mRNA_5939 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A835YWY3_9STRA (EH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY3_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.040e-51 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ Sbjct: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 78
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S4DHG4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHG4_HETAK) HSP 1 Score: 63.5 bits (153), Expect = 5.180e-11 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1 WQPP-PVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 W P P + + YD L+SIA +++ G ++GKAAV FFSLSGL +LK +W + D + L F+ A+RLIA+AQ Sbjct: 39 WAPAHPEERSYYDGLFSIA--DTANAGSIAGKAAVSFFSLSGLDFSILKQVWDIADARGEHMLRREDFYVAMRLIAMAQ 115
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S0BMA8_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMA8_9RHOD) HSP 1 Score: 63.9 bits (154), Expect = 2.670e-10 Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 W P Q A Y+ ++ AAA+ + G V+G A + F+ SGLPR LL+ +WSLCD G LD+ F A+ LI L + Sbjct: 81 WTVLPAQNARYEEMF--AAADPADSGYVNGPRAAELFNKSGLPRQLLRQVWSLCDVTADGRLDIHEFKNAVHLIKLLR 156
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A1V9YEP4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEP4_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.140e-9 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 W P + A Y +++IA A V GKAAVDFF+ SGLP +LK +W+L ++ L+ F AL LIALAQ Sbjct: 2 WVKSPEEDAFYGRMFAIADAEKLRQ--VQGKAAVDFFTKSGLPPAVLKQVWNLASSKMQPYLERDEFDVALGLIALAQ 77
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S3EBQ4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBQ4_9RHOD) HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 W P Q A Y ++ AAA+ + G V+G A + F+ SGLPR LL+ +WSL D G LD+ F A+ LI L + Sbjct: 210 WTVSPAQNAKYQEMF--AAADPADSGYVNGPRAAELFNKSGLPRQLLRQVWSLSDLTADGRLDVHEFKNAVHLIKLLR 285
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A485L4F8_9STRA (Aste57867_15766 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4F8_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.680e-8 Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 W+ + Y ++ +A + + G + GKAAV+FF+ SGLP +LK +WSL + L+ F+ AL LIALAQ Sbjct: 2 WEKSHDEQVFYSRMFQLADVDKT--GKIEGKAAVEFFTKSGLPAVVLKQVWSLASSNMQPYLNQEEFNVALGLIALAQ 77
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: T2M3V9_HYDVU (Epidermal growth factor receptor substrate 15-like 1 n=6 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3V9_HYDVU) HSP 1 Score: 53.1 bits (126), Expect = 2.690e-6 Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 1 Query: 31 YDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIA 225 YD + + N GLVSG D SGLP+P+L HIW+LCD +G L+ F A+ LIA Sbjct: 253 YDQKFILLDTNKD--GLVSGAEIKDILIASGLPQPVLAHIWNLCDTNNSGLLNSEQFALAMHLIA 315
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S0NI68_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI68_MICPS) HSP 1 Score: 52.8 bits (125), Expect = 3.620e-6 Identity = 28/59 (47.46%), Postives = 33/59 (55.93%), Query Frame = 1 Query: 58 ANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 A+ G V+GK AV+FF LSGLP+ L W L D G L F ALR+IAL Q Sbjct: 30 ADQDQDGRVTGKDAVEFFGLSGLPKEALSRAWQLADLNRQGYLGKDQFVRALRVIALVQ 88
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A067MNH2_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MNH2_9AGAM) HSP 1 Score: 52.4 bits (124), Expect = 5.110e-6 Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234 ++P P++ A+ + +++ A+ G+++G AAV FFS S LP L IWSL D G L G A+RLI AQ Sbjct: 8 FKPSPLELALTEQIFN--QADPDKIGIITGDAAVKFFSGSNLPPTTLGEIWSLADSDNNGWLTQKGVAMAVRLIGWAQ 83
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A6S7JGJ2_PARCT (Epidermal growth factor receptor substrate 15-like 1 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JGJ2_PARCT) HSP 1 Score: 51.6 bits (122), Expect = 6.310e-6 Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 1 Query: 1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLI 222 W + + YD L+ A+ LV+G + F SGLP+PLL HIW LCD TG L+ F A+ LI Sbjct: 70 WVVTAAEKSKYDALFK--TADKDNDNLVTGDEVKNIFMASGLPQPLLAHIWGLCDVNNTGRLNGEQFCLAMYLI 141 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGCAGCCGCCACCTGTGCAGGCCGCCATCTACGACCACCTCTACAGCATback to top protein sequence of jgi.p|Trimin1|129700 >Trimin1|129700|gw1.33.7.1 ID=Trimin1|129700|gw1.33.7.1|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIback to top mRNA from alignment at Contig_33:338670..338903- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_33:338670..338903- >mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )back to top |