mRNA_6001 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164773
Unique NamemRNA_6001
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A836CE11_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE11_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.300e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS
Sbjct:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: Q9MG87_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MG87_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.270e-49
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLAVIFTSLQ FEY T+SF++SDG+YGS FY+ATGFHGFHV +GT F+ VC +R+Y+NHF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  174 VLAVIFTSLQAFEYVTSSFTISDGVYGSTFYMATGFHGFHVFVGTCFLIVCLIRVYLNHFTREHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 267
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A348AYQ7_9EUKA (Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina amphinema TaxID=2108040 RepID=A0A348AYQ7_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 4.860e-48
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLA+IFT+LQVFEY TASF +SDGIYGS FY++TGFHGFHV+IGT F+ VC LR   NHF+  HHFGFEAAAWYWHFVDVVWLFLF C+YWWG+
Sbjct:  170 VLAIIFTALQVFEYNTASFDISDGIYGSTFYMSTGFHGFHVLIGTSFLAVCLLRQLKNHFTTDHHFGFEAAAWYWHFVDVVWLFLFTCVYWWGN 263
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.430e-47
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    7 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 279
            A+ FT++Q FEY  A FSMSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RL++ HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU)

HSP 1 Score: 158 bits (399), Expect = 5.410e-47
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    7 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 279
            AV FT++Q FEY  A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  119 AVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 209
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: D2Z239_HETAK (Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z239_HETAK)

HSP 1 Score: 159 bits (403), Expect = 6.710e-47
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLAV+FT+LQ FEY TA FS++D +YGS FY+ TGFHGFHV IGT F+ VC++RLY++HF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  178 VLAVVFTALQGFEYLTAPFSIADSVYGSTFYLTTGFHGFHVFIGTCFLTVCTVRLYLHHFTRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 271
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 9.750e-47
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    7 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 279
            AV FT+LQ FEY  A F+MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWG 267
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BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A2P1G7I4_9CHLO (Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca zopfii TaxID=3112 RepID=A0A2P1G7I4_9CHLO)

HSP 1 Score: 159 bits (401), Expect = 1.210e-46
Identity = 67/94 (71.28%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLAVIFT  Q +EY  A FS++DGIYGS F+++TGFHGFHVIIGT+F+ +C++R+Y+NHFS GHHFGFEAAAWYWH VDVVWLFLF+C+Y+WG 
Sbjct:  173 VLAVIFTGFQAYEYIEAPFSIADGIYGSTFFLSTGFHGFHVIIGTIFLAICAVRVYLNHFSSGHHFGFEAAAWYWHMVDVVWLFLFICVYYWGG 266
[Close]
BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A7U3S048_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3S048_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.550e-46
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLA+ FT LQ FEY  A F MSD +YG+ FY+ATGFHGFHVIIGTLF+ VC+LRL+ +HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  176 VLALFFTGLQAFEYLHAPFGMSDSVYGASFYMATGFHGFHVIIGTLFLFVCTLRLFSHHFSRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 269
[Close]
BLAST of jgi.p|Trimin1|164773 vs. uniprot
Match: A0A519UKM7_9SPHI (Cytochrome-c oxidase n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519UKM7_9SPHI)

HSP 1 Score: 157 bits (398), Expect = 3.420e-46
Identity = 71/94 (75.53%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    1 VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 282
            VLA+IFT+LQ +EY +A F++SDGIYGS FY+ATGFHGFHVI+GT F+ VC  R+Y NHF+R HHFGFEAAAWYWHFVDVVWL LFV IYWWGS
Sbjct:  174 VLALIFTALQGYEYISAPFTISDGIYGSTFYMATGFHGFHVIVGTCFLAVCLARVYFNHFTREHHFGFEAAAWYWHFVDVVWLILFVSIYWWGS 267
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164773 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE11_9STRA1.300e-64100.00Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema m... [more]
Q9MG87_9STRA3.270e-4977.66Cytochrome c oxidase subunit 3 n=1 Tax=Synura synu... [more]
A0A348AYQ7_9EUKA4.860e-4876.60Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina am... [more]
E6ZES3_ECTSI2.430e-4775.82Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
G1UD76_CUTMU5.410e-4776.92Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=... [more]
D2Z239_HETAK6.710e-4774.47Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma... [more]
Q2TUF2_9PHAE9.750e-4778.02Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce... [more]
A0A2P1G7I4_9CHLO1.210e-4671.28Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca ... [more]
A0A7U3S048_9STRA2.550e-4676.60Cytochrome c oxidase subunit 3 n=1 Tax=Schizocladi... [more]
A0A519UKM7_9SPHI3.420e-4675.53Cytochrome-c oxidase n=1 Tax=Pedobacter sp. TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:883565..883849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164773|e_gw1.33.48.1
KEGG TC3.D.4.4,3.D.4.6
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00016
KEGG ReactionR00081
KEGG ModuleM00155
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG koko:K02276
EC1.9.3.1
Descriptioncytochrome c oxidase
COG categoryC
Max annot lvl204441|Rhodospirillales
EggNOG OGsCOG1845@1|root,COG1845@2|Bacteria,1MUCK@1224|Proteobacteria,2TQWA@28211|Alphaproteobacteria,2JPFX@204441|Rhodospirillales
Evalue4.71e-45
Seed ortholog570952.ATVH01000015_gene1353
Hectar predicted targeting categoryother localisation
TranscriptId165095
TrackFilteredModels1
ProteinId164773
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164773gene_6001Tribonema minus UTEX_B_3156 geneContig_33 883565..883849 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6001_1exon_6001_1Tribonema minus UTEX_B_3156 exonContig_33 883565..883849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6001CDS_6001Tribonema minus UTEX_B_3156 CDSContig_33 883565..883849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164773Trimin1|164773|e_gw1.33.48.1Tribonema minus UTEX_B_3156 polypeptideContig_33 883565..883849 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6001 ID=mRNA_6001|Name=jgi.p|Trimin1|164773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_33:883565..883849- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTAGCAGTAATTTTTACAAGTTTACAAGTATTTGAATACAAAACAGC
AAGTTTTAGCATGTCTGATGGGATTTACGGTTCTGTTTTTTATATAGCAA
CAGGGTTCCATGGATTTCATGTTATTATTGGTACACTTTTTATTGGTGTG
TGTTCTTTACGCTTGTATATAAATCATTTCAGTCGTGGTCATCATTTTGG
CTTTGAAGCTGCTGCTTGGTATTGGCATTTTGTTGATGTGGTATGGTTAT
TCCTTTTTGTTTGTATTTACTGGTGGGGATCTTAA
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protein sequence of jgi.p|Trimin1|164773

>Trimin1|164773|e_gw1.33.48.1 ID=Trimin1|164773|e_gw1.33.48.1|Name=jgi.p|Trimin1|164773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
VLAVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGV
CSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS*
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mRNA from alignment at Contig_33:883565..883849-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6001 ID=mRNA_6001|Name=jgi.p|Trimin1|164773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_33:883565..883849- (Tribonema minus UTEX_B_3156 )
GTGCTAGCAGTAATTTTTACAAGTTTACAAGTATTTGAATACAAAACAGC
AAGTTTTAGCATGTCTGATGGGATTTACGGTTCTGTTTTTTATATAGCAA
CAGGGTTCCATGGATTTCATGTTATTATTGGTACACTTTTTATTGGTGTG
TGTTCTTTACGCTTGTATATAAATCATTTCAGTCGTGGTCATCATTTTGG
CTTTGAAGCTGCTGCTTGGTATTGGCATTTTGTTGATGTGGTATGGTTAT
TCCTTTTTGTTTGTATTTACTGGTGGGGATCTTAA
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Coding sequence (CDS) from alignment at Contig_33:883565..883849-

>mRNA_6001 ID=mRNA_6001|Name=jgi.p|Trimin1|164773|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_33:883565..883849- (Tribonema minus UTEX_B_3156 )
GTGCTAGCAGTAATTTTTACAAGTTTACAAGTATTTGAATACAAAACAGC
AAGTTTTAGCATGTCTGATGGGATTTACGGTTCTGTTTTTTATATAGCAA
CAGGGTTCCATGGATTTCATGTTATTATTGGTACACTTTTTATTGGTGTG
TGTTCTTTACGCTTGTATATAAATCATTTCAGTCGTGGTCATCATTTTGG
CTTTGAAGCTGCTGCTTGGTATTGGCATTTTGTTGATGTGGTATGGTTAT
TCCTTTTTGTTTGTATTTACTGGTGGGGATCTTAA
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