mRNA_5939 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129700
Unique NamemRNA_5939
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A835YWY3_9STRA (EH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY3_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.040e-51
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ
Sbjct:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 78          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S4DHG4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHG4_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 5.180e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 WQPP-PVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            W P  P + + YD L+SIA  +++  G ++GKAAV FFSLSGL   +LK +W + D +    L    F+ A+RLIA+AQ
Sbjct:   39 WAPAHPEERSYYDGLFSIA--DTANAGSIAGKAAVSFFSLSGLDFSILKQVWDIADARGEHMLRREDFYVAMRLIAMAQ 115          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S0BMA8_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMA8_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 2.670e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            W   P Q A Y+ ++  AAA+ +  G V+G  A + F+ SGLPR LL+ +WSLCD    G LD+  F  A+ LI L +
Sbjct:   81 WTVLPAQNARYEEMF--AAADPADSGYVNGPRAAELFNKSGLPRQLLRQVWSLCDVTADGRLDIHEFKNAVHLIKLLR 156          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A1V9YEP4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEP4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.140e-9
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            W   P + A Y  +++IA A       V GKAAVDFF+ SGLP  +LK +W+L   ++   L+   F  AL LIALAQ
Sbjct:    2 WVKSPEEDAFYGRMFAIADAEKLRQ--VQGKAAVDFFTKSGLPPAVLKQVWNLASSKMQPYLERDEFDVALGLIALAQ 77          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S3EBQ4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBQ4_9RHOD)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            W   P Q A Y  ++  AAA+ +  G V+G  A + F+ SGLPR LL+ +WSL D    G LD+  F  A+ LI L +
Sbjct:  210 WTVSPAQNAKYQEMF--AAADPADSGYVNGPRAAELFNKSGLPRQLLRQVWSLSDLTADGRLDVHEFKNAVHLIKLLR 285          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A485L4F8_9STRA (Aste57867_15766 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4F8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.680e-8
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            W+    +   Y  ++ +A  + +  G + GKAAV+FF+ SGLP  +LK +WSL    +   L+   F+ AL LIALAQ
Sbjct:    2 WEKSHDEQVFYSRMFQLADVDKT--GKIEGKAAVEFFTKSGLPAVVLKQVWSLASSNMQPYLNQEEFNVALGLIALAQ 77          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: T2M3V9_HYDVU (Epidermal growth factor receptor substrate 15-like 1 n=6 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3V9_HYDVU)

HSP 1 Score: 53.1 bits (126), Expect = 2.690e-6
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   31 YDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIA 225
            YD  + +   N    GLVSG    D    SGLP+P+L HIW+LCD   +G L+   F  A+ LIA
Sbjct:  253 YDQKFILLDTNKD--GLVSGAEIKDILIASGLPQPVLAHIWNLCDTNNSGLLNSEQFALAMHLIA 315          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A7S0NI68_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI68_MICPS)

HSP 1 Score: 52.8 bits (125), Expect = 3.620e-6
Identity = 28/59 (47.46%), Postives = 33/59 (55.93%), Query Frame = 1
Query:   58 ANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            A+    G V+GK AV+FF LSGLP+  L   W L D    G L    F  ALR+IAL Q
Sbjct:   30 ADQDQDGRVTGKDAVEFFGLSGLPKEALSRAWQLADLNRQGYLGKDQFVRALRVIALVQ 88          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A067MNH2_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MNH2_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 5.110e-6
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLIALAQ 234
            ++P P++ A+ + +++   A+    G+++G AAV FFS S LP   L  IWSL D    G L   G   A+RLI  AQ
Sbjct:    8 FKPSPLELALTEQIFN--QADPDKIGIITGDAAVKFFSGSNLPPTTLGEIWSLADSDNNGWLTQKGVAMAVRLIGWAQ 83          
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Match: A0A6S7JGJ2_PARCT (Epidermal growth factor receptor substrate 15-like 1 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JGJ2_PARCT)

HSP 1 Score: 51.6 bits (122), Expect = 6.310e-6
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = 1
Query:    1 WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHIWSLCDPQLTGALDMPGFHGALRLI 222
            W     + + YD L+    A+     LV+G    + F  SGLP+PLL HIW LCD   TG L+   F  A+ LI
Sbjct:   70 WVVTAAEKSKYDALFK--TADKDNDNLVTGDEVKNIFMASGLPQPLLAHIWGLCDVNNTGRLNGEQFCLAMYLI 141          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129700 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835YWY3_9STRA3.040e-51100.00EH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S4DHG4_HETAK5.180e-1144.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0BMA8_9RHOD2.670e-1042.31Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A1V9YEP4_9STRA7.140e-943.59Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3EBQ4_9RHOD1.280e-841.03Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A485L4F8_9STRA4.680e-838.46Aste57867_15766 protein n=1 Tax=Aphanomyces stella... [more]
T2M3V9_HYDVU2.690e-643.08Epidermal growth factor receptor substrate 15-like... [more]
A0A7S0NI68_MICPS3.620e-647.46Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A067MNH2_9AGAM5.110e-638.46Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
A0A6S7JGJ2_PARCT6.310e-639.19Epidermal growth factor receptor substrate 15-like... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:338670..338903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129700|gw1.33.7.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04152,ko04921,map04152,map04921
KEGG koko:K08292
EC2.7.11.20
Descriptionendocytosis
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0998@1|root,KOG0998@2759|Eukaryota
Evalue5.16e-11
Seed ortholog112098.XP_008606481.1
Hectar predicted targeting categoryother localisation
TranscriptId130022
TrackFilteredModels1
ProteinId129700
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129700gene_5939Tribonema minus UTEX_B_3156 geneContig_33 338670..338903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5939_1exon_5939_1Tribonema minus UTEX_B_3156 exonContig_33 338670..338903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5939CDS_5939Tribonema minus UTEX_B_3156 CDSContig_33 338670..338903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129700Trimin1|129700|gw1.33.7.1Tribonema minus UTEX_B_3156 polypeptideContig_33 338670..338903 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCAGCCGCCACCTGTGCAGGCCGCCATCTACGACCACCTCTACAGCAT
CGCCGCAGCAAACAGCAGCACACCGGGCCTCGTTTCTGGCAAGGCAGCTG
TTGACTTCTTCAGCCTCAGCGGCTTGCCCAGGCCTTTGCTAAAGCACATC
TGGTCTCTGTGCGACCCGCAGCTGACAGGGGCTCTTGACATGCCAGGCTT
CCACGGCGCCCTGCGGCTAATCGCACTGGCGCAG
back to top

protein sequence of jgi.p|Trimin1|129700

>Trimin1|129700|gw1.33.7.1 ID=Trimin1|129700|gw1.33.7.1|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
WQPPPVQAAIYDHLYSIAAANSSTPGLVSGKAAVDFFSLSGLPRPLLKHI
WSLCDPQLTGALDMPGFHGALRLIALAQ
back to top

mRNA from alignment at Contig_33:338670..338903-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )
TGGCAGCCGCCACCTGTGCAGGCCGCCATCTACGACCACCTCTACAGCAT CGCCGCAGCAAACAGCAGCACACCGGGCCTCGTTTCTGGCAAGGCAGCTG TTGACTTCTTCAGCCTCAGCGGCTTGCCCAGGCCTTTGCTAAAGCACATC TGGTCTCTGTGCGACCCGCAGCTGACAGGGGCTCTTGACATGCCAGGCTT CCACGGCGCCCTGCGGCTAATCGCACTGGCGCAG
back to top

Coding sequence (CDS) from alignment at Contig_33:338670..338903-

>mRNA_5939 ID=mRNA_5939|Name=jgi.p|Trimin1|129700|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_33:338670..338903- (Tribonema minus UTEX_B_3156 )
TGGCAGCCGCCACCTGTGCAGGCCGCCATCTACGACCACCTCTACAGCAT
CGCCGCAGCAAACAGCAGCACACCGGGCCTCGTTTCTGGCAAGGCAGCTG
TTGACTTCTTCAGCCTCAGCGGCTTGCCCAGGCCTTTGCTAAAGCACATC
TGGTCTCTGTGCGACCCGCAGCTGACAGGGGCTCTTGACATGCCAGGCTT
CCACGGCGCCCTGCGGCTAATCGCACTGGCGCAG
back to top