mRNA_5937 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348943
Unique Name	mRNA_5937
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348943 vs. uniprot
Match: A0A836CFR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR9_9STRA)

HSP 1 Score: 336 bits (861), Expect = 4.720e-110
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1

Query:    1 MASLSLHLTDGDVDAVVCIAGAAPQGTVSRDMFATLLSSSRPPSPHHPEXXXXXXXXAPSPDEALRLSDASLGRNFGGLAAGIKDRLLGLMASGSLDLSDTLHSLAPSSDSPQPAAITSXXXXXXXXXXXXXXXXSIGSCRSSASSKRGRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRAAARVQRAVRRWLMRTRAAAALCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQRAAVTDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERLXXXXXXXXXXXXXXXXXXXXVAAVERRYGARSAAAEGLARKRGAAARPLRHIKSTRPLLA 1029
            MASLSLHLTDGDVDAVVCIAGAAPQGTVSRDMFATLLSSSRPPSPHHPEXXXXXXXXAPSPDEALRLSDASLGRNFGGLAAGIKDRLLGLMASGSLDLSDTLHSLAPSSDSPQPAAITSXXXXXXXXXXXXXXXXSIGSCRSSASSKRGRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRAAARVQRAVRRWLMRTRAAAALCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQRAAVTDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERLXXXXXXXXXXXXXXXXXXXXVAAVERRYGARSAAAEGLARKRGAAARPLRHIKSTRPLLA
Sbjct:    1 MASLSLHLTDGDVDAVVCIAGAAPQGTVSRDMFATLLSSSRPPSPHHPEXXXXXXXXAPSPDEALRLSDASLGRNFGGLAAGIKDRLLGLMASGSLDLSDTLHSLAPSSDSPQPAAITSXXXXXXXXXXXXXXXXSIGSCRSSASSKRGRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRAAARVQRAVRRWLMRTRAAAALCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQRAAVTDETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERLXXXXXXXXXXXXXXXXXXXXVAAVERRYGARSAAAEGLARKRGAAARPLRHIKSTRPLLA 343

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348943 vs. uniprot

BLAST of jgi.p|Trimin1|348943 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CFR9_9STRA	4.720e-110	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:329119..332525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348943\|estExt_Genemark1.C_Ctg_330049
Hectar predicted targeting category	other localisation
TranscriptId	349265
Track	FilteredModels1
ProteinId	348943

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348943	gene_5937	Tribonema minus UTEX_B_3156	gene	Contig_33 329119..332525 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348943	Trimin1\|348943\|estExt_Genemark1.C_Ctg_330049	Tribonema minus UTEX_B_3156	polypeptide	Contig_33 329331..332525 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5937_5	exon_5937_5	Tribonema minus UTEX_B_3156	exon	Contig_33 329119..329376 -
exon_5937_4	exon_5937_4	Tribonema minus UTEX_B_3156	exon	Contig_33 330243..330770 -
exon_5937_3	exon_5937_3	Tribonema minus UTEX_B_3156	exon	Contig_33 331248..331425 -
exon_5937_2	exon_5937_2	Tribonema minus UTEX_B_3156	exon	Contig_33 331709..331974 -
exon_5937_1	exon_5937_1	Tribonema minus UTEX_B_3156	exon	Contig_33 332512..332525 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5937	UTR3_5937	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_33 329119..329330 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5937	CDS_5937	Tribonema minus UTEX_B_3156	CDS	Contig_33 332512..332525 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_33:329119..332525-
coding sequence from alignment at Contig_33:329119..332525-

spliced messenger RNA

>mRNA_5937 ID=mRNA_5937|Name=jgi.p|Trimin1|348943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1244bp|location=Sequence derived from alignment at Contig_33:329119..332525- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCATTAAGTCTGCATCTGACAGATGGGGACGTCGATGCGGTAGT
GTGCATAGCGGGGGCTGCGCCGCAGGGCACTGTCAGCCGCGACATGTTTG
CAACACTGCTCAGCAGCAGCCGACCGCCGTCACCACACCACCCTGAAGCA
GCACTAGCAGCAGCAGCAGCAGCACCATCGCCTGACGAAGCACTGCGGCT
ATCGGACGCGAGCCTGGGACGCAATTTTGGCGGGCTGGCAGCGGGGATCA
AGGATCGGCTGTTGGGACTCATGGCCTCAGGCAGCCTGGACTTGAGCGAC
ACGCTGCACTCCCTTGCGCCAAGCAGTGACTCTCCGCAGCCTGCAGCGAT
CACCAGCACGGGCAGCGGCAGTGGCAGCGGCGGCAACAGTGGTGGAGGCA
GCGGCAGCATCGGCAGCTGCCGCAGCAGTGCTAGCAGCAAAAGAGGACGC
CAGCCTCCGAGCCACCAGCAGCTGCTGCAGCGCAGCGCCACGGCAGCACG
CGGCGGTGGCGGCGGCGGCGGCGGCGCGGCAGCAGCAGCGGCAGTGCAGC
GCGCGGCGGCACGCGTGCAGCGCGCTGTGCGGCGCTGGCTCATGCGCACG
CGCGCCGCGGCAGCGCTCTGCATCGCGCGCCTCGCCTCCGCCAACGCCAC
GCTCGCGCTCGAGCGCGACCTGCTGCGCGCGCAGCTGGCGGCGGCGCGGT
GCGGCGCGCGCACGGCGCAGCGCGCGGCGGTTACGGATGAAACCGCCGCG
GCGGCGGCGGCGCGCCGCGCGGCCGAGGCCGTGCGAGCGGCTCTTGCTGC
CGCCAAGGAGCAGTGGGAGAGCGAGAGGAAAGCGCTGCTGGAGAGGTTAA
GGGCGGCGCAGGCGGCGGCGGCGGCGGCAGGCGCTGCTGCGGAGGCCGCG
AAGAAGCGCGTGGCGGCGGTGGAGCGGCGGTACGGCGCGCGGAGCGCTGC
TGCGGAGGGTTTGGCGCGCAAGCGCGGCGCGGCAGCTCGCCCGCTGCGCC
ACATCAAATCGACTCGGCCGCTGCTGGCGTAGGAGCGCAGCAGCTGGCCA
GATACCAAAGTAGTTAACTTGCAAGTGTCGGGGTGCCTTGTGGTGTGTGT
GGAGCGCGATGTATGCGCTTGTGCATAGGACGATGGATGTGTCTGGTAAT
GACTCTGCCTCTGCCGCGATGAACAGCAGAGCGCCTGGGGATCGCAAATG
CGATGGCGCTAGGGCTTCATGGCGTCCCTACCAAGGGCTACGCG

protein sequence of jgi.p|Trimin1|348943

>Trimin1|348943|estExt_Genemark1.C_Ctg_330049 ID=Trimin1|348943|estExt_Genemark1.C_Ctg_330049|Name=jgi.p|Trimin1|348943|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=344bp
MASLSLHLTDGDVDAVVCIAGAAPQGTVSRDMFATLLSSSRPPSPHHPEA
ALAAAAAAPSPDEALRLSDASLGRNFGGLAAGIKDRLLGLMASGSLDLSD
TLHSLAPSSDSPQPAAITSTGSGSGSGGNSGGGSGSIGSCRSSASSKRGR
QPPSHQQLLQRSATAARGGGGGGGGAAAAAAVQRAAARVQRAVRRWLMRT
RAAAALCIARLASANATLALERDLLRAQLAAARCGARTAQRAAVTDETAA
AAAARRAAEAVRAALAAAKEQWESERKALLERLRAAQAAAAAAGAAAEAA
KKRVAAVERRYGARSAAAEGLARKRGAAARPLRHIKSTRPLLA*

mRNA from alignment at Contig_33:329119..332525-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5937 ID=mRNA_5937|Name=jgi.p|Trimin1|348943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3407bp|location=Sequence derived from alignment at Contig_33:329119..332525- (Tribonema minus UTEX_B_3156 )
ATGGCGTCATTAAGGTAGGTGGTCTATCACTTGAGGAGGCCTAAGGGGCC
GTGAAACTCAATGTTGTCGCTCGAAATGCAGTCGCTGAAGTGGTATTCGG
AAGGATCCGACCCCGGCTCACCTTGAGGGATTGCAACGCGAGCATTGCCT
GACAGCCTGCGTACAGCACCCATGTGCTTACTGCATCAGCGCGTTAAACG
CTGAATGTCACAGACATGTTCGTTTGGTTCAAGCTTTCATCTACAGCCTT
CGTTGCTGACCGTGTGCCAGCGACTCTCAGCTCCTGAGTCTACATTTGAG
GGGATTGTTCTTGCAGTAGCGCTGAACAAACCACCAGTGACGTAAAGACC
TGTCTGTTCCTGTGCAGCACACAATCTGCATGACATGCGCACTAGAACAA
CATTGCATTCCCACTAGAATTGAATAGCCAGCAGCGTTACTTTCATCAGC
TGATGCCAGAGACGACAGGATTGTTCGTGCTCGGCACAACAACCTCTTTT
CAAGTCCTCATTGCTGACGCTGGCTTTTCTCATGTGTATGCGTGTCTTCA
GTCTGCATCTGACAGATGGGGACGTCGATGCGGTAGTGTGCATAGCGGGG
GCTGCGCCGCAGGGCACTGTCAGCCGCGACATGTTTGCAACACTGCTCAG
CAGCAGCCGACCGCCGTCACCACACCACCCTGAAGCAGCACTAGCAGCAG
CAGCAGCAGCACCATCGCCTGACGAAGCACTGCGGCTATCGGACGCGAGC
CTGGGACGCAATTTTGGCGGGCTGGCAGCGGGGATCAAGGATCGGCTGTT
GGGACTCATGGCCTCAGGTGCGTGGTGAAGTTGCAGATCTCCTAGTACGC
TTTGGGCAGGCTCGTTTGTTCCCGTGGTGGCGAGGACAGAAGATGACCTT
GCCTCATGTTTGGTGTTGGTGCACTGTTGTTGTACCGTAACACCAGTGGT
CCAGTGGTGATATAGCGCGCATCTTGCTAGCTTGGTGACGTAGCAGTAGC
GTCAGGGTTAGGGTTAGGGTAAGGGTGAACGGACGAAGATGCCTCCCGGG
GGCCCGCTCTCGCCCTTCTCTCACACACGTCCTATTGCACTGCGTTGCAG
GCAGCCTGGACTTGAGCGACACGCTGCACTCCCTTGCGCCAAGCAGTGAC
TCTCCGCAGCCTGCAGCGATCACCAGCACGGGCAGCGGCAGTGGCAGCGG
CGGCAACAGTGGTGGAGGCAGCGGCAGCATCGGCAGCTGCCGCAGCAGTG
CTAGCAGCAAAAGAGGACGCCAGCCTCCGTCAGTGCCAATTCAGCAACGG
CGGCAGTCGCAGTGTGGGGGCCCTAGCCCTAGCCCTAGCCCTAGCCCTGT
TGCTGGTCCTGCTTTGGCGACAGGTGCCAATCTGCTGTTACATGTGAACG
AGGTACCAGCGCTCGCAGCTGCCAAGGCTGCAGCTGTGAGTGATGTCTCA
TTTTCCAGTACCAGCAGCAGCAACAGCAGTCGCAGCAGCAGCAGCAGCAG
CAATGACAGCGACGATGGCCAAGCCATGCTGTGCGCAGAGCAGCTACAGC
CGTGGAAGGAGGCGGTATCACAACCTTTTCCAAAAAGGTCAAACGCAGCC
CAAGCAGACGATTCTGCCATTCTCAGCACTGCGGCCACGAAGGCCAAGCA
ACCCCCCAGGACCAGTGCACTCAATACTTCCAGAGGGGGATATACCCCCC
GCTCTTCACACATCAACTATACCAAAGTCACTCGTGACAAACGCTCGCAC
GCAAGGAGCCACCAGCAGCTGCTGCAGCGCAGCGCCACGGCAGCACGCGG
CGGTGGCGGCGGCGGCGGCGGCGCGGCAGCAGCAGCGGCAGTGCAGCGCG
CGGCGGCACGCGTGCAGCGCGCTGTGCGGCGCTGGCTCATGCGCACGCGC
GCCGCGGCAGCGCTCTGCATCGCGCGCCTCGCCTCCGCCAACGCCACGCT
CGCGCTCGAGCGCGACCTGCTGCGCGCGCAGCTGGCGGCGGCGCGGTGCG
GCGCGCGCACGGCGCAGCGCGCGGCGGTTACGGATGAAACCGCCGCGGCG
GCGGCGGCGCGCCGCGCGGCCGAGGCCGTGCGAGCGGCTCTTGCTGCCGC
CAAGGAGCAGTGGGAGAGCGAGAGGAAAGCGCTGCTGGAGAGGTTAAGGG
CGGCGCAGGCGGCGGCGGCGGCGGCAGGCGCTGCTGCGGAGGCCGCGAAG
AAGCGCGTGGCGGCGGTGGAGCGGCGGTACGGCGCGCGGAGCGCTGCTGC
GGAGGGTTTGGCGCGCAAGCGCGGCGCGGCAGCGTCAGTGCCTTCTGATA
AGCGTGCTGTCAGCGCGCCTTCCGGTGTTCAAGTCAATGTTCAACTCAAT
CAGCAGCGCGGTGCTGAAGCAGGTGGTCACAGCGGTGGCGTGGATGCTGC
CAAGAAGGACTCACGAGTCGCGCTGCTGCGGCGTCAGCAGCGTGATGATG
GGCACTCAGTGCTCAGGCTGGAGCGTGAACTTGCAGAGTGCCACGAGCAG
CTAGTGTCTGTGAAGGCGCAGCTTCGGGAAACGCAGCAAGCTGCAGCACA
GGCATTTGCTGCAAAAGAAGAGGCAGTGCTGCGCACGAAGCAGCTGCAAA
GTGAAGTGGGCATCGGCAAGGGGCAGGTTGCAGGTGTAGGGGGTTGGCTC
AGGGAATTGGAGATTAGGAAGCTCCGGGCTGAAATGGCCGGTTACATTGG
ACATATGGAGACATTGGGCTGCAGGCAATAGCCACACCCTCTTTGGAATA
ATGAGGAATGATGCATGCATAATTACAAGCCGATTGGGCTGCAGTGCACG
TGGCCCCTTGGCATATAGCCCAAACATTGATATAACAACATTTCATGGCC
TCTGCACTCGTGCCATTGCAGCTGAGAGCGCCATGTCATTCACGCGGATC
GCCCGTCTACTCAGTCTACTTGAAGAGATGCTTGAACACGCATTGACAGT
CAGCACTTTGTAGGATGCCACATGCTCACAGCACCAAACACCATCAGCGA
CGAAGCATAGCAAGGCTGCAACTCTGATCGTCTGTGGGTATGCAACTGCA
TTGGCCATGTCATTTGCGGAGAGAGTACCCAATGCAGTATATATGATGGC
CCCCCACACACATGAGCCTCCTGGGGTGTGCCGCTCGTAAAGTGCACAGT
CGCCCGCTGCGCCACATCAAATCGACTCGGCCGCTGCTGGCGTAGGAGCG
CAGCAGCTGGCCAGATACCAAAGTAGTTAACTTGCAAGTGTCGGGGTGCC
TTGTGGTGTGTGTGGAGCGCGATGTATGCGCTTGTGCATAGGACGATGGA
TGTGTCTGGTAATGACTCTGCCTCTGCCGCGATGAACAGCAGAGCGCCTG
GGGATCGCAAATGCGATGGCGCTAGGGCTTCATGGCGTCCCTACCAAGGG
CTACGCG

Coding sequence (CDS) from alignment at Contig_33:329119..332525-

>mRNA_5937 ID=mRNA_5937|Name=jgi.p|Trimin1|348943|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1032bp|location=Sequence derived from alignment at Contig_33:329119..332525- (Tribonema minus UTEX_B_3156 )
ATGGCGTCATTAAGTCTGCATCTGACAGATGGGGACGTCGATGCGGTAGT
GTGCATAGCGGGGGCTGCGCCGCAGGGCACTGTCAGCCGCGACATGTTTG
CAACACTGCTCAGCAGCAGCCGACCGCCGTCACCACACCACCCTGAAGCA
GCACTAGCAGCAGCAGCAGCAGCACCATCGCCTGACGAAGCACTGCGGCT
ATCGGACGCGAGCCTGGGACGCAATTTTGGCGGGCTGGCAGCGGGGATCA
AGGATCGGCTGTTGGGACTCATGGCCTCAGGCAGCCTGGACTTGAGCGAC
ACGCTGCACTCCCTTGCGCCAAGCAGTGACTCTCCGCAGCCTGCAGCGAT
CACCAGCACGGGCAGCGGCAGTGGCAGCGGCGGCAACAGTGGTGGAGGCA
GCGGCAGCATCGGCAGCTGCCGCAGCAGTGCTAGCAGCAAAAGAGGACGC
CAGCCTCCGAGCCACCAGCAGCTGCTGCAGCGCAGCGCCACGGCAGCACG
CGGCGGTGGCGGCGGCGGCGGCGGCGCGGCAGCAGCAGCGGCAGTGCAGC
GCGCGGCGGCACGCGTGCAGCGCGCTGTGCGGCGCTGGCTCATGCGCACG
CGCGCCGCGGCAGCGCTCTGCATCGCGCGCCTCGCCTCCGCCAACGCCAC
GCTCGCGCTCGAGCGCGACCTGCTGCGCGCGCAGCTGGCGGCGGCGCGGT
GCGGCGCGCGCACGGCGCAGCGCGCGGCGGTTACGGATGAAACCGCCGCG
GCGGCGGCGGCGCGCCGCGCGGCCGAGGCCGTGCGAGCGGCTCTTGCTGC
CGCCAAGGAGCAGTGGGAGAGCGAGAGGAAAGCGCTGCTGGAGAGGTTAA
GGGCGGCGCAGGCGGCGGCGGCGGCGGCAGGCGCTGCTGCGGAGGCCGCG
AAGAAGCGCGTGGCGGCGGTGGAGCGGCGGTACGGCGCGCGGAGCGCTGC
TGCGGAGGGTTTGGCGCGCAAGCGCGGCGCGGCAGCTCGCCCGCTGCGCC
ACATCAAATCGACTCGGCCGCTGCTGGCGTAG