trimin1|349557|estExt_Genemark1.C_Ctg_450072|Name=jgi.p|Trimin1|349557|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
MSFGIQVTNAAAGGVPILEFGPDAAAVLRDALRQWGAEAASLVLPADDAD
GGAFKSTSSALTEPLSDEPAPERSPEEQWRLRLETRLGAVLGPAFELHLL
QLRELFEDRFDAKFSPLDREVPDFAAQAEAMVRDAEAGFGAAAAAAAPPP
LAPRWYPLAAAEAVQLRRSLDDRVADRLAEGGAVVEGEGEEEGGEAAAAA
ARPPRWKVLLVRGLALGLNYFQATQAMRTARKESERREQRMPRYPLF*
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mRNA from alignment at Contig_45:571752..574520+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Trimin1|349557|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2769bp|location=Sequence derived from alignment at Contig_45:571752..574520+ (Tribonema minus UTEX_B_3156 )
ATGTCCTTTGGCATACAGGTACACAGGAAGCTATTTAGAGAGAGCGGCAG
TTGATACTGCGTCGCTCCCTTCAATGTCCTCATTAGTATCATCAATGCCA
CAGTTGAATTGGTGTGACCATTATGTAGGCTGCCCGAGTCCTGGCTACCA
TGCAGTATGTAAATGCCTCATTTTCGACATGTGTCTGGCAACAAACTGTG
CGCCACTGGCTCAATCGCATTAATTTATGGCAGAAGTTGGATACACATGT
CAACTGCCATGGATAGCTTTGACGCAGGTCAGGCAAGCACCCCCACATTG
CTTCTGCAGTGGGCTCGACCCATGGTGTGTGTCATGTCCCATCTGTCACT
GGAGCTTTGCATACACCAGTACTCGTCCAGACCCGAGCGAAACTCACAGC
CAGGGCCAGCCCTGATTGCCGATGTGCATGACTTGTGCGTTGCTGGACAG
CGTCCCACACGACTGGCACCATCAGCTTGCAGGAGATGAGCGGCGCCACG
CCAGAGCATGAGCCGCGTCAACAGCGACGGAGTGTAATCACGTTTGGCGC
AATGCGCCGCAATCGTTCCACGCCACCTGTCGTCACCGCAGCGTACTTGA
CGTACCGTGTCGCTTCACAGGTCACAAACGCCGCCGCAGGCGGCGTGCCG
ATCCTTGAGTTCGGCCCGGACGCGGCGGCGGTGCTCCGCGATGCGCTGCG
GCAGTGGGGGGCGGAGGCGGCAAGCCTGGTGCTGCCTGCAGACGATGCGG
ACGGCGGCGCTTTCAAGAGTACGTCCAGCGCGCTAACGGAGCCTCTATCG
GTGCGTGCAACGGGCCTCGTCCCTGCGCCAAATTGCCGTGTACCCCTATC
AGCTTAGCGCTACAAGCAGGCATTGTCATCACAAAACTACCGATAATGGT
GATATATGATGTGTTGCGAGGTGGCAAGCGGGTGTGACGTGCTCTGAGCG
CTGAGGCGCCTCATGACTGATCATCACCATCAGAGCGCTGCGCAGCGGCG
CGTCACCTGCTGGCACCGCCGGCTTGCAGGCGCGCACTCCTCGCCCCGCC
AGTCACTGCAGCCCTGCCGCCGTTTCCATAGAAGCGCCTCGCAACACCTA
CAGTAGTCAACTTTTGCGATGCGCACTCAAGTCAATCACTGCACTGCCCT
CGCACACCAGGACGAGCCGGCGCCGGAGCGCTCGCCGGAGGAGCAGTGGA
GGCTGCGTCTCGAGACGCGCTTGGGGGCCGTGCTGGGGCCCGCATTTGAG
CTGCACCTGCTGCAGCTGCGGGAGCTGTTTGAGGACCGCTTTGGTGAGGA
CACGCACTGCACCTGCGTCGCTTTCTGTGACGCTTCGTGAAGCATCTTGA
CAAGCGGACTCTCATCTTGGACAGCGTTGAGTGAGGTGGCTGATGCCGTC
CCCTGACGGAGGTGCGCTGTCCGGCGCGACAACATCACCGGCAATGTTAT
GATCCGCTGTCGTCTTGAGATGCGGGCCATACAGGTAGCCTGGTATGCAT
GTATGCACATGACTCCAACTCCCTCTATTGTGCTTCTCACATGCCTCTGG
GGTGTTTGACACGTATATCCCGCGCATTGGCTGAAATACCACATGCACTG
TGTAGCATCATGGCGTCACCATCTCGCGACGGGGGCTACGAATTTGTGGT
TTGGGTGCAGTACTCGGGCTTGCAAGTGTGCCCCCTTGTGTCCGGCATTG
ACATCAGGGCGTGCCACCTGTGTTGATCGTACTGGTCTCATGTGCTCAAT
GACACTTTCTTGCGCTGCCACTGCTGCCGCTAGGCGCACTTTGGTTTCCC
CGTGCCCGCCAGCGCCTGCAATTTCACAGGCTCGCTTTACAGAACCCTGC
CCTCACAGCAGTACTCCTGCCCCCCCCCCCTCGACACAGATGCCAAGTTC
TCCCCGCTGGACAGGGAAGTGCCGGACTTTGCCGCCCAGGCGGAGGCCAT
GGTGCGCGACGCGGAGGCGGGATTCGGCGCCGCCGCCGCTGCTGCCGCGC
CGCCGCCGCTGGCGCCGCGCTGGTACCCGCTGGCGGCAGCGGAGGCTGTG
CAGCTGCGGCGGTCGCTGGACGACAGAGTGGCGGACAGGCTGGCGGAAGG
GGGGGCGGTGGTGGAGGGGGAGGGGGAGGAGGAGGGGGGGGAGGCGGCGG
CAGCAGCGGCGCGGCCGCCGCGGTGGAAGGTGCTGCTGGTCCGCGGCCTC
GCCCTGGGGCTTAACTACTTCCAGGTGCGCGTTTGCGCTTTCTTGACTGA
GCGATGCTTGATGAAGTTAGGTGCCCAGACACTGGAAGCCTCGAGTTGGT
GCTGCGTGGGCCTGCGGGAACGCTGCCCGGTGCAGCGATCTGTGCGCCGC
GGTGACGTGTGCATGCCTCTACCCAGTGCACAATCTGCGGCGCTGCTTTA
TAGCAGGGCCTTCGCGCCTGCCGTCTGCAGCAAGTACAGCGCCGCGCTCC
AACAAGCACCCTGCACGCCGCGCGCGGCAGGGTCTGTGCTGCTGCTGCCA
ATTGACTCCATTGTACCTATGCAAACGCGTGCGCGCTGCAGGCGACGCAA
GCCATGCGAACGGCGCGAAAGGAGAGCGAGCGGCGTGAGCAGAGGATGCC
ACGGTACCCCCTGTTTTGAGGGCGTGGTGAAGGCCGTCGTACGCGTCACC
AGTGGCCGCCCCGTCTGTAGGATCAGCCACATGGCAGCCGAATGCATGTG
GACGGCAGGCGCATGCGCCGTCTAAGCACGGTGTCAAGCAGCCTCCAATG
TATACTTGCGTGAACTTGA
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Coding sequence (CDS) from alignment at Contig_45:571752..574520+

>mRNA_6106 ID=mRNA_6106|Name=jgi.p|Trimin1|349557|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_45:571752..574520+ (Tribonema minus UTEX_B_3156 )
ATGTCCTTTGGCATACAGGTCACAAACGCCGCCGCAGGCGGCGTGCCGAT
CCTTGAGTTCGGCCCGGACGCGGCGGCGGTGCTCCGCGATGCGCTGCGGC
AGTGGGGGGCGGAGGCGGCAAGCCTGGTGCTGCCTGCAGACGATGCGGAC
GGCGGCGCTTTCAAGAGTACGTCCAGCGCGCTAACGGAGCCTCTATCGGA
CGAGCCGGCGCCGGAGCGCTCGCCGGAGGAGCAGTGGAGGCTGCGTCTCG
AGACGCGCTTGGGGGCCGTGCTGGGGCCCGCATTTGAGCTGCACCTGCTG
CAGCTGCGGGAGCTGTTTGAGGACCGCTTTGATGCCAAGTTCTCCCCGCT
GGACAGGGAAGTGCCGGACTTTGCCGCCCAGGCGGAGGCCATGGTGCGCG
ACGCGGAGGCGGGATTCGGCGCCGCCGCCGCTGCTGCCGCGCCGCCGCCG
CTGGCGCCGCGCTGGTACCCGCTGGCGGCAGCGGAGGCTGTGCAGCTGCG
GCGGTCGCTGGACGACAGAGTGGCGGACAGGCTGGCGGAAGGGGGGGCGG
TGGTGGAGGGGGAGGGGGAGGAGGAGGGGGGGGAGGCGGCGGCAGCAGCG
GCGCGGCCGCCGCGGTGGAAGGTGCTGCTGGTCCGCGGCCTCGCCCTGGG
GCTTAACTACTTCCAGGCGACGCAAGCCATGCGAACGGCGCGAAAGGAGA
GCGAGCGGCGTGAGCAGAGGATGCCACGGTACCCCCTGTTTTGA
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