mRNA_6061 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA) HSP 1 Score: 415 bits (1066), Expect = 1.460e-144 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1
Query: 1 MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL 810
MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL
Sbjct: 1 MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL 270
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA) HSP 1 Score: 256 bits (655), Expect = 1.430e-81 Identity = 188/263 (71.48%), Postives = 216/263 (82.13%), Query Frame = 1
Query: 22 SPRGGVGGRPV-DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQ----HVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPA 795
S RGG +PV DKRRLERNAREQ+RSLKISQ+IDELR LLRQSG+ VK+SKS++LQE T LI L R+Q LE ER H+L LVQ LS + Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASVGMDYQLIFHNAAIPLAV S+NGNIV+CN+RMC TG+RR+ELL LTVFNLVADA+LQ+SFALISG L+ AA A Q HVD+PCK+RDG+PGGVLS++LVRD+++RPRFFAIS++PA
Sbjct: 56 SHRGGP--KPVVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------ASVGMDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAISLAPA 307
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI) HSP 1 Score: 112 bits (280), Expect = 2.320e-24 Identity = 102/364 (28.02%), Postives = 142/364 (39.01%), Query Frame = 1
Query: 55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSA----------------------------------------GGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------ASVG--------------------------------------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGG-VLSVSLVRDDIMRPRFFAISMSPAPTT 804
+KRRLERNAREQKRSLKISQRI++LR +L Q G+ VK SKS VL E T+ I L RQ EAERA +L L+ A GG +G A+ G ++Y+ +F +P+A+ ++NGN+V+CN+R+ TGFR++E L +T+F+LVAD +LQ +F++IS LS G PP +P K+ +G PGG V+ +S V DD +RP F I + +P T
Sbjct: 269 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPP-FFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPAT 631
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.450e-17 Identity = 80/255 (31.37%), Postives = 117/255 (45.88%), Query Frame = 1
Query: 22 SPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQ--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 780
S GG P DKRRL+RNAREQ+RS KI+ +ID+LR +LR +G VK++KS VL E + I+ L +++ ALEA GNT G Y+L F + IP+A+ +++G V+ N R T + + ELL LT+FNL A LQ +F+ +S L + A ++ G L++SLVRDD+ RP +F++
Sbjct: 450 SKAGGKESAP-DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEAA--------------GNTSYPGMGAAADDGWGGQPRRMDQDTWASQPGGFGSGNVASAAVSQATGRLVSEHSYRLAFFDGCIPMAIATMDGCFVDGNKRFVEVTSYSKAELLKLTIFNLTAPHDLQDTFSRVSQMLRSTEDA----PRFSTGAVMKHNIERGYLAISLVRDDLRRPIYFSV 685
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S1UNB1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNB1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.170e-14 Identity = 78/279 (27.96%), Postives = 123/279 (44.09%), Query Frame = 1
Query: 40 GGRPVDK--------RRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGG------------NTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVR---DGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
GGRP K +R ERNARE++RS +IS++I+ELR LL G+ V K +KS VL E N I++L + Q E +R ++ +QM+ G Q +Y+ IF++ ++ +AV S+ G ++CN C + + + E+ LT+FNL + LQ +F LIS +S PA G V PC +R + R LSV+L++ D + F +++ P +
Sbjct: 212 GGRPKKKQKKVLDESKREERNAREKERSFRISKQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRQQLVQQIQMIGGGALGPQAAQTIRHVAAQNGVWSLGNFGGVPPKSAMQFYPDAAAPAATETTPPPGAPDAPLQTKIDDPEYRFIFNSCSVGMAVASMGGAFIDCNELFCQLSNYTKQEVCSLTIFNLTSRQDLQPAFDLISEMISPPAD-GNGSVAVAKPCVLRGSMNNRDDIGLSVALIKGDDGIAKCFCVTLIHNPAS 489
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S0XM67_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XM67_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.180e-14 Identity = 75/261 (28.74%), Postives = 118/261 (45.21%), Query Frame = 1
Query: 61 RRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAG--GNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM-------DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDG---RPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
+R ERNARE++RS +IS++I+ELR LL G+ V K +KS VL E N I++L + Q E +R ++ VQ + +G G +S M DY+ +F++ I +A+ S+ G ++CN C + + + ++ +TVFNL A LQ +F LIS LSAP P + C +R RP LSV L++ + F +++ PT+
Sbjct: 253 KREERNAREKERSFRISKQINELRALLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQVQHIGSGALGPQAAQAVRHVAAKNGVWSLGNFGGVPPKSAMSTIYHPNRAAAPDDAQSSSSSMSNNIEDSDYRHVFNSCTIGMAIASMGGAFIDCNKFFCQISDYTKQQICSMTVFNLTARQDLQSAFDLISQMLSAPL----DPTVTNTSCVLRGALRHRPDVGLSVKLIKGIDGVAKCFCVTLIQNPTS 509
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S4ABX4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABX4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 5.630e-14 Identity = 77/282 (27.30%), Postives = 120/282 (42.55%), Query Frame = 1
Query: 16 CTSPRGGVGGRPV--DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQ-------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDG---RPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
C S GG + D +R ERNARE++RS +IS++I+ELR LL G+ V K +KS VL E N I++L + E +R ++ VQ + +G Q G DY +F++ I +A+ S+ G ++CN+ C + + E+ +TVFNL A + LQ +F LIS LSAP P + C +R R LSV L++ + + F +++ P +
Sbjct: 295 CGSSEGGTNKKKKLDDSKREERNAREKERSFRISKQINELRSLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHHYRSEIDRHQLVQQVQRIGSGALGQQAAQAVRHAAAQNGVWSLGNFGGVPPKSAMMYHQPSGAGAPVADETQSSASNNGTLPNTIEESDYIHVFNSCTIGMAIASMGGAFIDCNNVFCQIANYTKQEICSMTVFNLTARSDLQPAFDLISQMLSAPL----DPNVTNTSCVLRGALKHRTDVGLSVKLIKGNDGVAKCFCVTLINNPAS 572
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.260e-13 Identity = 58/206 (28.16%), Postives = 96/206 (46.60%), Query Frame = 1
Query: 55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVG-------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALS 648
+++R+ERNARE++RS +IS++I+ELR LL G+ V K +KS VL E N I++L + Q E +R ++ +Q++ G + A DY+ IF++ + +A+ S+ G ++CN C + + + E+ LT+FNL A LQ +F LIS +S
Sbjct: 233 ERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQLIGGGAHGAQAAQAIRHVAAQNGVWSLGNFGGIPPKSALLTPNTEKSNNTVTEDAVATDPNKVNTNDYRFIFNSCGVGMAIASMGGAFIDCNQLFCQLSNYTKQEVCSLTIFNLTARQDLQHAFDLISQLIS 438
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: K0SGS0_THAOC (BHLH domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGS0_THAOC) HSP 1 Score: 76.6 bits (187), Expect = 9.720e-13 Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 1
Query: 67 LERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALIS 636
+ERNARE++RS KI+++IDELR LL + G++V K +K VL E N I LL +QQ E +R ++ +Q + A N Q DY+ IF ++ + +A+ ++ G V+CNS + + ++E+ ++T+FN+ + A LQ +F LIS
Sbjct: 1 MERNAREKERSCKIARQIDELRALLSRGGVTVTKGTKITVLAEAANYINLLQQQQVQWEMDRQSLVQQMQQMQA--NAQSAIQGQTGRAITGRTNPLNPTPNPLLPSSSASAISPD-------------DYKHIFESSTVGMAIATLGGAFVDCNSIFSQLSEYTKEEVAVMTIFNMTSRADLQHAFDLIS 176
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A1E7F364_9STRA (BHLH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F364_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.370e-12 Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 1
Query: 55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM---------------DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAP 654
+ +R ERNARE++RS +IS++I+ELR LL G+ V K +KS VL E N I++L + Q E +R ++ VQ + +G Q ++ DY+ +F++ I +A+ S+ G ++CN C + + + E+ +TVFNL + LQ +F LIS LSAP
Sbjct: 30 ESKREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQVQRIGSGALGQEAASAVRHVAAQNGVWSLGNFGGVPPKSAMMYHQPSGPIADEPTSSADSASSLNGSTLPSKIEESDYRQVFNSCTIGMAIASMGGAFIDCNKLFCNISNYTKQEICSMTVFNLTSRQDLQSAFDLISQMLSAP 245 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGCACTTGCCTTGTACCAGCCCGAGGGGAGGGGTAGGGGGCAGACCback to top protein sequence of jgi.p|Trimin1|166633 >Trimin1|166633|e_gw1.45.106.1 ID=Trimin1|166633|e_gw1.45.106.1|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSback to top mRNA from alignment at Contig_45:234995..235807- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:234995..235807- >mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )back to top |