mRNA_6020 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|59467
Unique NamemRNA_6020
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|59467 vs. uniprot
Match: A0A835YVJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ4_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.600e-105
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 3 
Query:  246 MMRRLSELAAAARAPVQEAARLRAGGATPAQVEECVDDLQHGWRESWRCVRKPRTCWRPPAPHWCGGSXXXXXXXXXXXXXXEVDGGGTHPWGESNMVPRLRADTVAAAQTIMQRAARVQLHNHSLCCCCVGSMDACGGGRTPTRCQGTGTASRGAAEVIAAARPRQR 749
            MMRRLSELAAAARAPVQEAARLRAGGATPAQVEECVDDLQHGWRESWRCVRKPRTCWRPPAPHWCGGSXXXXXXXXXXXXXXEVDGGGTHPWGESNMVPRLRADTVAAAQTIMQRAARVQLHNHSLCCCCVGSMDACGGGRTPTRCQGTGTASRGAAEVIAAARPRQR
Sbjct:    1 MMRRLSELAAAARAPVQEAARLRAGGATPAQVEECVDDLQHGWRESWRCVRKPRTCWRPPAPHWCGGSXXXXXXXXXXXXXXEVDGGGTHPWGESNMVPRLRADTVAAAQTIMQRAARVQLHNHSLCCCCVGSMDACGGGRTPTRCQGTGTASRGAAEVIAAARPRQR 168
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|59467 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YVJ4_9STRA1.600e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:1012674..1013892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|59467|CE59466_43
Hectar predicted targeting categoryother localisation
TranscriptId59789
TrackFilteredModels1
ProteinId59467
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|59467gene_6020Tribonema minus UTEX_B_3156 geneContig_33 1012674..1013892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6020_2exon_6020_2Tribonema minus UTEX_B_3156 exonContig_33 1012674..1013393 -
exon_6020_1exon_6020_1Tribonema minus UTEX_B_3156 exonContig_33 1013776..1013892 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6020UTR3_6020Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 1012674..1012758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6020CDS_6020Tribonema minus UTEX_B_3156 CDSContig_33 1012759..1013265 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6020UTR5_6020Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 1013776..1013892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|59467Trimin1|59467|CE59466_43Tribonema minus UTEX_B_3156 polypeptideContig_33 1012759..1013265 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Trimin1|59467|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=837bp|location=Sequence derived from alignment at Contig_33:1012674..1013892- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCAACGCTGCATTCCCAGTGTACATGCTCCGGTCAGCAATGGCTCAGCC
TTGGCTCTCTTCTACTGGCGTCCGCCTGGCTCTGCTTGCAGCTTACAGCA
ACAGGGCGCTCTTCATGGCCCCAGCGGTGGTGGCAGCCACGGCAGGTGCA
CTAGCTGTGGCTGCACAGCAGGCAGGCCTCGCCGATCAGCTTGGGGCTGG
CGGGCGTGCGATATCATGGACCGCTTGCACAAGCGTTGAGGCACCATGAT
GAGGCGGCTCAGTGAGCTGGCTGCTGCAGCACGCGCACCTGTACAGGAGG
CGGCTCGACTGCGCGCAGGCGGTGCCACACCTGCTCAAGTGGAGGAGTGT
GTGGACGACCTGCAGCACGGCTGGCGCGAAAGCTGGCGGTGTGTGCGCAA
GCCCAGAACATGTTGGCGCCCACCTGCGCCTCACTGGTGTGGCGGCAGTG
GCGGTGGCGGCGGCGGAAGCAGCGACAGTGGCGGAGGCGGCGAAGTTGAC
GGCGGCGGCACGCATCCATGGGGGGAATCCAATATGGTACCGCGTCTGCG
CGCAGACACGGTTGCGGCGGCGCAAACAATCATGCAGCGGGCGGCGCGGG
TGCAATTGCATAATCATTCATTATGCTGCTGCTGCGTTGGCAGCATGGAC
GCATGTGGAGGAGGTCGGACTCCGACGAGATGCCAAGGTACGGGTACAGC
TAGTCGGGGTGCCGCTGAGGTGATTGCGGCAGCACGTCCGCGTCAGCGCT
AGGCGGCGTGGCTGTGCCATCTGACCGTTGCAGCGCGCACACTCATGCAG
CATGTGAGCCGTCTGCGCGTTCAGCAGCCACTACTGC
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protein sequence of jgi.p|Trimin1|59467

>Trimin1|59467|CE59466_43 ID=Trimin1|59467|CE59466_43|Name=jgi.p|Trimin1|59467|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MMRRLSELAAAARAPVQEAARLRAGGATPAQVEECVDDLQHGWRESWRCV
RKPRTCWRPPAPHWCGGSGGGGGGSSDSGGGGEVDGGGTHPWGESNMVPR
LRADTVAAAQTIMQRAARVQLHNHSLCCCCVGSMDACGGGRTPTRCQGTG
TASRGAAEVIAAARPRQR*
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mRNA from alignment at Contig_33:1012674..1013892-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Trimin1|59467|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1219bp|location=Sequence derived from alignment at Contig_33:1012674..1013892- (Tribonema minus UTEX_B_3156 )
GCCAACGCTGCATTCCCAGTGTACATGCTCCGGTCAGCAATGGCTCAGCC
TTGGCTCTCTTCTACTGGCGTCCGCCTGGCTCTGCTTGCAGCTTACAGCA
ACAGGGCGCTCTTCATGGTAAGCTGCTGCACGATGCCTGTTGCTTACAAA
CAATCCCTGATTGTGCTTAGCATGCCCTCTCCTGTGTAGCACCTGTGCCT
GTTGCTGTGTCTCTGGCTGTACAGTGTTGTTGACTACTGTCTGAGGGCTC
TTTCTTCATTCTGAAAGCTGAATACAACACCCTGTTGAGGCGTTGCAGCT
GCTATATACACCATCACGGTGGGATGCTGTCTGTATTTCAAGGCCTCTCT
GCCTCTCGGGGCATTTCTACCCTAAGGCTTAAATGATATAACCTCAGTAC
TGTTGATAGGCATGAATTACCCAATCAGCTCTCAAGTGCTCTTCGCCTTT
TGTATGCATATTGTGCTCATGTGTGCTTTGCATGGTTCACTGATCGCAGG
CCCCAGCGGTGGTGGCAGCCACGGCAGGTGCACTAGCTGTGGCTGCACAG
CAGGCAGGCCTCGCCGATCAGCTTGGGGCTGGCGGGCGTGCGATATCATG
GACCGCTTGCACAAGCGTTGAGGCACCATGATGAGGCGGCTCAGTGAGCT
GGCTGCTGCAGCACGCGCACCTGTACAGGAGGCGGCTCGACTGCGCGCAG
GCGGTGCCACACCTGCTCAAGTGGAGGAGTGTGTGGACGACCTGCAGCAC
GGCTGGCGCGAAAGCTGGCGGTGTGTGCGCAAGCCCAGAACATGTTGGCG
CCCACCTGCGCCTCACTGGTGTGGCGGCAGTGGCGGTGGCGGCGGCGGAA
GCAGCGACAGTGGCGGAGGCGGCGAAGTTGACGGCGGCGGCACGCATCCA
TGGGGGGAATCCAATATGGTACCGCGTCTGCGCGCAGACACGGTTGCGGC
GGCGCAAACAATCATGCAGCGGGCGGCGCGGGTGCAATTGCATAATCATT
CATTATGCTGCTGCTGCGTTGGCAGCATGGACGCATGTGGAGGAGGTCGG
ACTCCGACGAGATGCCAAGGTACGGGTACAGCTAGTCGGGGTGCCGCTGA
GGTGATTGCGGCAGCACGTCCGCGTCAGCGCTAGGCGGCGTGGCTGTGCC
ATCTGACCGTTGCAGCGCGCACACTCATGCAGCATGTGAGCCGTCTGCGC
GTTCAGCAGCCACTACTGC
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Coding sequence (CDS) from alignment at Contig_33:1012674..1013892-

>mRNA_6020 ID=mRNA_6020|Name=jgi.p|Trimin1|59467|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_33:1012674..1013892- (Tribonema minus UTEX_B_3156 )
ATGATGAGGCGGCTCAGTGAGCTGGCTGCTGCAGCACGCGCACCTGTACA
GGAGGCGGCTCGACTGCGCGCAGGCGGTGCCACACCTGCTCAAGTGGAGG
AGTGTGTGGACGACCTGCAGCACGGCTGGCGCGAAAGCTGGCGGTGTGTG
CGCAAGCCCAGAACATGTTGGCGCCCACCTGCGCCTCACTGGTGTGGCGG
CAGTGGCGGTGGCGGCGGCGGAAGCAGCGACAGTGGCGGAGGCGGCGAAG
TTGACGGCGGCGGCACGCATCCATGGGGGGAATCCAATATGGTACCGCGT
CTGCGCGCAGACACGGTTGCGGCGGCGCAAACAATCATGCAGCGGGCGGC
GCGGGTGCAATTGCATAATCATTCATTATGCTGCTGCTGCGTTGGCAGCA
TGGACGCATGTGGAGGAGGTCGGACTCCGACGAGATGCCAAGGTACGGGT
ACAGCTAGTCGGGGTGCCGCTGAGGTGATTGCGGCAGCACGTCCGCGTCA
GCGCTAG
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