mRNA_5935 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348941
Unique NamemRNA_5935
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A836CE13_9STRA (Ketopantoate reductase PanE/ApbA C terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE13_9STRA)

HSP 1 Score: 598 bits (1543), Expect = 4.380e-215
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 1
Query:    1 MGGGHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGLCDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIGKLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLSEQLELARAAVQARMSKVEAQSRGAGCSSGACVEQA 915
            MGGGHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGLCDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIGKLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLSEQLELARAAVQARMSKVEAQSRGAGCSSGACVEQA
Sbjct:    1 MGGGHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGLCDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIGKLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLSEQLELARAAVQARMSKVEAQSRGAGCSSGACVEQA 305          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A2N2LCU3_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-9 TaxID=2013732 RepID=A0A2N2LCU3_9CHLR)

HSP 1 Score: 234 bits (597), Expect = 1.890e-71
Identity = 130/288 (45.14%), Postives = 171/288 (59.38%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIGKL-------SGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLSEQLELARAAVQAR 849
            GH+V FLLR DY A   HGL ++S DGD  +  D+P +  ++  + PVDW++  LKA A++ AR+L  PC G  TRVLA+ NGL  ++ +A  FGR R FG +A+ C+ R  P VIHH+ YG L IG L       + A  LW  S+V V   P L  ARW KL +NIPF+G++V  GGVT D+I  +P  RAAA R M E  A GNADL AH     +P  ++ +M   TD    Y PS  +D + G+P+E+E +   PL RA ALGVP P+L     L R    AR
Sbjct:   24 GHEVHFLLRRDYDAVAAHGLEVRSKDGDFRV--DAPHIHRSSAEIGPVDWVICALKATAIEAARDLIAPCLGPKTRVLALMNGLGIEEQMAGWFGRARMFGGLAFTCINRGEPGVIHHIDYGALAIGHLDDDPAEVAAACALWDGSKVTVSPAPTLREARWRKLCWNIPFNGLAVTAGGVTTDVIMHNPDLRAAAERSMREVVAAGNADLEAHHAPIRLPVDIVEQMMATTDAMAVYRPSTMIDFVDGQPLEVEAIFGEPLRRARALGVPVPSLELLTALMRTLDPAR 309          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A7S1IDQ7_9EUGL (Hypothetical protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IDQ7_9EUGL)

HSP 1 Score: 219 bits (559), Expect = 2.770e-65
Identity = 127/279 (45.52%), Postives = 167/279 (59.86%), Query Frame = 1
Query:   10 GHDVTFLLRS-DYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGLCDDDLALVFGRERT-FGAIAYVCVTRAAPAVIHHLHYGDLLIG----------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAH--GVEGE-MPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAP 801
            GHDV F +R  +      +GL ++S  GDM++P    +  S T+ +  VDW+VLGLK+ AL+    L  PC G H+RVLAI NG  DD L  +    R+ FG +A++CV R +P VIHH  YG LL G          +L     LW+ ++V    TP LLR RWEK  +NIPFSG+SVAMGG+T+D I  D   R  A ++M E  A+ NADL AH  G + E +  A + KMWD +D  G Y PS  +DLLAG+P+E+E+L   PL RA ALGV  P
Sbjct:   51 GHDVRFFMRGPNLDTCHVNGLTVQSIAGDMHIPASELQTFSNTKDIGEVDWVVLGLKSTALQVVPALVRPCLGQHSRVLAIMNGFVDDQLVDLLPEARSVFGGMAFICVNRISPGVIHHSFYGPLLGGLARVDPNQQHELELLEQLWQPTKVPFTTTPTLLRGRWEKSAWNIPFSGLSVAMGGITIDQIVGDQGLRKLAKQIMCEVVAVANADLQAHCGGDDWEPLGEAHMTKMWDLSDNMGPYRPSTMIDLLAGKPIEVEYLFSQPLQRAWALGVEVP 329          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A2E5LYP3_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E5LYP3_9CHLR)

HSP 1 Score: 217 bits (552), Expect = 1.020e-64
Identity = 122/278 (43.88%), Postives = 165/278 (59.35%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHG----VEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTL 807
            GHDV FLLR DY A    GL ++S  GD Y+  +SP +   +  + PVDW++  LKA +L  A  L  PC G  TRVLAI NGL  +++LA V  RE  FG +A+ C+ R  P VIHH  YG ++IG       +L  A  LW+ + V V   P LLRARWEKL +N+PF+G++VA GG+T ++I  D + R  A  +MEE    GNADLAA      ++GE    ++ +M+  TD  G Y PS  +D L GR +E++ +   P+ RA ALGV  P L
Sbjct:   24 GHDVHFLLRRDYEAVAKQGLRIESHHGDFYI--ESPTISRDSSAIGPVDWVLCALKATSLGEASALVRPCLGPETRVLAIVNGLGIEEELARVLDRENIFGGLAFTCINRGEPGVIHHYDYGQVVIGHLGDDPVELERALALWQGATVEVSRAPSLLRARWEKLCWNVPFNGLTVAEGGITTELIVTDSTLRKEACALMEEVVKAGNADLAARDNPERIDGEE---VITRMFTLTDAMGPYRPSTLIDFLEGRRIEVDAIFGEPVRRARALGVETPRL 296          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A6L8E7H1_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L8E7H1_9CHLR)

HSP 1 Score: 216 bits (551), Expect = 3.980e-64
Identity = 126/286 (44.06%), Postives = 170/286 (59.44%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHG----VEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLSEQLELAR 831
            GHDV FLLR DY A ++ GL ++S DGD++L    P   +T+E + PVDW+V  LKA +L     L  PC    TRVL + NGL  ++  +  FG  R FGA+A+ C+ R  P V++HL YG + IG       +LS A  LW  ++V V   P LLRARWEKL +NIPF+G+++A GGV  D +  D + R  A  +MEE   +GNA+LA  G    ++GE   A++ +M+  TD  GAY PS  +D L GR +E+E +   PL RA ALG PAP L     L R
Sbjct:   39 GHDVRFLLRRDYEAVRSGGLRVRSVDGDLHLA--RPFAAATSEEIGPVDWVVCALKATSLDAVPALLQPCLQETTRVLVLMNGLGLEERFSDWFGARRVFGALAFTCINRGEPGVVNHLRYGPITIGHAEDDPAELSAAARLWAGAKVEVSTAPSLLRARWEKLCWNIPFNGLTIAAGGVATDRVVGDAALRREARALMEEVVRLGNAELARSGEAARIDGE---AVIERMFAMTDVMGAYRPSTLIDYLEGRALEVEAIFGEPLRRAHALGEPAPRLELMTALLR 319          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A6L7WHA2_9CHLR (2-dehydropantoate 2-reductase n=4 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WHA2_9CHLR)

HSP 1 Score: 214 bits (546), Expect = 1.320e-63
Identity = 122/278 (43.88%), Postives = 160/278 (57.55%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPA----ALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTL 807
            GHDV FLLR DY A    GL ++S  GD  L  + P +      + PVDW++ GLK  AL  A  L  PC    TRVLAI NGL  ++ LA   G  R FG +A+ C+ R  P VIHH+ YG + I        +L  A  LW+D+ V +   P LLRARWEKL +N+PF+G++VA GGV  ++I  DP+ RA A  +MEE  A GNADLAA G  G        A++ +M++ TD  G Y PS  +D L GR +E++ +   P  RA  LGVP P +
Sbjct:   30 GHDVRFLLRRDYDAVAARGLRIESHHGDFTL--ERPAIARDAAAIGPVDWVLCGLKTTALDDAAALIRPCLTPETRVLAIMNGLGVEESLAGSLGTGRVFGGLAFTCINRGEPGVIHHIEYGQVGIAHLGDDPAELDRALALWQDATVEITRQPSLLRARWEKLCWNVPFNGLTVAAGGVDTEVIVTDPALRAEARALMEEVVAAGNADLAAAGAAGAAERIDGEAVISRMFELTDVMGPYRPSTLIDYLEGRAIEVDAIFAEPARRARDLGVPTPRM 305          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A6B1GI94_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1GI94_9CHLR)

HSP 1 Score: 213 bits (543), Expect = 2.950e-63
Identity = 123/278 (44.24%), Postives = 162/278 (58.27%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIGKLSGARD-------LWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHG----VEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTL 807
            GHDV FLLR DY A    GL ++S  GD  L    P +      + PVDW++ GLK+ AL  A  L  PC    TRVLAI NGL  ++ LA   G ER FG +A+ C+ R  P V+HH+ YG + I  L    D       LW+D+ V V   P LLRARWEKL +N+PF+G++VA GGV  ++I  +P+ RA A  +MEE  A GNADLAA G    ++GE   A++ +M+  TD  G Y PS  +D L GR +E++ +   P  RA  LGVP P +
Sbjct:   30 GHDVRFLLRRDYDAVAERGLRIESHHGDFAL--QHPTIARDPVAIGPVDWVLCGLKSTALAEAAALIRPCLTPGTRVLAIMNGLGIEERLAASLGAERVFGGLAFTCINRGEPGVVHHIEYGQIGIAHLRDDPDELDRALALWQDATVEVTRQPSLLRARWEKLCWNVPFNGLTVAAGGVDTEVIVSNPALRAEARALMEEVVAAGNADLAAAGSPERIDGE---AVITRMFTLTDVMGPYRPSTLIDYLEGRAIEVDAIFAEPARRARYLGVPTPRM 302          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A6L7YEQ0_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7YEQ0_9CHLR)

HSP 1 Score: 213 bits (542), Expect = 3.490e-63
Identity = 123/278 (44.24%), Postives = 163/278 (58.63%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHG----VEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTL 807
            GHDV FLLR DY A    GL ++S  GD  L  + P +      + PVDW++ GLK  AL+ A  L  PC    TRVLAI NGL  ++ LA   G ER FG +A+ C+ R  P VIHH+ YG + I        +L  A  LW+D+ V V   P LLRARWEKL +N+PF+G++VA GGV  + I  DP+ RAAA  +MEE  A GNADLAA      ++G+   A++ +M+  TD  G Y PS  +D L GR +E++ +   P+ RA  LGV  P +
Sbjct:   24 GHDVRFLLRRDYDAVAERGLRIESHHGDFAL--ERPAIARDPAAIGPVDWVLCGLKTTALEDAAALIRPCLAPATRVLAIMNGLGIEERLAASLGTERVFGGLAFTCINRGEPGVIHHIEYGQVGIAHVGDDPAELDRALALWQDATVEVTRQPSLLRARWEKLCWNVPFNGLTVAAGGVDTEAIVTDPALRAAARALMEEVVAAGNADLAAAASPERIDGD---AVIARMFTLTDAMGPYRPSTLIDYLEGRAIEVDAIFAEPVRRARDLGVATPRM 296          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A521Y453_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521Y453_9CHLR)

HSP 1 Score: 214 bits (545), Expect = 4.140e-63
Identity = 115/276 (41.67%), Postives = 161/276 (58.33%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHGVEGEMPAALLGK-MWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALGVPAPTLS 810
            GH+V FL+R DY A +  GL++ S DGD+Y+    P +      + PVDW++  LKA A++ AR L  PC G  TR+L + NGL  +D  A+ FG ER FG +A+ C+ R  P V+HH+ YG + +G       +L  A  LW  ++V       LL  RW KL +NIPF+G++V  GG+T D I  DPS RAA + ++ E  A GNADL AHG    +  A + + M   T+   AY PS  +D + G+P+E+E + E PL RA+A  V  P LS
Sbjct:   68 GHEVHFLMRRDYEAVQARGLSIVSKDGDLYIA--HPHIARDASAIGPVDWVICALKATAIEEARALVAPCVGASTRILVLMNGLGLEDRFAVWFGAERIFGGLAFTCINRGEPGVVHHIDYGPVTVGHLKDDPAELDTALALWSGAKVETARAESLLAGRWTKLCWNIPFNGLAVTAGGITTDRILADPSLRAAVSALILEVAAAGNADLDAHGSPARLDGAAVARSMVAATEAMAAYRPSTMIDFVEGQPMEVEAIFEEPLRRASAHRVATPLLS 341          
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Match: A0A6I4Z7D9_9CHLR (2-dehydropantoate 2-reductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4Z7D9_9CHLR)

HSP 1 Score: 207 bits (527), Expect = 4.420e-61
Identity = 117/272 (43.01%), Postives = 157/272 (57.72%), Query Frame = 1
Query:   10 GHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQPVDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGL-CDDDLALVFGRERTFGAIAYVCVTRAAPAVIHHLHYGDLLIG-------KLSGARDLWRDSRVGVEVTPCLLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAIGNADLAAHG----VEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEHLLEVPLARAAALG 789
            GHDV FLLR DY A    GL ++S  GD  L  D P +      + PVDW++ GLK  +   A  L  PC G  TRVLAI NGL  ++ LA   G ER FG +A+ C+ R  P V+HH  YG + I        +L  A  LW+D+ V V   P +LRARWEKL +N+PF+G++VA G VT + I  DP+ RA A  +MEE  A GNADLA+      ++GE   A++ +M+  TD  G Y PS  +D + GR +E++ +   P+ RA  LG
Sbjct:   24 GHDVRFLLRRDYEAVAERGLRIESHHGDFAL--DHPTIARDPAEIGPVDWILCGLKTTSFDEAPGLIRPCLGPETRVLAIVNGLGIEERLAAALGTERIFGGLAFTCINRGEPGVVHHYEYGQVSIAHLGDDPAELDRALVLWKDATVEVSTAPSVLRARWEKLCWNVPFNGLTVAAGAVTTEAIVTDPALRAEARALMEEVVAAGNADLASRNSPERIDGE---AVITRMFALTDVMGPYRPSTLIDFVEGRAIEVDAIFAEPVRRARDLG 290          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348941 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE13_9STRA4.380e-215100.00Ketopantoate reductase PanE/ApbA C terminal-domain... [more]
A0A2N2LCU3_9CHLR1.890e-7145.142-dehydropantoate 2-reductase n=1 Tax=Chloroflexi ... [more]
A0A7S1IDQ7_9EUGL2.770e-6545.52Hypothetical protein n=2 Tax=Eutreptiella gymnasti... [more]
A0A2E5LYP3_9CHLR1.020e-6443.882-dehydropantoate 2-reductase n=1 Tax=Dehalococcoi... [more]
A0A6L8E7H1_9CHLR3.980e-6444.062-dehydropantoate 2-reductase n=1 Tax=Chloroflexi ... [more]
A0A6L7WHA2_9CHLR1.320e-6343.882-dehydropantoate 2-reductase n=4 Tax=Chloroflexi ... [more]
A0A6B1GI94_9CHLR2.950e-6344.242-dehydropantoate 2-reductase n=1 Tax=Chloroflexi ... [more]
A0A6L7YEQ0_9CHLR3.490e-6344.242-dehydropantoate 2-reductase n=1 Tax=Chloroflexi ... [more]
A0A521Y453_9CHLR4.140e-6341.672-dehydropantoate 2-reductase n=1 Tax=Dehalococcoi... [more]
A0A6I4Z7D9_9CHLR4.420e-6143.012-dehydropantoate 2-reductase n=1 Tax=Dehalococcoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:320019..323433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348941|estExt_Genemark1.C_Ctg_330047
DescriptionKetopantoate reductase PanE/ApbA C terminal
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1893@1|root,2S4KJ@2759|Eukaryota
Evalue2.72e-50
Seed ortholog55529.EKX32678
Hectar predicted targeting categoryother localisation
TranscriptId349263
TrackFilteredModels1
ProteinId348941
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348941gene_5935Tribonema minus UTEX_B_3156 geneContig_33 320019..323433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348941Trimin1|348941|estExt_Genemark1.C_Ctg_330047Tribonema minus UTEX_B_3156 polypeptideContig_33 320191..323433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5935_4exon_5935_4Tribonema minus UTEX_B_3156 exonContig_33 320019..320403 -
exon_5935_3exon_5935_3Tribonema minus UTEX_B_3156 exonContig_33 321928..322242 -
exon_5935_2exon_5935_2Tribonema minus UTEX_B_3156 exonContig_33 322498..322877 -
exon_5935_1exon_5935_1Tribonema minus UTEX_B_3156 exonContig_33 323424..323433 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5935UTR3_5935Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 320019..320190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5935CDS_5935Tribonema minus UTEX_B_3156 CDSContig_33 323424..323433 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Trimin1|348941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1090bp|location=Sequence derived from alignment at Contig_33:320019..323433- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGGGCATGACGTCACCTTCCTGCTGCGCAGCGACTACGCCGC
TGCCAAAACGCACGGCCTCGCGCTCAAATCCGCAGACGGCGACATGTACC
TACCCCCCGACTCGCCGCGGCTGCGCAGCACCACAGAGGGCATGCAGCCC
GTAGACTGGCTCGTGCTGGGCCTGAAAGCGTACGCGCTCAAACACGCTAG
GGAGCTCGCGGGACCGTGCTACGGCGTGCACACGCGCGTGCTGGCCATCA
CCAACGGCCTGTGCGACGACGATCTGGCCCTCGTATTTGGCAGGGAGCGC
ACGTTTGGAGCGATAGCGTATGTATGCGTGACGCGCGCCGCGCCCGCAGT
CATCCACCACCTGCACTACGGGGACCTGCTCATAGGCAAGCTGAGCGGCG
CGCGCGACTTGTGGCGCGACTCGCGAGTCGGAGTGGAAGTCACGCCGTGC
CTCCTGCGCGCGCGCTGGGAGAAGCTCCTGTACAACATACCGTTCTCGGG
CATGAGCGTCGCGATGGGGGGCGTAACTGTCGACATCATTGCGAAGGACC
CTAGCGCGCGCGCGGCGGCGACGCGTATGATGGAGGAGGCGCGCGCGATA
GGCAACGCGGACCTGGCGGCGCACGGCGTTGAAGGGGAGATGCCCGCAGC
GCTGCTCGGCAAGATGTGGGACTACACGGACAGGGCCGGCGCATACCTTC
CATCGGCATCGGTGGACCTGCTAGCTGGCCGGCCGGTGGAACTTGAACAT
CTGCTTGAAGTTCCGCTGGCGCGGGCCGCCGCGCTGGGGGTACCCGCGCC
AACGCTCAGCGAGCAGTTGGAGCTAGCGCGCGCTGCTGTTCAGGCGCGCA
TGTCAAAAGTAGAAGCACAATCACGAGGCGCAGGTTGCAGCTCGGGCGCA
TGCGTCGAACAGGCATGAGCAGCGATGATTCCATAGAGCTGCGCGCATGT
GTACAGGGGTATGTATGGTATACGAGTATCACAGACTGGCAGGGGCACAT
ATACTCCTGGGTACAAAGGAATGCCCGCTTGTGAAGGAGTGTTACCTTAG
AGTATAATACATGCATGTACGCGGTGCTGCTGCAATGTCG
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protein sequence of jgi.p|Trimin1|348941

>Trimin1|348941|estExt_Genemark1.C_Ctg_330047 ID=Trimin1|348941|estExt_Genemark1.C_Ctg_330047|Name=jgi.p|Trimin1|348941|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
MGGGHDVTFLLRSDYAAAKTHGLALKSADGDMYLPPDSPRLRSTTEGMQP
VDWLVLGLKAYALKHARELAGPCYGVHTRVLAITNGLCDDDLALVFGRER
TFGAIAYVCVTRAAPAVIHHLHYGDLLIGKLSGARDLWRDSRVGVEVTPC
LLRARWEKLLYNIPFSGMSVAMGGVTVDIIAKDPSARAAATRMMEEARAI
GNADLAAHGVEGEMPAALLGKMWDYTDRAGAYLPSASVDLLAGRPVELEH
LLEVPLARAAALGVPAPTLSEQLELARAAVQARMSKVEAQSRGAGCSSGA
CVEQA*
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mRNA from alignment at Contig_33:320019..323433-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Trimin1|348941|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3415bp|location=Sequence derived from alignment at Contig_33:320019..323433- (Tribonema minus UTEX_B_3156 )
ATGGGCGGAGGTGCTGAAGGCAGCAGCGGCGGCACGGACAGCCGTTGCTC TGTGCTTGTAATCGGAACTGGCGCCGTTGGATGTCTATATGGGGCCAGGC TACTGGAAGCAGGCAAGCGCTGGAACCTGCTGATTAAGCACTCGCTGCAG CGCATGGTGCATGGGCGATCAGGACTGCAATGCGCAGCAAACCGTATGTG AAGAATGCTGTGGCACTTCACTCTACAGTACCCCTGTGAGGGGTATGTCT GACAGAATGGGCATCGGATGCATTCAGTCAAATGTGAGGCATATGTACAT GAACCTGGCTCCATGCTGAGGTACGGCAACTCAGCAGAGTAGCTTTTCGC AGACACTCGCAAATCCTGTGTGCTCCAGAGACGCCTTTTGAGCCCCTGTG TACACAGTCCTTGAAGAAAGTTCATGCCTCCAGGGAGGGTCCACAGCCCT GCATGTGGCAGACGCAGCGGCACCTCGATGCCATTGCAAACCGCGTGCAT CCCCAGCTTACAATCTCTCTCGCGCTCTCGACACCCCTCCCCTGCTCCGT CCTCAGGGCATGACGTCACCTTCCTGCTGCGCAGCGACTACGCCGCTGCC AAAACGCACGGCCTCGCGCTCAAATCCGCAGACGGCGACATGTACCTACC CCCCGACTCGCCGCGGCTGCGCAGCACCACAGAGGGCATGCAGCCCGTAG ACTGGCTCGTGCTGGGCCTGAAAGCGTACGCGCTCAAACACGCTAGGGAG CTCGCGGGACCGTGCTACGGCGTGCACACGCGCGTGCTGGCCATCACCAA CGGCCTGTGCGACGACGATCTGGCCCTCGTATTTGGCAGGGAGCGCACGT TTGGAGCGATAGCGTATGTATGCGTGACGCGCGCCGCGCCCGCAGTCATC CACCACCTGCACTACGGGGACCTGCTCATAGGCAAGGTTGCACAAAAGCG TATTTTGAAGTTTATTTCTGAGTGGCAGTGCCCCTTTCGTGATGGACTGC ATGCTCGGAACCGAGCAGACTCACGACATGCCCCTCAAATACGCCCTTCG CGCAGCACGTCATCGTGTCGAGGTTGCTCAAGATGTATTTATGGTTGCCG AACACGCCCCACATGACGCCGTATCTGTGTAGTCAAATACGTTGTTTGTG CAACCCTACTCATAGGGCACCTGGGCGGCGATGCGGCGCAGCTGAGCGGC GCGCGCGACTTGTGGCGCGACTCGCGAGTCGGAGTGGAAGTCACGCCGTG CCTCCTGCGCGCGCGCTGGGAGAAGCTCCTGTACAACATACCGTTCTCGG GCATGAGCGTCGCGATGGGGGGCGTAACTGTCGACATCATTGCGAAGGAC CCTAGCGCGCGCGCGGCGGCGACGCGTATGATGGAGGAGGCGCGCGCGAT AGGCAACGCGGACCTGGCGGCGCACGGCGTTGAAGGGGAGATGCCCGCAG CGCTGCTCGGCAAGATGTGGGACTACACGGACAGGGCCGGCGCATACCTT CCATCGGTGAGTATGTATAGCTTGATACTTTGAAGTGGTTTGGTACATTG TTTTGTCTACTTGAATGGGGTAAGTAGGTAGTAGTGTCCGCAGCTGAGCG CTGTGGGGGAGATGCCTGCAGCGCTGCTCAGCAAGATGTCAGCAAGATGT GGGACTACACGGAAAGGGTGGGCGGGTACCTCCCGTCGGCGAGGGTTTAG CTTGATGCTTGTGTTTGTGTCTGTTCCCCTAACCCAACCCTGACCCAACC CTGACCCTAGCTTTTAAAGTGGTTTGTTCATGTGTTTTGATGGGTATGTA GGTAGTGGGTGCAGCTGAGCCTTATATAGTTGGGAGAAGCAACGCTCAGC GCGTCGGCGTGGGCTGCATGGCATCTTGCATACCGCATGACGTTTATGTC AGTACCTACTGTGGTGGGTGGATAAGGTTAACTCAGCGCTTATCGCTGGC TTTGCGTTTACGATCACATCTGGCTGTGCTGGCGCTGCAATGCCAATGTG TAGGTGTGCGCGCGTATACATACGGCAGTGGTTGGCCTGTCAGCTATGTG ATGTACATGCTCTCTGTGCAATGGCGGTGCAGCCCCCCCCCCCCTAAACC CTTGCCACAGCAACTCTCGATGCACGAGATGTGGTGCTCTGGTGGTGTTG GCTGTAGCCACGCATTGCGCAGGACGACCGAGACTAGGATTCAAACGAAC CCTAGGCTAAGGGTCAGGCATCATCGATGTCGCATGCAGGGTGACCATCA TTCTGGGGAAGGCACTTGCTGACTTGAAGTGCAAGCTGCTCGTGCTGTTG CAGTAGTTTGGCAGGCGCGGAGCTTGCAACGCCGTACCCAGAAACATGGA CGGGCAGCTCAGAGTGTGTACATGTCGCTAATGAAGGGTAGGGTTAGGGT GCAGTTTAACCTAACCCTAACCCTAAGGTCAATGAAGGGGACTGTGCTGT CTGCCTCGGTGGCAGCCGCACTGGTGTGTTTTTTGCTTGGTTCATACAAC AGGTGCCGCAGCAAGGGCTGACTTTGGTAACAGCAATTAGAAGTTGGGAT GCTACAGAACTGTTCGAATGTCATGCTCAGAGCACTGGTATGCCTGCATG ATCAGTTTCTTCAGGTCCTTGAGAAGTATGATGAGCCAACACTCCACGCG TCCGTCTGGCCCACGTGTTTGTCCAAAACTGTTTAGACGCGCTGTTCAAC AATTGCAGCGGAAGCGGTAGTGGCAGCTTGTGTTGCCATGATGACTGTCG CCAACCACTGACAGCCCCGATGCTGGGTGTACTTTCCATGAAACTGCAAC TTTTACACCTGCTCTGCGCATGCAGGGACAGGCCATCCATGAGCCGTGGG CATAACCAGTGTTTGCATATGCCGCAGCTGCTGCCTACATTGTCTTGTTG GCGGTCAGCCTCCATCATCAACTTCGAGTTGCAGTTAACACCTACCATGC TCTCGCGCCTCATGTATGACACTATCACTGATCACATCTCATGCTGATGC TTCTCACTGTCCCGCCTCCGATCCGTCCAGGCATCGGTGGACCTGCTAGC TGGCCGGCCGGTGGAACTTGAACATCTGCTTGAAGTTCCGCTGGCGCGGG CCGCCGCGCTGGGGGTACCCGCGCCAACGCTCAGCGAGCAGTTGGAGCTA GCGCGCGCTGCTGTTCAGGCGCGCATGTCAAAAGTAGAAGCACAATCACG AGGCGCAGGTTGCAGCTCGGGCGCATGCGTCGAACAGGCATGAGCAGCGA TGATTCCATAGAGCTGCGCGCATGTGTACAGGGGTATGTATGGTATACGA GTATCACAGACTGGCAGGGGCACATATACTCCTGGGTACAAAGGAATGCC CGCTTGTGAAGGAGTGTTACCTTAGAGTATAATACATGCATGTACGCGGT GCTGCTGCAATGTCG
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Coding sequence (CDS) from alignment at Contig_33:320019..323433-

>mRNA_5935 ID=mRNA_5935|Name=jgi.p|Trimin1|348941|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=918bp|location=Sequence derived from alignment at Contig_33:320019..323433- (Tribonema minus UTEX_B_3156 )
ATGGGCGGAGGGCATGACGTCACCTTCCTGCTGCGCAGCGACTACGCCGC
TGCCAAAACGCACGGCCTCGCGCTCAAATCCGCAGACGGCGACATGTACC
TACCCCCCGACTCGCCGCGGCTGCGCAGCACCACAGAGGGCATGCAGCCC
GTAGACTGGCTCGTGCTGGGCCTGAAAGCGTACGCGCTCAAACACGCTAG
GGAGCTCGCGGGACCGTGCTACGGCGTGCACACGCGCGTGCTGGCCATCA
CCAACGGCCTGTGCGACGACGATCTGGCCCTCGTATTTGGCAGGGAGCGC
ACGTTTGGAGCGATAGCGTATGTATGCGTGACGCGCGCCGCGCCCGCAGT
CATCCACCACCTGCACTACGGGGACCTGCTCATAGGCAAGCTGAGCGGCG
CGCGCGACTTGTGGCGCGACTCGCGAGTCGGAGTGGAAGTCACGCCGTGC
CTCCTGCGCGCGCGCTGGGAGAAGCTCCTGTACAACATACCGTTCTCGGG
CATGAGCGTCGCGATGGGGGGCGTAACTGTCGACATCATTGCGAAGGACC
CTAGCGCGCGCGCGGCGGCGACGCGTATGATGGAGGAGGCGCGCGCGATA
GGCAACGCGGACCTGGCGGCGCACGGCGTTGAAGGGGAGATGCCCGCAGC
GCTGCTCGGCAAGATGTGGGACTACACGGACAGGGCCGGCGCATACCTTC
CATCGGCATCGGTGGACCTGCTAGCTGGCCGGCCGGTGGAACTTGAACAT
CTGCTTGAAGTTCCGCTGGCGCGGGCCGCCGCGCTGGGGGTACCCGCGCC
AACGCTCAGCGAGCAGTTGGAGCTAGCGCGCGCTGCTGTTCAGGCGCGCA
TGTCAAAAGTAGAAGCACAATCACGAGGCGCAGGTTGCAGCTCGGGCGCA
TGCGTCGAACAGGCATGA
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