mRNA_6016 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348982
Unique NamemRNA_6016
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A836CE16_9STRA (Rab11A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE16_9STRA)

HSP 1 Score: 429 bits (1103), Expect = 6.480e-150
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:   94 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT 756
            MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT
Sbjct:    1 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGCRT 221
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: H6WB88_VAULI (Rab11 family GTPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB88_VAULI)

HSP 1 Score: 359 bits (922), Expect = 1.340e-121
Identity = 187/221 (84.62%), Postives = 200/221 (90.50%), Query Frame = 1 
Query:   88 SNMAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSGC 750
            S+M  KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN+ESKSTIGVEFATKSIQTENK+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH TFEN ERWLKELRDHAE+NIVVMLVGNKCDLRHLRTVSVEEA EFAEKN LAFIETSALD+SGVDTAFQ+ILTEIY+LMNKKQMS  G++    +GQGE IAL+SG    +G  S  ACSGC
Sbjct:   53 SDMGAKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNMESKSTIGVEFATKSIQTENKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKHSTFENAERWLKELRDHAESNIVVMLVGNKCDLRHLRTVSVEEAKEFAEKNSLAFIETSALDSSGVDTAFQQILTEIYKLMNKKQMSGNGNNSLN-IGQGERIALNSGGDKASGDGS--ACSGC 270
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: D8LQC1_ECTSI (Rab11A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC1_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 2.150e-117
Identity = 181/218 (83.03%), Postives = 201/218 (92.20%), Query Frame = 1 
Query:   94 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSG 747
            MAGK++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TFENVERWLKELRDHAEANIVVML+GNK DLRHLRTV+ EEA EFA+K+ LAF+ETSALDASGVD+AFQRILTEIYRLM++K ++A  ++  P L +GETIALSS A D A +RSK++C+G
Sbjct:    1 MAGKEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLIGNKSDLRHLRTVTHEEAMEFAKKHNLAFLETSALDASGVDSAFQRILTEIYRLMSRKTIAAN-TATGPDLSRGETIALSS-ARDDASNRSKSSCAG 216
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A7S2V252_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V252_9STRA)

HSP 1 Score: 345 bits (884), Expect = 1.200e-116
Identity = 179/216 (82.87%), Postives = 194/216 (89.81%), Query Frame = 1 
Query:   94 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTAC 741
            MAGKD+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR VS EEA  FAEKN LAFIETSALDASGVDTAFQRILTEIYRLM+++ + AGG+     + +GETI+L++   D + S SK+ C
Sbjct:    2 MAGKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHVTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVSTEEAMAFAEKNNLAFIETSALDASGVDTAFQRILTEIYRLMSRRSVLAGGNDAV--ISRGETISLAATQGDGSRSSSKSNC 215
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: B5YND5_THAPS (Rab-type small GTPase n=3 Tax=Thalassiosira TaxID=35127 RepID=B5YND5_THAPS)

HSP 1 Score: 325 bits (834), Expect = 4.240e-109
Identity = 166/196 (84.69%), Postives = 177/196 (90.31%), Query Frame = 1 
Query:  106 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIAL 693
            DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTE K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ M+A   +  P L  G+TI+L
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMAAEDGANAPQLSSGQTISL 201
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A7S0C1Y2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1Y2_9STRA)

HSP 1 Score: 321 bits (823), Expect = 5.610e-107
Identity = 167/211 (79.15%), Postives = 183/211 (86.73%), Query Frame = 1 
Query:   82 LCSNMAG-KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATD 711
            L   M+G +DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ + A  ++    LG G+ I L+  +T+
Sbjct:   26 LIFKMSGPRDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHSTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNIQAEEAANATTLGDGQKINLNDTSTN 236
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A6V0CK96_9STRA (Hypothetical protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=A0A6V0CK96_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.790e-106
Identity = 168/216 (77.78%), Postives = 185/216 (85.65%), Query Frame = 1 
Query:   97 AGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAG-GSSPTPALGQGETIALSSGATDKAGSRSKTAC 741
            A  DEEYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ ++A   ++  P+L  G++I+L  G  + AG   K  C
Sbjct:    3 ARVDEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNVAAEEANAGGPSLTAGQSISLGGG-NNNAGQGEKKGC 217
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: B7GDZ3_PHATC (Predicted protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7GDZ3_PHATC)

HSP 1 Score: 317 bits (811), Expect = 1.270e-105
Identity = 165/205 (80.49%), Postives = 177/205 (86.34%), Query Frame = 1 
Query:  106 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAG 720
            DEEYDYLFK+VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQ E K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH TFENVERWLKELRDHAEANIVVMLVGNK DLRHLR V  +EA  F+E++ LAFIETSALDASGVDTAFQRILTEIYRLM+++ M A  ++  P +  G  I+LS     K G
Sbjct:    6 DEEYDYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHLRAVETDEAMAFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMSRRNMQAEENANAP-MSAGHKISLSQSGDKKKG 209
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A2R5G9J5_9STRA (Ras-related protein Rab-11A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9J5_9STRA)

HSP 1 Score: 315 bits (807), Expect = 5.150e-105
Identity = 157/199 (78.89%), Postives = 178/199 (89.45%), Query Frame = 1 
Query:   94 MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIA 690
            M  +++EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF+L+SKSTIGVEFATKSI+T+ K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH+TF+NVERWLKELRDHA++NIV+MLVGNK DLRHLR VS EEA  +AE N +AFIETSALD+SGVDTAFQRILTEIY+ M++K M  GG+    ++ QGE IA
Sbjct:    1 MLKQEDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLDSKSTIGVEFATKSIKTDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHLTFDNVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVSTEEAMAYAESNGIAFIETSALDSSGVDTAFQRILTEIYQKMSRKSMVGGGADADASITQGEPIA 199
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: L1J5D4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J5D4_GUITC)

HSP 1 Score: 313 bits (801), Expect = 4.820e-104
Identity = 158/215 (73.49%), Postives = 185/215 (86.05%), Query Frame = 1 
Query:  103 KDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFENVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAFIETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIALSSGATDKAGSRSKTACSG 747
            KD+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT+SIQ + K IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+KH+TFENV+RWLKELRDHA+ NIV+MLVGNK DLRHLR V+ ++A  +AE+  L+FIETSALD++ V+ AFQ ILTEIYRL++++ M AG S  +P++GQGE + +S     KA  R K+ CSG
Sbjct:    3 KDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTFENVDRWLKELRDHADHNIVIMLVGNKSDLRHLRAVATDDARGYAEQRNLSFIETSALDSTNVEQAFQTILTEIYRLVSRRPMEAGESGDSPSVGQGEKVIVSREDETKAAER-KSKCSG 216
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A835Z0K3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K3_9STRA)

HSP 1 Score: 469 bits (1207), Expect = 5.280e-167
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 
Query:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 723
            MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR
Sbjct:    1 MSSPSQSDEELLQPTAAELVSKKGHRRKLLAAAAGLAVCLTLGAYQFLFEENIADGILLEPPDRLAEAGSLSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIPRMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPSCEGFDGVTDR 241
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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Match: A0A835YGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX0_9STRA)

HSP 1 Score: 226 bits (577), Expect = 6.030e-69
Identity = 113/162 (69.75%), Postives = 138/162 (85.19%), Query Frame = 1 
Query:  211 LSARLRSFAATSFSLRRFVLEVNAPMDVFVYGTYIAGVPQDEENVELLRGLATAFVLEPFVEIP-RMMWQWQSIRNSLDMATAYADARGSPYAAVVRSRPDTVYLTPLHLDALLSKYLDLGLYRPYFAAQGFKSDAELNLTAEVSQPVLAVSKVALPAFFPS 693
            LS  LRSFAA+SFSLR F+L+VNAP+DVFVYG+Y AGVPQDEEN+ELLRG+ATAFVLEPF  IP RM+WQW +IRN+L+MATAYADARG PY A+VR+RPDTVYLTPLHLD LLS+  ++ L+RPYF A  +KS+AELN +A++ +PVL+ +    PAFFPS
Sbjct:  103 LSGGLRSFAASSFSLRAFILDVNAPIDVFVYGSYDAGVPQDEENLELLRGVATAFVLEPFRFIPTRMIWQWSAIRNALEMATAYADARGRPYDAIVRARPDTVYLTPLHLDTLLSRDREVELHRPYFRAHAWKSNAELNASADIPRPVLSTA----PAFFPS 260
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348982 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE16_9STRA6.480e-150100.00Rab11A, rab family GTPase n=1 Tax=Tribonema minus ... [more]
H6WB88_VAULI1.340e-12184.62Rab11 family GTPase n=1 Tax=Vaucheria litorea TaxI... [more]
D8LQC1_ECTSI2.150e-11783.03Rab11A, RAB family GTPase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2V252_9STRA1.200e-11682.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B5YND5_THAPS4.240e-10984.69Rab-type small GTPase n=3 Tax=Thalassiosira TaxID=... [more]
A0A7S0C1Y2_9STRA5.610e-10779.15Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6V0CK96_9STRA1.790e-10677.78Hypothetical protein n=8 Tax=Bacillariophyta TaxID... [more]
B7GDZ3_PHATC1.270e-10580.49Predicted protein n=5 Tax=Bacillariophyta TaxID=28... [more]
A0A2R5G9J5_9STRA5.150e-10578.89Ras-related protein Rab-11A n=1 Tax=Hondaea fermen... [more]
L1J5D4_GUITC4.820e-10473.49Uncharacterized protein n=2 Tax=Guillardia theta T... [more]

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BLAST of jgi.p|Trimin1|348982 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z0K3_9STRA5.280e-167100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGX0_9STRA6.030e-6969.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:987460..994037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348982|estExt_Genemark1.C_Ctg_330129
BRITEko00000,ko00001,ko04031,ko04131,ko04147
KEGG Pathwayko04144,ko04152,ko04961,ko04962,ko04972,map04144,map04152,map04961,map04962,map04972
KEGG koko:K07904,ko:K07905
DescriptionGTPase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1100@1|root,KOG0087@2759|Eukaryota
Evalue1.46e-119
Seed ortholog2880.D8LQC1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab11A, RAB family GTPase
Ec32 orthologEc-10_005080.1
TranscriptId349304
TrackFilteredModels1
ProteinId348982
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348982gene_6016Tribonema minus UTEX_B_3156 geneContig_33 987460..994037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348982Trimin1|348982|estExt_Genemark1.C_Ctg_330129Tribonema minus UTEX_B_3156 polypeptideContig_33 987702..993944 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6016_7exon_6016_7Tribonema minus UTEX_B_3156 exonContig_33 987460..987785 -
exon_6016_6exon_6016_6Tribonema minus UTEX_B_3156 exonContig_33 988870..989031 -
exon_6016_5exon_6016_5Tribonema minus UTEX_B_3156 exonContig_33 990298..990396 -
exon_6016_4exon_6016_4Tribonema minus UTEX_B_3156 exonContig_33 992005..992163 -
exon_6016_3exon_6016_3Tribonema minus UTEX_B_3156 exonContig_33 993404..993525 -
exon_6016_2exon_6016_2Tribonema minus UTEX_B_3156 exonContig_33 993669..993687 -
exon_6016_1exon_6016_1Tribonema minus UTEX_B_3156 exonContig_33 993924..994037 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6016UTR3_6016Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 987460..987701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6016CDS_6016Tribonema minus UTEX_B_3156 CDSContig_33 993924..993944 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6016UTR5_6016Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 993945..994037 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6016 ID=mRNA_6016|Name=jgi.p|Trimin1|348982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1001bp|location=Sequence derived from alignment at Contig_33:987460..994037- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGAGAGAGTGTGTGCAGCAGTCGAAGCCAGAGCAATATCTGAGACGTTC
TTAACAGTTTTGTTGCGATCACCGGTGGCGACTCTGCAGCAATATGGCGG
GCAAGGACGAAGAGTACGATTATCTGTTCAAAGTTGTGCTGATTGGGGAC
TCTGGCGTGGGCAAATCAAATCTGCTGAGCCGGTTCACACGGAATGAGTT
CAACTTGGAGAGCAAGAGCACAATCGGAGTGGAGTTTGCCACAAAGTCTA
TACAGACGGAGAACAAGGTGATAAAGGCGCAGATCTGGGACACGGCGGGG
CAGGAGCGGTACCGGGCGATCACGAGCGCGTACTACCGCGGCGCGGTGGG
CGCGCTGCTGGTGTACGACATCTCTAAGCACATCACGTTCGAGAACGTGG
AGCGCTGGCTTAAGGAACTGCGGGATCACGCGGAGGCAAACATAGTGGTC
ATGCTGGTGGGCAACAAGTGCGACTTGAGGCACCTGCGCACCGTGTCGGT
GGAGGAGGCCACGGAATTTGCGGAGAAGAACAAGCTGGCGTTCATAGAGA
CGTCAGCGCTCGACGCGTCCGGCGTCGACACGGCGTTCCAGCGCATCCTC
ACCGAAATCTACCGGCTCATGAACAAGAAGCAGATGAGCGCGGGGGGCTC
GTCCCCCACACCAGCGCTCGGCCAGGGGGAGACCATTGCTCTATCAAGCG
GCGCGACAGACAAGGCGGGATCGCGAAGCAAGACGGCGTGCAGCGGGTGC
AGGACGTAAGCTGGGGCCAGCGCGCAGTAGGTTGTGTTGTCATGGGGGGG
GAGGGAGTGGAGTGGAGTGGAGTGGGGCAGAACAGTGTAAATGAGGCCAT
GCAGGGGGGCGCCAGGGGGTTGAAGACCCAGTTTGTGAACTGAGTTTCTG
CTGCGAGTTGGTGTATTGAAATTGCCGCTCCCGCGCTCGACATTATGCGT
GGTCAACAATTAAATGACTGCCATTGGAGCACGAGTTGGGTTGTTGCATC
C
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protein sequence of jgi.p|Trimin1|348982

>Trimin1|348982|estExt_Genemark1.C_Ctg_330129 ID=Trimin1|348982|estExt_Genemark1.C_Ctg_330129|Name=jgi.p|Trimin1|348982|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
MAGKDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
KSIQTENKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKHITFE
NVERWLKELRDHAEANIVVMLVGNKCDLRHLRTVSVEEATEFAEKNKLAF
IETSALDASGVDTAFQRILTEIYRLMNKKQMSAGGSSPTPALGQGETIAL
SSGATDKAGSRSKTACSGCRT*
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mRNA from alignment at Contig_33:987460..994037-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6016 ID=mRNA_6016|Name=jgi.p|Trimin1|348982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6578bp|location=Sequence derived from alignment at Contig_33:987460..994037- (Tribonema minus UTEX_B_3156 )
TGGAGAGAGTGTGTGCAGCAGTCGAAGCCAGAGCAATATCTGAGACGTTC
TTAACAGTTTTGTTGCGATCACCGGTGGCGACTCTGCAGCAATATGGCGG
GCAAGGACGAAGAGGTGTGTGTGACCCTGTGCCTGTTTTGTGAATTCGCA
ACAGCCTCTAACACGTGCCACCAGCGTAACAAGCGGTTGTCGTGACTGCC
ATGCTTCGCTTCCAAGTGCGACACGCACGCATTCCAGCTCATCGCCTGTG
CGCCTCAGGCTGACTTTTGCCGTCTTTTATCGCATCGCTCTTTCTCTCTT
TTGCGCTTGCTGCCCGGATTGCGCGTTCGCACTGGCGGTCTGGAGAGCAG
TACGATTATCTGTTCAAAGGTGAGACGACTGCTGATGTCAACCCCTGCCA
GCTGCATTGTGATTCACTTCCAGTGCCTCTGCTCATTGTTTTGGAGCGAG
AGCCGGCTCCCTTCCGTTTCACCCTGTAAAATGTGCTCTGTTGCCTCCCT
GCATTGACGCAGTTGTGCTGATTGGGGACTCTGGCGTGGGCAAATCAAAT
CTGCTGAGCCGGTTCACACGGAATGAGTTCAACTTGGAGAGCAAGAGCAC
AATCGGAGTGGAGTTTGCCACAAAGTCTATACAGGTGCGTGCGGTCTTCT
GTTTGTTGCCACCTGTGGATAGTGTAGAGGGTCTCTCACTCTGTGTGTTG
GGCTGTCCCATATATGCAACAGCTTGAGCAGACCGACATGATCCATGTCG
CTTCCATACTAAGGGCTCTTGGGTTGGGCGCTGCCACTTGTCGCAGACCT
TGTGGTTTGCTTCAAGAGGCACAACACAAATTGATAATCGCCCTTCATCC
ATAGCGTGCAGGGTTTCTCTGGAACTGGTTGTGGAAGCAGTCTTGCCGGT
GCAAACTGCTACTTTAGCAGCAGAGGCTGTCGCCCTAAGCGGAGGGGAGG
GGCCTGCACGTATCCCCAACTTCGTCAAAAGCAAGATACTTCAAGTATAT
GAACAGCGAGGGCGGTCGCCCGCAGTGAGTGCATCGGCATCAGCGCTGGC
ATCAACGATCAACTTCGACCGGCTCATGCCCCACCAAACGTTGCTGGTGT
GTCAGCGTGGCGGAGACGAATGCCGTTGATGGAAGTGTGGAGCGCTGGCG
CGTGAATTGAAGTTGGCAGCGCTCAGCACTATCAACATTCTGCTGCGTAA
AACCTTCTGCTCACGTTGGTGCGGTTCACCAATTTTATGCAGCGTCGCCA
GCGGCGGCAGGTTACGGGGATCTGTAGGTAGGCACAGGAACTTGCGCACA
GGAAGTTCAGCATCGCTATTGCTATTACTCCCACAAGTTGCGAGTACTGC
GGCGCCATGTGGCGTTTGGTATGCATACCGCAGGCGTTTCGCTCGGCGCA
TTTGCAGTGTCCTTGGCTGGCGCTCCGCATGGCACTACGCACAGCCGGCC
ACAGAGCAGGCTGGGCCAGCGACGCCTTACAGCGCACATTCCTGTAACTG
TCGTTGCTATTGGTGCGGGTGGCAGTCCGCCGGCAGGCATTGTATATGGT
ACATCATTACATCGCGGTTGTGAGTGCCGCTGATGATGGCACGCTCTGTG
GAGGCAGAAAGGCACAGGGCTGATATATACCCCCGGTGCGGACAAGGTGC
GTAGGTGGGTACAAAAGGTTTAGGGTTAAGGTTAGGATTAGTTTCAACAC
AACCATGTTTGTGCTTTTTTGGCCGTTGCGCTGCACCACTTTTAAAGCAC
GATTACATGGGCACATCCTGTTGTTCCGGGGTCACCGTCATCACGCAGGC
ATAGAACAGGGTGAGTAGGTACAAGAGTGCACATGTGTGCTGATCCGGTC
GCTCTGCCGCCGCTCCCATTGCAGACGGAGAACAAGGTGATAAAGGCGCA
GATCTGGGACACGGCGGGGCAGGAGCGGTACCGGGCGATCACGAGCGCGT
ACTACCGCGGCGCGGTGGGCGCGCTGCTGGTGTACGACATCTCTAAGCAC
ATCACGTTCGAGAACGTGGAGCGCTGGCTTAAGGTGAGCCGGATATCTTT
GATGTTAAACTTTGAAGTTGGTTGAAGTTTGAAGTTGTTGTCACCGCGGT
GGGCGCGCTGCTGGTGTACGACATCTCTAAGCACATCACATTCGAGAACG
TGGAGCGCTGGCTCAAAGTGAGCCGCATCTTTGATGTTGAAGTTGAAGTT
GTTGTTGCACCGCTTGTTGCACCGCGGCGCGGTGCCGGTGTACGACATCT
CTAAGCACATCACGTTCAAGACCTTGGAGCGCTGACGCAAGGTGAGCCGG
ATATTTTTGATGTTCAAGTTGAAGTTGAAGGTCCACAATCTTCTCAACAA
GCACTCACTTTTGAGGTGTGGTGCACTGGCTCTAAGTCAGCATGGATTTG
GAGTTGAAGTTGCCATCGTACGGCTGCGGCGCGGTGGGCGCGTTCGACAT
CTCAAATCTCATCACTCTCGTAAACGTGGAGCGCTGACTGAAGGTCAGCC
ACATGATATCGTTGAAGTTGAAGTTGCCATCGCACCACGCCGCGGTCAGC
GTACCGTCGGTTCACCACAGCTCGAAGCACATCACGTTTGAGAACGTGCA
GTGCTGACTCAATGTGAGCAACATACATATGATCTTTAATGTTGAAGTTG
AAGTTGTTGTCGCACCACGGCACGGCGGGCGTGCCCCTAGACGAGCAGCA
CAGCGCCTGACACTGTCTGGCCACCTATGCGACATGGTCAACAGAGCTGC
GCGGCACGCTCTGCATAGCCGTGCGCGCTGGCCAGACAGTGCCAGGCGCT
GTGCTGCTCGTCTACCGCAGCGTTTGTAGGGGTGGAGTGCGGTGGGCGCG
TGCTGCTGCACCCCGGGCCCTTCCCCCAACCGGACAGCAAGCTCTGCAGC
AGTGATGCGGCAGCTGCCTGCAGCCTCCCCCCTGCTGCTGCACATACGTG
CGTTCGAATTGCGATAGGACGAGGGTGCACCCTGTTCACTGGTCCCATCT
GCATTGGTGATTCAACGCAAGCCGTGATTAGCCACATGGGGGTCCTAATT
GTGCCCCCAAACCGACCTCCTCCCCCCCCAACCCCCCCCCCAGTGGCTGA
AGAGAGCGCCATGCTGGCCCCAACCTAACCCTAACCCTAACCCTAACCGT
AACGTGTTCTCGGGCCCGATGTCGTTCGCGCCCCCTAAGCCTAACCCTGA
CCCTAACCCTATTTCTCTAGCACAAGCAGTGTCAGCAGACCGTTTGCTGT
TGGCAATGTGCATCATGTGCCATGGTCTGCAACTGTCTGCGGGGTTGCAG
GCGCACGGCGATGTGATGCGGCAGAATGACAGTGTGAATACTGGTGACCT
GCCGCTTTTGCATGAGCGGTGTCACATGCCAAGGTACTCATTTACTCACT
CACTCGCTCACTGGCTCCTCAAGTGAGTCAATGTTGGCAAATGCACTATG
TGTGTGGAGCGTTTGGGTACTTCTGAAGTACCCACCGGGTCTCTGATAAA
TACTTCCTCTGTTGATCTGTGCTCATTTGCACTGTTTTGGTCAGCGCTGT
GACAGCAGCAGTTGAAGTTGACTAGATCTCTTGAATGACCACGCAGCTCA
CTTGGCGTTTCAAGCCGCGGTGCGAACGCTCCGCCTCACAGGAACTGCGG
GATCACGCGGAGGCAAACATAGTGGTCATGCTGGTGGGCAACAAGTGCGA
CTTGAGGCACCTGCGCACCGTGTCGGTGGAGGAGGCCACGGTGAGCTAAC
CTCAATGTGTAGTCTATATGTTTGAAGTAGGTACTTCAAAGTGTTTACTT
GAAGTTAGCTACCGATTTTGGAAAAAAGCAATAGACGCCTTTACTGACAA
ATATGCGACTTGAGGCACCTATGCACTTGTGTCGGTGGAGGAGGCCACAG
TGAGTTTATTAACCGAATATGCCTGTTGAAGTATATTGTGAAGTTGAAGT
TGGTTGCTGTGGAGCTTTTGCCAGCAACAGGTGCGACTTGAGGCACCTGC
GCACTGTGTCGGTGGAGGAGGCCACGGTGAGCTCACCTTGCGGTTTATAA
GTTGACGTATGTGTTTACTTGAAGTTGGTTGCTGTCGAGAATTAGACTTT
GCTGACAACAAGTGCGACTTGAGGCACCTGCGCACTGTGTCGGTGGAGGA
GGCCACGGTGAGTTTATCGAGCGAATCTGCTTGAAGTATATAGTGAATGT
GAAGTTGGTTGCTGTGAAGCCTTTCCGAGCAACAGGTGAGACTTCAAGCA
CCTGCGCACCGTGGCGGTGGACAGTGGTGATATATCTGGATTGAAGTTGG
TGTTCAACTTGAAGTTAGGTGAGGGACAGCGTGTTTTCGATGCTTGCATG
AAACTGTTTGTGTCGACGTGCTGCCGAGACTCATACATGCAAAATCTTCA
TGAAGGCAGAGCAGCAGCATTGGACAGCGCAGCAGAGCGGCTCTGCAAGG
CTCTTGAGGCACAGTTCGTGAACTCTCAAGCAGAAGTGCGCATGGAAATA
TGCTCTCATGCTGAGCCGGACGCTTAACAAGGCAGTACCGGTAGACATCG
CTCCCATCCGCTGTGCCTTCCTCATACACTACTGCTGGGCAATCACACGC
CGCCAATCCACCCGTCCTGGGCTGCGTGCTGCGCGCCACAGCTGCACGTT
TTCATAGCACGTCATTGCTCCAACTGAGCACTCAATAAAAACGCCCCCTG
GTCACACTGCTCCTGATCAATTGCATTCGTACGTAGTGCGCGTGGCGCTT
GCAACTGGCTCAAAGCAGAGAGCGATGCGCAGTTGCCATGTTCACAGGTA
TCACTGCGGACACGGCGGCACTGTTTGACTCGTGGCCAAGTGCCGCAGCA
GCGGCGACCACGATTATTGGTGGAAGGCATTTGCGGCTAACCACCACACT
GTCAGCAACCACACGTTGTCACCTAGAGCTCTACTATCCTTTGATTCGTC
TCCATTGAGATGGTGGGCATTCATCTAGAGCAACACCCCACTGCGCCGCG
CGGCAGGAATTTGCGGAGAAGAACAAGCTGGCGTTCATAGAGACGTCAGC
GCTCGACGCGTCCGGCGTCGACACGGCGTTCCAGCGCATCCTCACCGAAA
TCTACCGGCTCATGAACAAGAAGCAGATGAGCGCGGGGGGCTCGTCCCCC
ACACCAGCGCTCGGCCAGGTGAGCGCTGAGCACAGGGGGTATGTAGTGTA
CATAGATGCCTTAACCTACCGTAGTGAGCGCGGGGGGGCTCGTCCCCCAC
ACCGGCGCTTGGCCAGGTGAACGCTGAGCACACTGGGATATGCAGCGTAT
ATACATAAATGCCCTTAACGTAGATGAGGGTGGGGGCACACCAGCGCTCG
GCCAGGTGAGCGCTGAGCACAGGGGGTTTAAAGCATATGTACATAAATGC
CCTCACGATGAATGAGCGTAGGGGGGCTTGCCTCCGACACCAGTGCTCGG
CCAGGTGAGCATTGAGCAGAAGGGTACATGCATGCCATCACAATTGTGGC
AGCGCTCCGGAGCCTACCGCTGTCGCAAACGTAAGACGCTGAGCACACTG
GGATATGCAGCGTATATACATAAATGCCCTTAACGTAGATGAGGGTGGGG
GCACACCAGCGCTCGGCCAGGTGAGCGCTGAGCACAGGGGGTTTAAAGCA
TATGTACATAAATGCCCTCACGATGAATGAGCGTAGGGGGGCTTGCCTCC
GACACCAGTGCTCGGCCAGGTGAGCATTGAGCAGAAGGGTACATGCATGC
CATCACAATTGTGGCAGCGCTCCGGAGCCTACCGCTGTCGCAAACGTAAG
ACGCTGCAATGACTACGCTGGTTTTGAGCAGCCGAGTTCGAAGGCGCTTG
TTGTGCGATTGTGCATCAGATGAGATTGGTCCACCACTTTCATGGGCAAG
AGTGAGCGTGAATGTGCCTATCGCAGCAACGCTCGCGCAGATCAGTGGGA
CTTGAATGAGCGGACAATGATGCACGCGCGCTTTGTCCATGAATACTACT
GGGTCATGCGGGACTTGCGCCCCTTACGAGGTTGAACCTGCTTGCGGCTG
TATGATTGCAAATGCCACAGTCACATACACTTTCCATGTGCTGATCACTA
GGTGGAAGACTGATGAAAGCAGGAGTCTACTACGCATCTAAGTGTAGCAT
CGGCTTGAGTGGCTGGCATACTCTTGCTTCACAGCAGATCTTGTGCTGCT
ACTTCTCTGGCTTCCCCACTCATGCCGCAATGACCTGATTCCGCTGCCGC
AGGGGGAGACCATTGCTCTATCAAGCGGCGCGACAGACAAGGCGGGATCG
CGAAGCAAGACGGCGTGCAGCGGGTGCAGGACGTAAGCTGGGGCCAGCGC
GCAGTAGGTTGTGTTGTCATGGGGGGGGAGGGAGTGGAGTGGAGTGGAGT
GGGGCAGAACAGTGTAAATGAGGCCATGCAGGGGGGCGCCAGGGGGTTGA
AGACCCAGTTTGTGAACTGAGTTTCTGCTGCGAGTTGGTGTATTGAAATT
GCCGCTCCCGCGCTCGACATTATGCGTGGTCAACAATTAAATGACTGCCA
TTGGAGCACGAGTTGGGTTGTTGCATCC
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Coding sequence (CDS) from alignment at Contig_33:987460..994037-

>mRNA_6016 ID=mRNA_6016|Name=jgi.p|Trimin1|348982|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_33:987460..994037- (Tribonema minus UTEX_B_3156 )
ATGGCGGGCAAGGACGAAGAGTACGATTATCTGTTCAAAGTTGTGCTGAT
TGGGGACTCTGGCGTGGGCAAATCAAATCTGCTGAGCCGGTTCACACGGA
ATGAGTTCAACTTGGAGAGCAAGAGCACAATCGGAGTGGAGTTTGCCACA
AAGTCTATACAGACGGAGAACAAGGTGATAAAGGCGCAGATCTGGGACAC
GGCGGGGCAGGAGCGGTACCGGGCGATCACGAGCGCGTACTACCGCGGCG
CGGTGGGCGCGCTGCTGGTGTACGACATCTCTAAGCACATCACGTTCGAG
AACGTGGAGCGCTGGCTTAAGGAACTGCGGGATCACGCGGAGGCAAACAT
AGTGGTCATGCTGGTGGGCAACAAGTGCGACTTGAGGCACCTGCGCACCG
TGTCGGTGGAGGAGGCCACGGAATTTGCGGAGAAGAACAAGCTGGCGTTC
ATAGAGACGTCAGCGCTCGACGCGTCCGGCGTCGACACGGCGTTCCAGCG
CATCCTCACCGAAATCTACCGGCTCATGAACAAGAAGCAGATGAGCGCGG
GGGGCTCGTCCCCCACACCAGCGCTCGGCCAGGGGGAGACCATTGCTCTA
TCAAGCGGCGCGACAGACAAGGCGGGATCGCGAAGCAAGACGGCGTGCAG
CGGGTGCAGGACGTAA
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