mRNA_5955 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA) HSP 1 Score: 530 bits (1366), Expect = 2.120e-189 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 1
Query: 1 MSEAVKPAKPKKLPXXXXXHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQSPQPQQPLRTAEAERAIARAVEGAADSDAXXXXXXXXXXXXXXXXAKSAADPSKR 888
MSEAVKPAKPKKLPXXXXXHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQSPQPQQPLRTAEAERAIARAVEGAADSDAXXXXXXXXXXXXXXXXAKSAADPSKR
Sbjct: 1 MSEAVKPAKPKKLPXXXXXHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQSPQPQQPLRTAEAERAIARAVEGAADSDAXXXXXXXXXXXXXXXXAKSAADPSKR 296
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.230e-101 Identity = 152/221 (68.78%), Postives = 173/221 (78.28%), Query Frame = 1
Query: 61 EDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQ 723
EDGLTRYP+ SPQGVLRGLD GT VFA SG VTAGQ GMDLLGC IVGTITA GGGTVRD+LLGNTPVFWM ETEYL++CLA VG FF +S LAE+G D LLNW DA+GVGAFC IGAQ VR+ LS +CVACGM T+TFGGVIRDVLC RPPRIL SH EIYASTA++G+ Y+A + A P++RI GF +A ALR+ A+ +RLPTW Q
Sbjct: 69 EDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERGVRDDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLPTWTQ 289
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.970e-99 Identity = 150/221 (67.87%), Postives = 172/221 (77.83%), Query Frame = 1
Query: 61 EDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQ 723
EDGLTRYP+ SPQGVLRGLD GT VFA SG VTAG GMDLLGC IVGTITA GGGTVRD+LLGNTPVFWM ETEYL++CLA +VG FF +S LAE+G D LLNW DA+GVGAFC IGAQ VR+ LS +CVACGM T+TFGGVIRDVLC RPPRIL SH EIYASTA++G+ Y+A + A P++RI GF +A ALR+ A+ +RLP W Q
Sbjct: 151 EDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLWSYLAERGVRNDMALLNWVDAMGVGAFCCIGAQAGVRKGLSNVVCVACGMLTSTFGGVIRDVLCSRPPRILFSHCEIYASTAVLGSAVYIATKAAGLPPVVRIMSGFLSAVALRVLAFTTDIRLPIWTQ 371
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK) HSP 1 Score: 261 bits (668), Expect = 6.470e-83 Identity = 138/221 (62.44%), Postives = 159/221 (71.95%), Query Frame = 1
Query: 58 HEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTD-SELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTW 717
H DG+ R+PS S+ G+LRGLD FGTVVFA G VTAG AGMDLLGCTIVGT+TAVGGGTVRDLLLGN PVFWM ETEY+ + LA A FF + L E + S++L W DA GVGAF VIGAQN +R L A+ V CGM TATFGG+IRDVLCQ+PPRILHS +E+YA+TAL+GA Y A R P +I GF AA A R AAW +RLP W
Sbjct: 102 HTDGMPRFPSTSAG-GLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEHWHLEENSDILRWWDACGVGAFSVIGAQNGLRAGLHPAVAVVCGMITATFGGMIRDVLCQKPPRILHSQSEVYATTALIGAAAYTAARSL--PPAAKIGLGFSAAVASRYAAWTYDIRLPNW 319
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A0G4I443_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I443_9ALVE) HSP 1 Score: 233 bits (594), Expect = 3.290e-72 Identity = 122/227 (53.74%), Postives = 150/227 (66.08%), Query Frame = 1
Query: 37 LPXXXXXHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRAR--ATPMLRIAGGFGAAFALRIAAWKLQLRLP 711
LP H DG+TRYPSLSS GVLRG D GT+ F+ SG + A AG+D LGCT+VGT TAVGGGT+RDLL+GN PVFWM ETEY+++ L + FF + G D ++ W DALGVGAF VIG QN +R LS+ C+ CG+ TATFGG +RDV+C+RP RILHSHAEIY +TAL AGTY+ +R + LRI G A R A K ++LP
Sbjct: 45 LPNPPSVHPDGMTRYPSLSSMHGVLRGCDYLGTISFSVSGSLIAATAGLDALGCTLVGTTTAVGGGTIRDLLIGNRPVFWMDETEYVWMALITSAAAFFLFDHQTFVG--EDGPIMFWTDALGVGAFAVIGCQNGLRLGLSSLPCMLCGLMTATFGGAVRDVVCRRPVRILHSHAEIYGTTALFSAGTYLLVRALTLGSGSGLRILCGVLAGIGARYLAVKHDVKLP 269
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A7S0IDQ1_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IDQ1_MICPS) HSP 1 Score: 236 bits (602), Expect = 4.440e-72 Identity = 130/232 (56.03%), Postives = 152/232 (65.52%), Query Frame = 1
Query: 37 LPXXXXXHEDGLTRYP--SLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGN-TPVFWMTETEYLYICLAAAVGTFFTYSALAEQ-GFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWA 720
+P H D + R+P ++ G+LRG D FGT VFA +G + A GMD+LG TIVGTITAVGGGTVRDLLLG FWM E EYL+IC+ V TF + L G E ++WADA+GVGAFCVIGA N +R + A VACGMFTATFGGVIRDVL RP RILHS+ +IYA+TAL GA TYM +R A A RI G G A ALR AW LRLPT+A
Sbjct: 109 VPATPAPHPDSMPRFPWSDGATVPGLLRGADWFGTAVFAMTGTLAAATRGMDILGSTIVGTITAVGGGTVRDLLLGRGRRAFWMEEIEYLWICVGTGVATFLAWPHLERACGVKDTDEWVDWADAIGVGAFCVIGAMNGIRAGVPCAAAVACGMFTATFGGVIRDVLMSRPVRILHSYTDIYATTALTGATTYMLVRAAGAPVSARILAGAGTAIALRKLAWSNDLRLPTYA 340
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD) HSP 1 Score: 230 bits (587), Expect = 5.080e-72 Identity = 124/219 (56.62%), Postives = 149/219 (68.04%), Query Frame = 1
Query: 64 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQG--FTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPT 714
DG+ R+P+ S+ G+LRGLD GT+VFA+SG V A GMDLLGC++VG ITAVGGGTVRDL LGN PVFWM ETEYL +CL + T + L +T ++ ++DA G+ AFCVIGAQN +R + I V CGM TATFGGVIRDVLCQRP RILHSHAE+YAS A VGA +Y+ R RI G GAA RIAA+ +RLPT
Sbjct: 6 DGMPRFPNWSAG-GLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYSDAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPT 223
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 231 bits (589), Expect = 9.410e-72 Identity = 114/223 (51.12%), Postives = 146/223 (65.47%), Query Frame = 1
Query: 64 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYS------ALAEQGFTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPT 714
+ +TRYPSL S G+LR LD GTV FA G + AG+AGMDLLGC +G ITA+GGGT RDLLLG TPVFW+ E EYL +C+ ++ TF+ + L+ G + D L W D +G+GAF V+G Q+ +RRRL V T +FGGV RDV+ + P R++HSHAE+YA+TA G+ Y+ R A A P+LR+A GFG A R AAW L LRLPT
Sbjct: 44 ESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHLRHMPILSASGSSDDGALPRWLDTIGLGAFAVVGTQHGIRRRLHPLATVVIATITCSFGGVTRDVMTKAPIRVMHSHAELYATTAAAGSCAYLIARAAVADPLLRMAAGFGVTVAARFAAWTLDLRLPT 266
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD) HSP 1 Score: 230 bits (587), Expect = 8.520e-71 Identity = 124/219 (56.62%), Postives = 149/219 (68.04%), Query Frame = 1
Query: 64 DGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQG--FTTDSELLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPT 714
DG+ R+P+ S+ G+LRGLD GT+VFA+SG V A GMDLLGC++VG ITAVGGGTVRDL LGN PVFWM ETEYL +CL + T + L +T ++ ++DA G+ AFCVIGAQN +R + I V CGM TATFGGVIRDVLCQRP RILHSHAE+YAS A VGA +Y+ R RI G GAA RIAA+ +RLPT
Sbjct: 96 DGMPRFPNWSAG-GLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTRDSNSSSTFKKVELYSDAAGLSAFCVIGAQNGIRLGVPPIISVVCGMMTATFGGVIRDVLCQRPARILHSHAEVYASCAAVGAASYVLAARMMMAMPARIGVGVGAALTARIAAFTYDIRLPT 313
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Match: A0A830HNH6_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HNH6_9CHLO) HSP 1 Score: 221 bits (562), Expect = 4.960e-66 Identity = 123/221 (55.66%), Postives = 146/221 (66.06%), Query Frame = 1
Query: 70 LTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLG-NTPVFWMTETEYLYICLAAAVGTFFTYSALAEQGFTTDSE-LLNWADALGVGAFCVIGAQNAVRRRLSTAICVACGMFTATFGGVIRDVLCQRPPRILHSHAEIYASTALVGAGTYMALRRARATPMLRIAGGFGAAFALRIAAWKLQLRLPTWAQS 726
L R+P ++ G+LR LD GTV FA SG +TA AGMD LGC IVGTITAVGGGTVRD LLG P FWM E EYLY+C+A TFF + +++ +E ++ D LG+GAFCVIGA N VR + CGM TATFGGVIRD LC+RP RILHSH E+YA+ ALVGA +Y+A R A L I G GAAFALR A+ LRLPT + S
Sbjct: 167 LPRFPEPNAG-GLLRFLDYVGTVAFASSGALTASAAGMDALGCGIVGTITAVGGGTVRDFLLGVRGPCFWMAEAEYLYMCIATTAATFFLWPNISQSQMNPTAEAVIETGDFLGLGAFCVIGAHNGVRAGVPLVAAAICGMATATFGGVIRDTLCKRPVRILHSHQELYATCALVGATSYLASRGAGLPTALNIFVGMGAAFALRYASMNYGLRLPTLSSS 386 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164760 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5955 ID=mRNA_5955|Name=jgi.p|Trimin1|164760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_33:505359..507776- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCGAGGCAGTAAAACCTGCCAAGCCAAAGAAGCTGCCGCCGCCTCCback to top protein sequence of jgi.p|Trimin1|164760 >Trimin1|164760|e_gw1.33.68.1 ID=Trimin1|164760|e_gw1.33.68.1|Name=jgi.p|Trimin1|164760|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp MSEAVKPAKPKKLPPPPPPHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYback to top mRNA from alignment at Contig_33:505359..507776- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5955 ID=mRNA_5955|Name=jgi.p|Trimin1|164760|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2418bp|location=Sequence derived from alignment at Contig_33:505359..507776- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_33:505359..507776- >mRNA_5955 ID=mRNA_5955|Name=jgi.p|Trimin1|164760|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_33:505359..507776- (Tribonema minus UTEX_B_3156 )back to top |