mRNA_6082 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166551
Unique NamemRNA_6082
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A835YUR0_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR0_9STRA)

HSP 1 Score: 327 bits (838), Expect = 2.910e-113
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 
Query:    1 MSLIPRSFGGGWGSPFDEFATDVMPWGGGMGAVSXXXXXMMGGMMGGPLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            MSLIPRSFGGGWGSPFDEFATDVMPWGGGMGAVSXXXXXMMGGMMGGPLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR
Sbjct:    1 MSLIPRSFGGGWGSPFDEFATDVMPWGGGMGAVSXXXXXMMGGMMGGPLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 165
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A836C9J5_9STRA (HSP20-like chaperone n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.070e-23
Identity = 43/108 (39.81%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:  172 MLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            +L  D+++T+T ++M+ D+PGV+K++I ++VDE+  + T++TE++ EK++    GW  RER+ G+A RT  LP  +D +K  V  ++G LH   PK E P  R L+I+
Sbjct:   51 LLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 158
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A3D1IXG7_9BURK (Stress protein n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A3D1IXG7_9BURK)

HSP 1 Score: 85.1 bits (209), Expect = 5.370e-18
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  142 PLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            P  R V +P  + +D+ ETD  Y ++ D+PGV K+DI+VS+D N+   +VS E + EKE    AG    ER  G+  R   LP + D  K   +YENGVLH+  PK     G++L+I+
Sbjct:   34 PTLRGVESPPRIRIDVSETDNDYLVKADIPGVKKEDIKVSIDGNQ--VSVSAEVKEEKEAGG-AGMLRSERYYGQEFRAFTLPQEVDDKKAVAKYENGVLHLTLPKKHGTGGKQLSIQ 148
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A3M1IGC7_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3M1IGC7_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 4.780e-16
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:  178 AMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            ++DI E   GY +R +VPGV K+D+ V+V+++  T  ++ EK+ EKE+ D  G+H  ERS G   R I+LP D+D +K++ R+ NGVL +  PK E   G R A+R
Sbjct:   75 SVDISENRKGYTIRVEVPGVEKEDLSVTVEDD--TLVIAGEKKQEKEE-DEGGYHCVERSYGAFRRLISLPADADQDKLEARFRNGVLTITIPKVE---GARSAVR 174
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A7C2QRY0_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7C2QRY0_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 2.150e-15
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:  139 GPLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAG-WHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            G L+ ++ AP     D+ ET+    +  ++PGV  +DI+V ++ N    TVS EK+ E+ + D    WH  ER  GR  R+  LP D +++K++ RYENGVL++  PK+E    RR+ IR
Sbjct:   29 GRLSWTLQAP---PADVVETENDIRVMVELPGVRLEDIQVDLENN--VLTVSGEKKEERREGDERDVWHLSERRYGRFSRSFVLPRDVEADKIEARYENGVLYLTIPKTEQARRRRIEIR 143
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: UPI0010A3EA89 (Hsp20/alpha crystallin family protein n=1 Tax=Herbaspirillum sp. ST 5-3 TaxID=2567936 RepID=UPI0010A3EA89)

HSP 1 Score: 78.2 bits (191), Expect = 2.560e-15
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  142 PLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            P  R + A   + MD+ ET+  Y ++ D+PGV K+DI+V++D N    ++  E + EKE+        +ER  G   R+  LP D D +KV+ +Y++GVL +M PK      +++ I+
Sbjct:   33 PSLRGMEAEPRIRMDVSETEQAYQIKADIPGVKKEDIKVAIDGN--VVSIRAETKEEKEEKMEGNMVRKERHYGEQYRSFTLPQDVDESKVEAKYQDGVLSLMLPKKAGGTTKQITIQ 148
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A031GWS0_9BURK (Heat shock protein Hsp20 n=25 Tax=Janthinobacterium TaxID=29580 RepID=A0A031GWS0_9BURK)

HSP 1 Score: 78.2 bits (191), Expect = 2.690e-15
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  175 LAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTR-ERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            + +DI ET+  Y ++ D+PGV KDDI+VS+D NR   ++S E + E+   D  G   R ER  G+  R+  LP + D      RYENGVL +  PK E   GR+L+I+
Sbjct:   45 MRVDISETEQAYQVQADIPGVNKDDIKVSIDGNR--VSISAELKDERVTRDGGGKTVRSEREYGQQYRSFVLPHEVDEAGAQARYENGVLLLDLPKKEGTGGRQLSIQ 150
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A6I1IHH1_9BURK (Hsp20 family protein n=1 Tax=Janthinobacterium violaceinigrum TaxID=2654252 RepID=A0A6I1IHH1_9BURK)

HSP 1 Score: 78.2 bits (191), Expect = 2.690e-15
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:  175 LAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTR-ERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            + +DI ET+  Y ++ D+PGV+KDDI+VS+D NR   ++S E++ E+E  D  G   R ER  G+  R+  LP + D      RY++GVL +  PK E   GR+LAI+
Sbjct:   45 MRVDISETEQTYLVQADLPGVSKDDIKVSIDGNR--VSISAERKNERETRDAGGKIVRSEREYGQQYRSFVLPQEVDDAGAQARYQDGVLLLDLPKKEGTGGRQLAIQ 150
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: A0A4V1TDZ7_9BURK (Hsp20/alpha crystallin family protein n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A4V1TDZ7_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 3.610e-15
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  142 PLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            P  R++ A   +  DI ETD GY ++ ++PGV K+DI++SV+ NR   +++ E + EKE+    G    ER  G+  R+  LP + D  K + RYENG+L +  PK      ++L I+
Sbjct:   34 PSLRNMQAEPRIRADISETDQGYTVKAEIPGVKKEDIKISVEGNR--VSINAEVKEEKEE-KTTGMVCSERYYGQESRSFTLPQEVDDAKAEARYENGMLMLTLPKKPGTGAKQLTIK 148
[Close]
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Match: UPI0004742C01 (Hsp20/alpha crystallin family protein n=1 Tax=Herminiimonas sp. CN TaxID=1349818 RepID=UPI0004742C01)

HSP 1 Score: 77.4 bits (189), Expect = 5.200e-15
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  142 PLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 495
            P   S+ +   + MD+ ETD  Y ++ ++PGVTK+DI+VS++ N+ + +  T+K TE++  +       ER  G+  R+  L  D D  K +  Y+NGVL +  PK   P G++L ++
Sbjct:   34 PTWSSLPSTPRIKMDVTETDKNYVVKAEIPGVTKEDIKVSIEGNQVSISAETKKETEEKSGETVV--RSERYYGQQYRSFTLACDVDEEKSEASYQNGVLELTLPKKSGPAGKQLLVK 149
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166551 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUR0_9STRA2.910e-113100.00HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A836C9J5_9STRA8.070e-2339.81HSP20-like chaperone n=3 Tax=Tribonema minus TaxID... [more]
A0A3D1IXG7_9BURK5.370e-1840.68Stress protein n=1 Tax=Oxalobacteraceae bacterium ... [more]
A0A3M1IGC7_9BACT4.780e-1643.40Hsp20/alpha crystallin family protein n=1 Tax=Verr... [more]
A0A7C2QRY0_9BACT2.150e-1538.33Hsp20/alpha crystallin family protein n=1 Tax=Gemm... [more]
UPI0010A3EA892.560e-1533.90Hsp20/alpha crystallin family protein n=1 Tax=Herb... [more]
A0A031GWS0_9BURK2.690e-1541.67Heat shock protein Hsp20 n=25 Tax=Janthinobacteriu... [more]
A0A6I1IHH1_9BURK2.690e-1541.67Hsp20 family protein n=1 Tax=Janthinobacterium vio... [more]
A0A4V1TDZ7_9BURK3.610e-1536.44Hsp20/alpha crystallin family protein n=1 Tax=Oxal... [more]
UPI0004742C015.200e-1533.90Hsp20/alpha crystallin family protein n=1 Tax=Herm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:400650..403586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166551|e_gw1.45.100.1
DescriptionHsp20/alpha crystallin family
COG categoryO
Max annot lvl119069|Hydrogenophilales
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N1RF@1224|Proteobacteria,2VT18@28216|Betaproteobacteria,1KT0Q@119069|Hydrogenophilales
Evalue2.23e-16
Seed ortholog1123393.KB891316_gene2071
Hectar predicted targeting categoryother localisation
TranscriptId166873
TrackFilteredModels1
ProteinId166551
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166551gene_6082Tribonema minus UTEX_B_3156 geneContig_45 400650..403586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166551Trimin1|166551|e_gw1.45.100.1Tribonema minus UTEX_B_3156 polypeptideContig_45 400650..403586 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6082_4exon_6082_4Tribonema minus UTEX_B_3156 exonContig_45 400650..400682 -
exon_6082_3exon_6082_3Tribonema minus UTEX_B_3156 exonContig_45 401364..401567 -
exon_6082_2exon_6082_2Tribonema minus UTEX_B_3156 exonContig_45 402697..402906 -
exon_6082_1exon_6082_1Tribonema minus UTEX_B_3156 exonContig_45 403536..403586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6082CDS_6082Tribonema minus UTEX_B_3156 CDSContig_45 403536..403586 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Trimin1|166551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=498bp|location=Sequence derived from alignment at Contig_45:400650..403586- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCATCCCTAGGAGTTTTGGTGGCGGCTGGGGCTCGCCCTTCGA
CGAGTTCGCCACGGACGTCATGCCGTGGGGCGGCGGCATGGGGGCCGTGA
GCCCCTGGGGCGGCGGCATGATGGGGGGCATGATGGGGGGCCCCCTGGCC
CGCAGCGTCATGGCCCCTAACATGCTCGCCATGGACATCCGCGAGACCGA
CACGGGCTACGACATGCGCTTCGACGTGCCCGGCGTGACCAAGGACGACA
TCCGGGTGTCGGTCGACGAGAACCGCCGCACCGCCACCGTCTCCACAGAG
AAGCGCACCGAGAAGGAGGACTGGGACCCGGCCGGCTGGCATACGCGCGA
GCGCTCCGCGGGGCGCGCCATGCGCACCATCGCGCTGCCCTGGGACTCCG
ACTCCAACAAGGTCGACGTACGCTACGAGAACGGCGTCCTGCACATGATG
TGCCCCAAGTCGGAGACGCCCCCCGGCAGGCGCCTCGCCATCAGGTGA
back to top

protein sequence of jgi.p|Trimin1|166551

>Trimin1|166551|e_gw1.45.100.1 ID=Trimin1|166551|e_gw1.45.100.1|Name=jgi.p|Trimin1|166551|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=166bp
MSLIPRSFGGGWGSPFDEFATDVMPWGGGMGAVSPWGGGMMGGMMGGPLA
RSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTE
KRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMM
CPKSETPPGRRLAIR*
back to top

mRNA from alignment at Contig_45:400650..403586-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Trimin1|166551|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2937bp|location=Sequence derived from alignment at Contig_45:400650..403586- (Tribonema minus UTEX_B_3156 )
ATGTCTCTCATCCCTAGGAGTTTTGGTGGCGGCTGGGGCTCGCCCTTCGA
CGTGGGCACAATGAGCACCTATCGCCCACGGGGGCTCTTCGATGTGAGTT
GCAGTATGACGGAGTTTGCAGTATCATAGCTGACCTCCGGTAATCGTAAG
CCTTACGCCCGTGTCTCGCTCGAGGTAGATTAGCTGAAGGCCCCCAGTAA
GCGGTGTCCTTGCACGGCCGGCTGGCAAATTGGTGTTCGCTGGAGTTTGG
CTATCATGTTGAAGCACCGATACAGCTTGCTCACACGCTGTCTTCTCTTG
CTGCGCACCTTGCAGCACAAAGGGCAGCATACTTGTGGCATCCGTCTAGA
GCGGAGCGTCAAACAGCTGCGATAGCAGTCATTTTCGGCTCGAGATCTCG
CATCGAATACCCTTTCTGCAAACCCAGCGAGCGAGAGGCTCCATCACGAC
TGTATTCAAGCACGAGTTTGCTGCAACTTTGACGGCATGACGGTGTTTGT
GAGTCTGCTATGGTGCGTCTAACTCACCGCTCCTCCATGCGTGAGGTCTG
CCCTGCAAACACCTCTAGCTGTCGAAAACTCCACAATGGCAAATCACTTG
AGGTAGCCTCGTCACATCCTTGACGCGTACACACGTCATACTCCCCCTCC
CCCCCCCCCTTTCTACCGCCTCCGCAGCAGGAGTTCGCCACGGACGTCAT
GCCGTGGGGCGGCGGCATGGGGGCCGTGAGCCCCTGGGGCGGCGGCATGA
TGGGGGGCATGATGGGGGGCCCCCTGGCCCGCAGCGTCATGGCCCCTAAC
ATGCTCGCCATGGACATCCGCGAGACCGACACGGGCTACGACATGCGCTT
CGACGTGCCCGGCGTGACCAAGGACGACATCCGGGTGTCGGTGAGTCACG
CCCTCATGCGCGTCCGGGGGGGGGGGGGGGGGGGGGGGCTGTGCTTGCTC
TGCTTGAAGTGCGTGACAGGTCGGATGTGTATGTCATGAAACCTCATCAG
AGTGGCAGTTTAGGGCGGTGCTGCGCGTGCGCTTCGAGCGCGGGGCACGA
CGAGCGTCTTCAAGTTGATGTTGCCCTGCATGGAAGTTACCGTAAGATCA
AGTCTTATGGTGCTGTTCATCATATGCTTCGACGCATCAATTGTTCATCA
AGACTTCATGGCGGCCATCCAGACGTAGGTTTGCGCCGGCAATCCGGTTC
ACTACTTGAGGACCACTACCACCTTGTATGCACCCTTTCTGCAGGCACTG
AAGGCGCTTGCAGATATTCATGTACACCCCCAGCCCTTGCAGCTCATCGA
GCCTCGCTGTACCACGCGCTATGACCTTAGCGCAGAACTTATTTTCCCTC
TCAAACTACATTTCAGCACACACACACACACACACACACACACACACACA
CACACACACACACACACACCGCAGCAGCTCATCAAGCACCGCCACCCCAG
ACCGCCGCCCGCCGTCAGCATCAGGTCATACAGTCACTTTCCCGCAGCAC
TCACTGTACAGGCAGCGTTGAGATCGAGCAGCAGTACGCTGACAGAATTC
CGGAAAGTCTCACACAGTTGGGTGTTCTGCGATTGACAGTTGGTTGCCAT
TGTGCGCCTGTTTGACCGTGATAGAAAGTACTGCGCAGAGAGCCTCGTCT
GCACACTCACGGCCACTTCCTGCAGGTGTGCGCCTTTGTTTTGTGCCTTC
TTGCTGCACGTGGCGCGCTGACCTGACCGCATGATAGACGTGTGCTCAAT
AATAATGCGCAGCGCCTGTCACCGCCCGTCGGCGCATCCCCCACGTGGAC
CTCGTCACCAGCACGCCGCCAACGCCCCCCCCCCCCGCCCGCAAGAGCTC
TGGGCATGAGATCTACAGCTTCTGCATACATCAGATTCTCCGCCGCTGCA
TCTCATCAGAGCGAGCGCACCCGCATTCCTTCCAGTCTTGAAGCACACTC
CATGCCGCACCGCACTCCACCGCTGCACAGCAGTGACCCCCCCCCCCCCC
TCCTTGTCCCCCATCGCAGGTCGACGAGAACCGCCGCACCGCCACCGTCT
CCACAGAGAAGCGCACCGAGAAGGAGGACTGGGACCCGGCCGGCTGGCAT
ACGCGCGAGCGCTCCGCGGGGCGCGCCATGCGCACCATCGCGCTGCCCTG
GGACTCCGACTCCAACAAGGTCGACGTACGCTACGAGAACGGCGTCCTGC
ACATGATGTGCCCCAAGTCGGAGGTGAGAGCACGGGGGGGGGGTGAAGGG
GGGGGGCGGGGGTGTTGAGGTAGAGGGGATGGGGGGGGGTGTCGTGTTGA
GAGAGGTACTTCGGGTTGCTGGTTTGTGAAGAGATTCAATGACTGCGCGT
CCTTCTGCTCTGCGTGCCTTGACGGCATGTCAAGTGTGTACCTCAACTGA
ACTGTGAGGCTGTACCTCAATTGTACTATCAGGATGAAGTAAGCCTTTGC
AAGTAAGCCTTTGCGCGCCTGCACGACCACCACAGAGATGCATGCAATCA
CTCCACACCCCACGCTTGCGGGCCCTGTTGACACAGACACGGGAGCATGT
ACAGGCCCGTCGCGGTACTTGAGAGCAGTAGTCTGCGCTGCACATGGAAC
GCACCACTGTACTGTCCATTGTACGTCATGCCGGATGTCCTTTTCAATGC
TGAGTAACACTTTCATAATTCTAGGTTTGACTCAGTGTGTTGACTGGAAT
GACGAGCAAGCATCTGGTGAGGCGTCCCCGCATTTTCAAGACTCTTTTCT
AACCAGCAGCATACTATTTATGGTGTACACACATTTGTATCGTGTTCGTG
AAGGTCAGCAGTATCATAGCATGAGAGCAAACTATCTTCACAGCATGAAG
TAGCTGATTGACCATGATTCGATGCTGTGCCCCCCGCTCCCCCCCCCCCC
CCAGACGCCCCCCGGCAGGCGCCTCGCCATCAGGTGA
back to top

Coding sequence (CDS) from alignment at Contig_45:400650..403586-

>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Trimin1|166551|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=498bp|location=Sequence derived from alignment at Contig_45:400650..403586- (Tribonema minus UTEX_B_3156 )
ATGTCTCTCATCCCTAGGAGTTTTGGTGGCGGCTGGGGCTCGCCCTTCGA
CGAGTTCGCCACGGACGTCATGCCGTGGGGCGGCGGCATGGGGGCCGTGA
GCCCCTGGGGCGGCGGCATGATGGGGGGCATGATGGGGGGCCCCCTGGCC
CGCAGCGTCATGGCCCCTAACATGCTCGCCATGGACATCCGCGAGACCGA
CACGGGCTACGACATGCGCTTCGACGTGCCCGGCGTGACCAAGGACGACA
TCCGGGTGTCGGTCGACGAGAACCGCCGCACCGCCACCGTCTCCACAGAG
AAGCGCACCGAGAAGGAGGACTGGGACCCGGCCGGCTGGCATACGCGCGA
GCGCTCCGCGGGGCGCGCCATGCGCACCATCGCGCTGCCCTGGGACTCCG
ACTCCAACAAGGTCGACGTACGCTACGAGAACGGCGTCCTGCACATGATG
TGCCCCAAGTCGGAGACGCCCCCCGGCAGGCGCCTCGCCATCAGGTGA
back to top