mRNA_6061 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166633
Unique NamemRNA_6061
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 1.460e-144
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1
Query:    1 MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL 810
            MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL
Sbjct:    1 MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTTLL 270          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.430e-81
Identity = 188/263 (71.48%), Postives = 216/263 (82.13%), Query Frame = 1
Query:   22 SPRGGVGGRPV-DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQ----HVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAISMSPA 795
            S RGG   +PV DKRRLERNAREQ+RSLKISQ+IDELR LLRQSG+ VK+SKS++LQE T LI  L R+Q  LE ER H+L LVQ LS   + Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         ASVGMDYQLIFHNAAIPLAV S+NGNIV+CN+RMC  TG+RR+ELL LTVFNLVADA+LQ+SFALISG L+   AA A  Q    HVD+PCK+RDG+PGGVLS++LVRD+++RPRFFAIS++PA
Sbjct:   56 SHRGGP--KPVVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------ASVGMDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQPGGVLSIALVRDELLRPRFFAISLAPA 307          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.320e-24
Identity = 102/364 (28.02%), Postives = 142/364 (39.01%), Query Frame = 1
Query:   55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSA----------------------------------------GGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------ASVG--------------------------------------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGG-VLSVSLVRDDIMRPRFFAISMSPAPTT 804
            +KRRLERNAREQKRSLKISQRI++LR +L Q G+ VK SKS VL E T+ I  L RQ    EAERA +L L+    A                                        GG  +G                                                                               A+ G                                      ++Y+ +F    +P+A+ ++NGN+V+CN+R+   TGFR++E L +T+F+LVAD +LQ +F++IS  LS     G PP    +P K+ +G PGG V+ +S V DD +RP  F I +  +P T
Sbjct:  269 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPP-FFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPAT 631          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.450e-17
Identity = 80/255 (31.37%), Postives = 117/255 (45.88%), Query Frame = 1
Query:   22 SPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQ--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRDDIMRPRFFAI 780
            S  GG    P DKRRL+RNAREQ+RS KI+ +ID+LR +LR +G  VK++KS VL E  + I+ L +++ ALEA               GNT   G                                                  Y+L F +  IP+A+ +++G  V+ N R    T + + ELL LT+FNL A   LQ +F+ +S  L +   A            ++     G L++SLVRDD+ RP +F++
Sbjct:  450 SKAGGKESAP-DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEAA--------------GNTSYPGMGAAADDGWGGQPRRMDQDTWASQPGGFGSGNVASAAVSQATGRLVSEHSYRLAFFDGCIPMAIATMDGCFVDGNKRFVEVTSYSKAELLKLTIFNLTAPHDLQDTFSRVSQMLRSTEDA----PRFSTGAVMKHNIERGYLAISLVRDDLRRPIYFSV 685          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S1UNB1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNB1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-14
Identity = 78/279 (27.96%), Postives = 123/279 (44.09%), Query Frame = 1
Query:   40 GGRPVDK--------RRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGG------------NTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVR---DGRPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
            GGRP  K        +R ERNARE++RS +IS++I+ELR LL   G+ V K +KS VL E  N I++L + Q   E +R  ++  +QM+  G               Q                                                  +Y+ IF++ ++ +AV S+ G  ++CN   C  + + + E+  LT+FNL +   LQ +F LIS  +S PA  G     V  PC +R   + R    LSV+L++ D    + F +++   P +
Sbjct:  212 GGRPKKKQKKVLDESKREERNAREKERSFRISKQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRQQLVQQIQMIGGGALGPQAAQTIRHVAAQNGVWSLGNFGGVPPKSAMQFYPDAAAPAATETTPPPGAPDAPLQTKIDDPEYRFIFNSCSVGMAVASMGGAFIDCNELFCQLSNYTKQEVCSLTIFNLTSRQDLQPAFDLISEMISPPAD-GNGSVAVAKPCVLRGSMNNRDDIGLSVALIKGDDGIAKCFCVTLIHNPAS 489          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S0XM67_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XM67_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-14
Identity = 75/261 (28.74%), Postives = 118/261 (45.21%), Query Frame = 1
Query:   61 RRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAG--GNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM-------DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDG---RPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
            +R ERNARE++RS +IS++I+ELR LL   G+ V K +KS VL E  N I++L + Q   E +R  ++  VQ + +G  G                                                +S  M       DY+ +F++  I +A+ S+ G  ++CN   C  + + + ++  +TVFNL A   LQ +F LIS  LSAP      P   +  C +R     RP   LSV L++      + F +++   PT+
Sbjct:  253 KREERNAREKERSFRISKQINELRALLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQVQHIGSGALGPQAAQAVRHVAAKNGVWSLGNFGGVPPKSAMSTIYHPNRAAAPDDAQSSSSSMSNNIEDSDYRHVFNSCTIGMAIASMGGAFIDCNKFFCQISDYTKQQICSMTVFNLTARQDLQSAFDLISQMLSAPL----DPTVTNTSCVLRGALRHRPDVGLSVKLIKGIDGVAKCFCVTLIQNPTS 509          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S4ABX4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABX4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.630e-14
Identity = 77/282 (27.30%), Postives = 120/282 (42.55%), Query Frame = 1
Query:   16 CTSPRGGVGGRPV--DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQ-------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDG---RPGGVLSVSLVRDDIMRPRFFAISMSPAPTT 804
            C S  GG   +    D +R ERNARE++RS +IS++I+ELR LL   G+ V K +KS VL E  N I++L +     E +R  ++  VQ + +G   Q             G                                                 DY  +F++  I +A+ S+ G  ++CN+  C    + + E+  +TVFNL A + LQ +F LIS  LSAP      P   +  C +R     R    LSV L++ +    + F +++   P +
Sbjct:  295 CGSSEGGTNKKKKLDDSKREERNAREKERSFRISKQINELRSLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHHYRSEIDRHQLVQQVQRIGSGALGQQAAQAVRHAAAQNGVWSLGNFGGVPPKSAMMYHQPSGAGAPVADETQSSASNNGTLPNTIEESDYIHVFNSCTIGMAIASMGGAFIDCNNVFCQIANYTKQEICSMTVFNLTARSDLQPAFDLISQMLSAPL----DPNVTNTSCVLRGALKHRTDVGLSVKLIKGNDGVAKCFCVTLINNPAS 572          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A7S3KX76_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX76_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.260e-13
Identity = 58/206 (28.16%), Postives = 96/206 (46.60%), Query Frame = 1
Query:   55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVG-------MDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALS 648
            +++R+ERNARE++RS +IS++I+ELR LL   G+ V K +KS VL E  N I++L + Q   E +R  ++  +Q++  G +                                               A           DY+ IF++  + +A+ S+ G  ++CN   C  + + + E+  LT+FNL A   LQ +F LIS  +S
Sbjct:  233 ERKRVERNAREKERSFRISKQINELRGLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLIQQMQLIGGGAHGAQAAQAIRHVAAQNGVWSLGNFGGIPPKSALLTPNTEKSNNTVTEDAVATDPNKVNTNDYRFIFNSCGVGMAIASMGGAFIDCNQLFCQLSNYTKQEVCSLTIFNLTARQDLQHAFDLISQLIS 438          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: K0SGS0_THAOC (BHLH domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGS0_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 9.720e-13
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   67 LERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALIS 636
            +ERNARE++RS KI+++IDELR LL + G++V K +K  VL E  N I LL +QQ   E +R  ++  +Q + A  N Q                                                  DY+ IF ++ + +A+ ++ G  V+CNS     + + ++E+ ++T+FN+ + A LQ +F LIS
Sbjct:    1 MERNAREKERSCKIARQIDELRALLSRGGVTVTKGTKITVLAEAANYINLLQQQQVQWEMDRQSLVQQMQQMQA--NAQSAIQGQTGRAITGRTNPLNPTPNPLLPSSSASAISPD-------------DYKHIFESSTVGMAIATLGGAFVDCNSIFSQLSEYTKEEVAVMTIFNMTSRADLQHAFDLIS 176          
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Match: A0A1E7F364_9STRA (BHLH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F364_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.370e-12
Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 1
Query:   55 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISV-KNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGM---------------DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAP 654
            + +R ERNARE++RS +IS++I+ELR LL   G+ V K +KS VL E  N I++L + Q   E +R  ++  VQ + +G   Q                                             ++                  DY+ +F++  I +A+ S+ G  ++CN   C  + + + E+  +TVFNL +   LQ +F LIS  LSAP
Sbjct:   30 ESKREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSSVLTEAANYIRMLQQHQYRSEIDRHQLVQQVQRIGSGALGQEAASAVRHVAAQNGVWSLGNFGGVPPKSAMMYHQPSGPIADEPTSSADSASSLNGSTLPSKIEESDYRQVFNSCTIGMAIASMGGAFIDCNKLFCNISNYTKQEICSMTVFNLTSRQDLQSAFDLISQMLSAP 245          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166633 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRU1_9STRA1.460e-144100.00BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z815_9STRA1.430e-8171.48BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
D8LJ51_ECTSI2.320e-2428.02N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A7S2CTA7_9STRA2.450e-1731.37Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S1UNB1_9STRA1.170e-1427.96Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0XM67_9STRA1.180e-1428.74Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S4ABX4_9STRA5.630e-1427.30Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3KX76_9STRA4.260e-1328.16Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K0SGS0_THAOC9.720e-1329.84BHLH domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A1E7F364_9STRA1.370e-1228.24BHLH domain-containing protein n=1 Tax=Fragilariop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:234995..235807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166633|e_gw1.45.106.1
Descriptionhelix loop helix domain
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2C415@1|root,2T5J0@2759|Eukaryota,2XF85@2836|Bacillariophyta
Evalue1.15e-13
Seed ortholog35128.Thaps20899
Hectar predicted targeting categoryother localisation
TranscriptId166955
TrackFilteredModels1
ProteinId166633
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166633gene_6061Tribonema minus UTEX_B_3156 geneContig_45 234995..235807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6061_1exon_6061_1Tribonema minus UTEX_B_3156 exonContig_45 234995..235807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6061CDS_6061Tribonema minus UTEX_B_3156 CDSContig_45 234995..235807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166633Trimin1|166633|e_gw1.45.106.1Tribonema minus UTEX_B_3156 polypeptideContig_45 234995..235807 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACTTGCCTTGTACCAGCCCGAGGGGAGGGGTAGGGGGCAGACC
GGTCGACAAGCGGCGGCTGGAGAGGAACGCGCGGGAGCAGAAGCGGTCTC
TCAAGATCTCTCAGAGGATCGACGAGCTGAGGCTGCTGCTGCGGCAGAGC
GGCATCTCAGTCAAGAACAGCAAGTCCCATGTGCTGCAGGAGGGCACCAA
CCTCATCAAGCTGCTTCTGCGGCAGCAGGGGGCGCTGGAGGCGGAGCGCG
CGCACATGCTCGGCCTCGTGCAGATGCTGTCGGCCGGCGGCAACACGCAG
GGCGGCGCGCGCGGCGGCGGCGGTGGCGGCGGCGCTGACTCTCAGGCGCA
GATGCAGCAGGCGGCGGCGGCGGCGGCGCAGGAGAAGGCGACCGCGGCCG
CGACGGCGGCAGCGGCGGCGGCGTCGGCGGCGGCGGCGTCCGTCGGCATG
GACTACCAGCTCATCTTCCACAACGCCGCGATACCGCTGGCGGTGTGCTC
CATCAACGGCAACATCGTGGAGTGCAACTCGCGCATGTGCGTCGCGACGG
GCTTCCGCCGCGACGAGCTGCTGCTGCTCACCGTCTTCAACCTCGTCGCG
GACGCGTACCTGCAGCGGTCGTTCGCGCTCATCAGCGGCGCGCTCAGCGC
GCCCGCCGCCGCCGGCGCGCCGCCGCAGCACGTCGACCTGCCGTGCAAGG
TGCGCGACGGGCGGCCCGGCGGCGTGCTCAGCGTGTCGCTCGTGCGCGAC
GACATCATGCGCCCGCGCTTCTTCGCCATCAGCATGAGCCCAGCGCCGAC
GACGCTGCTGTAG
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protein sequence of jgi.p|Trimin1|166633

>Trimin1|166633|e_gw1.45.106.1 ID=Trimin1|166633|e_gw1.45.106.1|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
MAHLPCTSPRGGVGGRPVDKRRLERNAREQKRSLKISQRIDELRLLLRQS
GISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQ
GGARGGGGGGGADSQAQMQQAAAAAAQEKATAAATAAAAAASAAAASVGM
DYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVA
DAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRPGGVLSVSLVRD
DIMRPRFFAISMSPAPTTLL*
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mRNA from alignment at Contig_45:234995..235807-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )
ATGGCGCACTTGCCTTGTACCAGCCCGAGGGGAGGGGTAGGGGGCAGACC GGTCGACAAGCGGCGGCTGGAGAGGAACGCGCGGGAGCAGAAGCGGTCTC TCAAGATCTCTCAGAGGATCGACGAGCTGAGGCTGCTGCTGCGGCAGAGC GGCATCTCAGTCAAGAACAGCAAGTCCCATGTGCTGCAGGAGGGCACCAA CCTCATCAAGCTGCTTCTGCGGCAGCAGGGGGCGCTGGAGGCGGAGCGCG CGCACATGCTCGGCCTCGTGCAGATGCTGTCGGCCGGCGGCAACACGCAG GGCGGCGCGCGCGGCGGCGGCGGTGGCGGCGGCGCTGACTCTCAGGCGCA GATGCAGCAGGCGGCGGCGGCGGCGGCGCAGGAGAAGGCGACCGCGGCCG CGACGGCGGCAGCGGCGGCGGCGTCGGCGGCGGCGGCGTCCGTCGGCATG GACTACCAGCTCATCTTCCACAACGCCGCGATACCGCTGGCGGTGTGCTC CATCAACGGCAACATCGTGGAGTGCAACTCGCGCATGTGCGTCGCGACGG GCTTCCGCCGCGACGAGCTGCTGCTGCTCACCGTCTTCAACCTCGTCGCG GACGCGTACCTGCAGCGGTCGTTCGCGCTCATCAGCGGCGCGCTCAGCGC GCCCGCCGCCGCCGGCGCGCCGCCGCAGCACGTCGACCTGCCGTGCAAGG TGCGCGACGGGCGGCCCGGCGGCGTGCTCAGCGTGTCGCTCGTGCGCGAC GACATCATGCGCCCGCGCTTCTTCGCCATCAGCATGAGCCCAGCGCCGAC GACGCTGCTGTAG
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Coding sequence (CDS) from alignment at Contig_45:234995..235807-

>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Trimin1|166633|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_45:234995..235807- (Tribonema minus UTEX_B_3156 )
ATGGCGCACTTGCCTTGTACCAGCCCGAGGGGAGGGGTAGGGGGCAGACC
GGTCGACAAGCGGCGGCTGGAGAGGAACGCGCGGGAGCAGAAGCGGTCTC
TCAAGATCTCTCAGAGGATCGACGAGCTGAGGCTGCTGCTGCGGCAGAGC
GGCATCTCAGTCAAGAACAGCAAGTCCCATGTGCTGCAGGAGGGCACCAA
CCTCATCAAGCTGCTTCTGCGGCAGCAGGGGGCGCTGGAGGCGGAGCGCG
CGCACATGCTCGGCCTCGTGCAGATGCTGTCGGCCGGCGGCAACACGCAG
GGCGGCGCGCGCGGCGGCGGCGGTGGCGGCGGCGCTGACTCTCAGGCGCA
GATGCAGCAGGCGGCGGCGGCGGCGGCGCAGGAGAAGGCGACCGCGGCCG
CGACGGCGGCAGCGGCGGCGGCGTCGGCGGCGGCGGCGTCCGTCGGCATG
GACTACCAGCTCATCTTCCACAACGCCGCGATACCGCTGGCGGTGTGCTC
CATCAACGGCAACATCGTGGAGTGCAACTCGCGCATGTGCGTCGCGACGG
GCTTCCGCCGCGACGAGCTGCTGCTGCTCACCGTCTTCAACCTCGTCGCG
GACGCGTACCTGCAGCGGTCGTTCGCGCTCATCAGCGGCGCGCTCAGCGC
GCCCGCCGCCGCCGGCGCGCCGCCGCAGCACGTCGACCTGCCGTGCAAGG
TGCGCGACGGGCGGCCCGGCGGCGTGCTCAGCGTGTCGCTCGTGCGCGAC
GACATCATGCGCCCGCGCTTCTTCGCCATCAGCATGAGCCCAGCGCCGAC
GACGCTGCTGTAG
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