mRNA_6080 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166576
Unique NamemRNA_6080
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A835YVU6_9STRA (Heat shock transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU6_9STRA)

HSP 1 Score: 163 bits (412), Expect = 6.000e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MSCVLLLHLQAPALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKVRYTRP 246
            MSCVLLLHLQAPALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKVRYTRP
Sbjct:    1 MSCVLLLHLQAPALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKVRYTRP 82
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A835ZDM3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.310e-23
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            APALF+SALV+IL G   DI++W  SG  F+I+D++RF++E+L  HFKHN+LSSFQRQLNLYGFRK+
Sbjct:   32 APALFLSALVDILRGGYEDIIAWNPSGTCFMIRDAERFSDEVLVHHFKHNKLSSFQRQLNLYGFRKI 98
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.880e-17
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP +F   L EIL     DI+ WT SGK FIIK+ + F   IL ++F+H + SSFQRQLNLYGFRKV
Sbjct:   11 APQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKV 77
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.970e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP +F   L EIL    +D++ WT+SGK FII + + F NEIL  +F+H + SSFQRQLNLYGFRK+
Sbjct:  103 APQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKI 169
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A6H5JVV9_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVV9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.230e-16
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP  F S L EIL G N DIV WTA+G+GF ++D  R ++E+L R FK ++ SSFQRQLNLYGFRK+
Sbjct:   58 APQAFPSKLYEILEGENPDIVGWTATGRGFEVRDHARLSSEVLGRFFKQDKFSSFQRQLNLYGFRKI 124
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.900e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP +F   L EIL   ++DI+SWT +G  F+I++ D F NEIL ++F+H + SSFQRQLNLYGFRK+
Sbjct:   81 APQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKI 147
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.470e-15
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP +F   L EIL   + D +SWT SG  F+IKD + F   +L ++F+H + SSFQRQLNLYGFRK+
Sbjct:   73 APQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKI 139
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 8.020e-15
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP  F   L EIL     D++SW A+G  F ++D DRF+ EIL ++F+H++ +SFQRQLNLYGFRK+
Sbjct:   11 APQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKI 77
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A835Z6Z9_9STRA (HSF-type DNA-binding-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP  F   L E+L   +  +VSW  +G+GFII D D F N  L ++F+HN+ +SFQRQ NLYGFRK+
Sbjct:    5 APQAFPRRLYELLQEEDASVVSWIKNGEGFIINDMDTFVNTTLVKYFQHNKYTSFQRQCNLYGFRKI 71
[Close]
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Match: A0A6V2VRS5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VRS5_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 3.750e-14
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   31 APALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFANEILQRHFKHNRLSSFQRQLNLYGFRKV 231
            AP +F   L +IL   + D++ W   G  F IKD DRF+ E+L ++F+HN  SSFQRQ+NLYGF+K+
Sbjct:   18 APQVFARKLYQILLTESKDVICWNEPGTAFFIKDMDRFSQEVLMKYFRHNNYSSFQRQMNLYGFKKI 84
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166576 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVU6_9STRA6.000e-51100.00Heat shock transcription factor n=1 Tax=Tribonema ... [more]
A0A835ZDM3_9STRA2.310e-2365.67HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2BSE7_9STRA8.880e-1756.72Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2G7U9_9STRA1.970e-1655.22Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6H5JVV9_9PHAE2.230e-1659.70HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2CXJ7_9STRA1.900e-1555.22Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R5C8_9STRA6.470e-1552.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1QFS1_HETAK8.020e-1552.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z6Z9_9STRA1.710e-1450.75HSF-type DNA-binding-domain-containing protein (Fr... [more]
A0A6V2VRS5_HETAK3.750e-1449.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:380378..380832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166576|e_gw1.45.91.1
BRITEko00000,ko03000
KEGG koko:K09415
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001161,GO:0001162,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009635,GO:0009636,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0014070,GO:0016043,GO:0016070,GO:0017085,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032504,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046677,GO:0046685,GO:0046983,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097327,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1902074,GO:1902680,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903935,GO:1990837,GO:2000112,GO:2001141
Preferred nameHSF2
Descriptionheat shock
COG categoryK
Max annot lvl33208|Metazoa
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,38BXQ@33154|Opisthokonta,3BIV6@33208|Metazoa,3CY5W@33213|Bilateria,480GJ@7711|Chordata,492NQ@7742|Vertebrata,4GQUD@8782|Aves
Evalue8.75e-14
Seed ortholog59894.ENSFALP00000011796
Hectar predicted targeting categorysignal peptide
TranscriptId166898
TrackFilteredModels1
ProteinId166576
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166576gene_6080Tribonema minus UTEX_B_3156 geneContig_45 380378..380832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166576Trimin1|166576|e_gw1.45.91.1Tribonema minus UTEX_B_3156 polypeptideContig_45 380378..380832 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6080_2exon_6080_2Tribonema minus UTEX_B_3156 exonContig_45 380378..380497 -
exon_6080_1exon_6080_1Tribonema minus UTEX_B_3156 exonContig_45 380704..380832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6080CDS_6080Tribonema minus UTEX_B_3156 CDSContig_45 380704..380832 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6080 ID=mRNA_6080|Name=jgi.p|Trimin1|166576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_45:380378..380832- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATGTGTGCTGCTTTTGCACTTGCAGGCTCCAGCCCTGTTTATATC
AGCCCTGGTTGAAATCCTGGGTGGCCTCAACAACGACATTGTAAGCTGGA
CCGCGAGCGGGAAGGGCTTCATCATCAAAGACTCCGATCGGTTTGCCAAT
GAGATCCTGCAGCGGCACTTCAAACACAACCGGCTCTCGAGCTTCCAGCG
CCAGCTGAATCTCTACGGCTTCCGCAAGGTACGTTACACACGCCCGTGA
back to top

protein sequence of jgi.p|Trimin1|166576

>Trimin1|166576|e_gw1.45.91.1 ID=Trimin1|166576|e_gw1.45.91.1|Name=jgi.p|Trimin1|166576|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
MSCVLLLHLQAPALFISALVEILGGLNNDIVSWTASGKGFIIKDSDRFAN
EILQRHFKHNRLSSFQRQLNLYGFRKVRYTRP*
back to top

mRNA from alignment at Contig_45:380378..380832-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6080 ID=mRNA_6080|Name=jgi.p|Trimin1|166576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=455bp|location=Sequence derived from alignment at Contig_45:380378..380832- (Tribonema minus UTEX_B_3156 )
ATGTCATGTGTGCTGCTTTTGCACTTGCAGGCTCCAGCCCTGTTTATATC
AGCCCTGGTTGAAATCCTGGGTGGCCTCAACAACGACATTGTAAGCTGGA
CCGCGAGCGGGAAGGGCTTCATCATCAAAGTGAGTGCTTGTTGCATATAA
AGTGACGTGTCATGAACTGTCTCATGACGCAAAGTTCAAGTGCTGTAACT
GTGCACTTCAAGTCTGGTCGGGCGGACGCCGCTTCTGTGCACTGTCCTCG
CTAACTTTCTGACTCCTCAGTGGCGCTGCAATGCCTGCCGTCACCCCTGC
CGTCTTACGTGCTGCCCATCGTCTCTGCCGTGCAGGACTCCGATCGGTTT
GCCAATGAGATCCTGCAGCGGCACTTCAAACACAACCGGCTCTCGAGCTT
CCAGCGCCAGCTGAATCTCTACGGCTTCCGCAAGGTACGTTACACACGCC
CGTGA
back to top

Coding sequence (CDS) from alignment at Contig_45:380378..380832-

>mRNA_6080 ID=mRNA_6080|Name=jgi.p|Trimin1|166576|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_45:380378..380832- (Tribonema minus UTEX_B_3156 )
ATGTCATGTGTGCTGCTTTTGCACTTGCAGGCTCCAGCCCTGTTTATATC
AGCCCTGGTTGAAATCCTGGGTGGCCTCAACAACGACATTGTAAGCTGGA
CCGCGAGCGGGAAGGGCTTCATCATCAAAGACTCCGATCGGTTTGCCAAT
GAGATCCTGCAGCGGCACTTCAAACACAACCGGCTCTCGAGCTTCCAGCG
CCAGCTGAATCTCTACGGCTTCCGCAAGGTACGTTACACACGCCCGTGA
back to top