mRNA_5934 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348940
Unique NamemRNA_5934
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: A0A836CEI2_9STRA (Transmembrane protein 107 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI2_9STRA)

HSP 1 Score: 683 bits (1763), Expect = 1.620e-247
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 1 
Query:    1 MSVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMDSSVVFFHMIVRGKILEFMEIRLYEVLKIGTLYTKAQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPGEPNFKFSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTAIDLCILSTCGNLANMMLCNLLGSGSLQKACAXXXXXXXXXXXXXXXXWRETRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSVTAASARTERLAAAATGV 1101
            MSVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMDSSVVFFHMIVRGKILEFMEIRLYEVLKIGTLYTKAQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPGEPNFKFSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTAIDLCILSTCGNLANMMLCNLLGSGSLQKACAXXXXXXXXXXXXXXXXWRETRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSVTAASARTERLAAAATGV
Sbjct:    1 MSVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMDSSVVFFHMIVRGKILEFMEIRLYEVLKIGTLYTKAQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPGEPNFKFSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTAIDLCILSTCGNLANMMLCNLLGSGSLQKACAXXXXXXXXXXXXXXXXWRETRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSVTAASARTERLAAAATGV 367
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: A0A835YMB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB6_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.080e-74
Identity = 123/198 (62.12%), Postives = 142/198 (71.72%), Query Frame = 1 
Query:  487 AQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPGEPNFKFSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTAIDLCILSTCGNLANMMLCNLLGSGSLQKACAXXXXXXXXXXXXXXXXWRETRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSVTAASARTERL 1080
            +Q  FP+ TCVTQGCLLSV+GDA+SQ I +R EP EPG    ++  KRF IAG AGC+FDG  IP WYG LHG+VP   RFRGL +TAIDL +LSTCGN ANMM  NLL  GSL KA                  WRETR+K+ GVIL+DLR+FPAYDI++F+FVP+HVQALCTA VCCLWNCYLSSVTA S     L
Sbjct:  438 SQTCFPKTTCVTQGCLLSVVGDAISQAISQRQEPPEPGARPIRYCWKRFAIAGMAGCLFDGLAIPVWYGYLHGIVPNGLRFRGLALTAIDLALLSTCGNFANMMFRNLLAGGSLTKA------------------WRETRSKITGVILVDLRIFPAYDILMFTFVPRHVQALCTAAVCCLWNCYLSSVTAESTHAHPL 617
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: W7U6G1_9STRA (Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6G1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.300e-14
Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1 
Query:  469 GTLYTKAQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPGEPNFK-FSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTAIDLCILSTC-GNLANMMLCNLLGSGSLQKACAXXXXXXXXXXXXXXXXWRETRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSVT 1053
            G  Y+      P    +  G L+  +GD +SQ I   A+  +    +++  S +R   AG AG VF+G ++P WY LLH L PG    + +    +  C+   C GN A M +  +L   S   A                   +  R  + GV++ D +++P YD++ F+ +P+H+  L T  +  +W  YLS VT
Sbjct:   92 GKAYSNWMMEQPIRANLISGILMVAVGDGISQAIEVDAKTGQKKCTSWRDLSLRRLANAGFAGAVFNGVLLPQWYLLLHKLSPGAETPKTIAAKILGNCVAWGCVGNAAIMAMRRVLDGESWHDA------------------EQAVRRDLWGVMMNDYKIWPLYDVLCFTCIPRHLHGLSTGTLGIVWATYLSYVT 270
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: A0A0L0HA38_SPIPD (Transmembrane protein 107 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HA38_SPIPD)

HSP 1 Score: 65.1 bits (157), Expect = 3.360e-9
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:   16 LVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMDSS 390
            L+PARF   + H + T  +F T+   +   +   D  S QYA Y N+ T     LA+S++CFAIEL G  SG+T    G        H AG+  ++  VL  W    Y +IF F   +PAL+++ 
Sbjct:    9 LLPARFLTTIAHFITTLMVFFTKDIYVRAALPIGD--SSQYASYDNSLTAA---LALSWVCFAIELFGLFSGMTTFNQGAGTLYLWAHTAGIIALIFFVLEGWHYMIYWYIFTFCSALPALIETG 128
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: UPI000CD5DBE1 (transmembrane protein 107 isoform X5 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD5DBE1)

HSP 1 Score: 62.0 bits (149), Expect = 9.480e-8
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMD 384
            ++ +LVPARF  L  HLV    IF +R   +   + P D +  +Y   ++ +T L V L+V+   FAIELAGF SG+++      L     H +   C+   V   W    Y F+F F   +PALM+
Sbjct:   47 AIHSLVPARFLTLTAHLVIVITIFWSRDNNVRACL-PLDFSQDEY---RSQDTQLVVALSVTLGLFAIELAGFFSGVSMFNSTQSLLSLAAHCSASVCLSFFVFQQWECWTYWFVFTFCSALPALME 169
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: UPI0003EADA09 (transmembrane protein 107 isoform X2 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI0003EADA09)

HSP 1 Score: 60.5 bits (145), Expect = 1.380e-7
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMD 384
            +V +LVPARF  L  HLV    IF +R   +   +    T  +    Y + +T L V L+V+   FAIELAGF SG+++      L     H +   C+   V   W    Y +IFGF   +PA+++
Sbjct:    3 AVSSLVPARFLTLTAHLVIVITIFWSRENNVLACLPLEYTQEE----YNSQDTQLVVALSVTLGMFAIELAGFFSGVSMFNSSQGLLSLACHCSASVCLSFFVFQKWECWTYWYIFGFCSALPAVVE 125
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: A0A1S3RYM8_SALSA (Transmembrane protein 107 n=17 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3RYM8_SALSA)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-7
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMD 384
            +V +LVPARF  L  HLV    IF +R   +   + P D    QY      +T L V L+V+   FAIELAGF SG+++      L  T  H +    +L  +   W  E Y +I  F  ++PA ++
Sbjct:    3 AVSSLVPARFLTLTAHLVIVITIFWSRENNVEACL-PLDFTQDQY---DKEDTKLVVALSVTMGLFAIELAGFFSGVSMFNCTQGLLSTAAHASASVALLFFLFEQWACEIYWWILAFCSVLPAFVE 125
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: UPI0018643377 (transmembrane protein 107-like isoform X2 n=2 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018643377)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-7
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMD 384
            +V +LVPARF  L  HLV    IF +R   +   +    T  +    +   +T L V L+V+   FA+ELAGF SG+++      L   V H +   C+   V   W    Y FIF F   +PAL++
Sbjct:    3 AVHSLVPARFLTLTAHLVIVITIFWSRENNVRACLPLEFTQEE----FNAQDTQLVVALSVTLGLFAVELAGFFSGVSMFNSSQSLLSLVAHCSASICLSFFVFQKWECWTYWFIFAFCSAIPALVE 125
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: UPI0010A08AD5 (transmembrane protein 107 isoform X4 n=3 Tax=Polypteridae TaxID=8289 RepID=UPI0010A08AD5)

HSP 1 Score: 59.3 bits (142), Expect = 3.590e-7
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFF-VLVPALMD 384
            ++ +LVPARF  L+ HLV    IF +R   +   +  + T       Y N +T L V L+V+   FAIELAGF SG+++      L   V H +    +   V   W    Y +IFGF  V +PAL++
Sbjct:    3 AISSLVPARFLTLIAHLVIVITIFWSRENNVLACLPLQYTQQD----YNNKDTELIVALSVTLGMFAIELAGFFSGISMFNNSQSLLSLVAHCSAAVTLSFFVFRKWECWTYWYIFGFCSVPLPALIE 126
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BLAST of jgi.p|Trimin1|348940 vs. uniprot
Match: A0A4W6FTF6_LATCA (Transmembrane protein 107 n=33 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A4W6FTF6_LATCA)

HSP 1 Score: 58.9 bits (141), Expect = 4.800e-7
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:    4 SVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQNNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACVLAMVLNVWTAEAYKFIFGFFVLVPALMD 384
            +V +LVPARF  ++ HLV    IF +R   +   + P D   +QY    N +  L V LAV+   FAIELAGF SG+++      L  T +H +    +L  +   W  + Y +I     ++PA ++
Sbjct:    3 AVNSLVPARFLTIIAHLVIVITIFWSRENNIKACL-PLDFTQEQY---DNEDKKLVVALAVTLGLFAIELAGFFSGVSMFNCSQGLLSTGVHASASVALLFFLFEQWECDIYWWILAICSVLPAFVE 125
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348940 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEI2_9STRA1.620e-247100.00Transmembrane protein 107 n=1 Tax=Tribonema minus ... [more]
A0A835YMB6_9STRA1.080e-7462.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U6G1_9STRA4.300e-1428.43Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A0L0HA38_SPIPD3.360e-935.20Transmembrane protein 107 n=2 Tax=Spizellomyces Ta... [more]
UPI000CD5DBE19.480e-834.65transmembrane protein 107 isoform X5 n=2 Tax=Param... [more]
UPI0003EADA091.380e-733.86transmembrane protein 107 isoform X2 n=2 Tax=Lepis... [more]
A0A1S3RYM8_SALSA1.890e-734.65Transmembrane protein 107 n=17 Tax=Protacanthopter... [more]
UPI00186433771.890e-733.86transmembrane protein 107-like isoform X2 n=2 Tax=... [more]
UPI0010A08AD53.590e-735.16transmembrane protein 107 isoform X4 n=3 Tax=Polyp... [more]
A0A4W6FTF6_LATCA4.800e-733.07Transmembrane protein 107 n=33 Tax=Euacanthomorpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:313462..318858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348940|estExt_Genemark1.C_Ctg_330046
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
Preferred nameTMEM107
DescriptionTransmembrane protein 107
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs2AP86@1|root,2RZG7@2759|Eukaryota,3A1JP@33154|Opisthokonta,3BQA6@33208|Metazoa,3D74N@33213|Bilateria,48E4Z@7711|Chordata,49B12@7742|Vertebrata,4A3KX@7898|Actinopterygii
Evalue4.38e-11
Seed ortholog7994.ENSAMXP00000013470
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTransmembrane protein 107
Ec32 orthologEc-01_011890.1
TranscriptId349262
TrackFilteredModels1
ProteinId348940
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348940gene_5934Tribonema minus UTEX_B_3156 geneContig_33 313462..318858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348940Trimin1|348940|estExt_Genemark1.C_Ctg_330046Tribonema minus UTEX_B_3156 polypeptideContig_33 313462..318858 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5934_1exon_5934_1Tribonema minus UTEX_B_3156 exonContig_33 313462..313707 +
exon_5934_2exon_5934_2Tribonema minus UTEX_B_3156 exonContig_33 314041..314246 +
exon_5934_3exon_5934_3Tribonema minus UTEX_B_3156 exonContig_33 315797..315836 +
exon_5934_4exon_5934_4Tribonema minus UTEX_B_3156 exonContig_33 316199..316491 +
exon_5934_5exon_5934_5Tribonema minus UTEX_B_3156 exonContig_33 317643..317696 +
exon_5934_6exon_5934_6Tribonema minus UTEX_B_3156 exonContig_33 317779..317935 +
exon_5934_7exon_5934_7Tribonema minus UTEX_B_3156 exonContig_33 318751..318858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5934CDS_5934Tribonema minus UTEX_B_3156 CDSContig_33 313462..313707 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Trimin1|348940|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1104bp|location=Sequence derived from alignment at Contig_33:313462..318858+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTCCAGACGCTGGTGCCTGCTAGGTTCTCGTGCCTAATGCTGCA
CCTCGTGGCCACCTCCGCGATCTTCCACACGCGAGGCACGTTGCTGAGCG
TGACTATAGATCCCAGAGATACGGCGTCGCAACAGTACGCTGTGTATCAA
AACAACGAGACCACGCTGTTCGTGCTGCTCGCCGTGTCTTACATATGCTT
CGCCATCGAGCTCGCGGGCTTTGCCAGCGGTCTCACCCTGCACCAGATCG
GACTGCACCTGTGCTGCACAGTGCTGCACCTGGCAGGGCTCGCATGCGTG
CTGGCTATGGTCCTCAATGTGTGGACAGCGGAAGCGTACAAGTTCATCTT
CGGCTTCTTCGTCCTCGTTCCAGCCCTGATGGACTCGTCTGTGGTCTTCT
TTCACATGATTGTGAGAGGCAAAATCCTGGAGTTCATGGAAATCCGCCTG
TACGAGGTGCTCAAGATTGGCACACTTTACACCAAGGCGCAGGCATCCTT
CCCGCGGGCGACCTGCGTCACCCAGGGCTGCCTCCTCTCCGTATTAGGCG
ATGCTCTCAGCCAAGAAATTTACCGCAGAGCAGAGCCCCAGGAGCCTGGC
GAACCCAACTTCAAGTTCTCCAAGAAGCGGTTTCTCATAGCGGGCGCGGC
GGGATGCGTGTTTGACGGTTTCGTGATTCCGACGTGGTATGGTCTGCTGC
ACGGGCTGGTGCCGGGGCACACGCGCTTCCGCGGCCTCGTCATGACGGCC
ATCGACCTGTGCATACTGAGCACGTGCGGAAACCTCGCCAACATGATGCT
GTGCAACCTGCTGGGCAGCGGGTCACTGCAGAAGGCGTGCGCCAACATGA
TGCTGCGCAACCTGCTTGGCAGCGGTTCGCTGCAGAAGGCGTGGCGCGAG
ACGCGTGCCAAGGTCCTCGGCGTGATCTTGCTGGACCTGCGCCTGTTTCC
CGCCTACGACATCATCGTCTTCAGCTTTGTGCCAAAACACGTGCAGGCGC
TGTGCACTGCTTTCGTGTGCTGCCTGTGGAACTGCTACCTGAGCAGTGTG
ACGGCGGCGTCTGCGCGCACGGAGCGCCTCGCCGCCGCCGCCACCGGCGT
TTAG
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protein sequence of jgi.p|Trimin1|348940

>Trimin1|348940|estExt_Genemark1.C_Ctg_330046 ID=Trimin1|348940|estExt_Genemark1.C_Ctg_330046|Name=jgi.p|Trimin1|348940|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=368bp
MSVQTLVPARFSCLMLHLVATSAIFHTRGTLLSVTIDPRDTASQQYAVYQ
NNETTLFVLLAVSYICFAIELAGFASGLTLHQIGLHLCCTVLHLAGLACV
LAMVLNVWTAEAYKFIFGFFVLVPALMDSSVVFFHMIVRGKILEFMEIRL
YEVLKIGTLYTKAQASFPRATCVTQGCLLSVLGDALSQEIYRRAEPQEPG
EPNFKFSKKRFLIAGAAGCVFDGFVIPTWYGLLHGLVPGHTRFRGLVMTA
IDLCILSTCGNLANMMLCNLLGSGSLQKACANMMLRNLLGSGSLQKAWRE
TRAKVLGVILLDLRLFPAYDIIVFSFVPKHVQALCTAFVCCLWNCYLSSV
TAASARTERLAAAATGV*
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mRNA from alignment at Contig_33:313462..318858+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Trimin1|348940|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5397bp|location=Sequence derived from alignment at Contig_33:313462..318858+ (Tribonema minus UTEX_B_3156 )
ATGTCGGTCCAGACGCTGGTGCCTGCTAGGTTCTCGTGCCTAATGCTGCA
CCTCGTGGCCACCTCCGCGATCTTCCACACGCGAGGCACGTTGCTGAGCG
TGACTATAGATCCCAGAGATACGGCGTCGCAACAGTACGCTGTGTATCAA
AACAACGAGACCACGCTGTTCGTGCTGCTCGCCGTGTCTTACATATGCTT
CGCCATCGAGCTCGCGGGCTTTGCCAGCGGTCTCACCCTGCACCAGGTGG
GTCAACTTTAAAAAACTGCAAGCAAGCGCTTGAGATGGAGTGATCCAGAC
CTAGTAGTACATTCGTGTGCATGCGGCGATTTGCAGTCTCTGATGCACTG
ATTGTTATGTTACACACACCATTTGAGCATGCAAACCGCTTCAATTGATC
ATCCCATGCAGTGTACGCAAGATGGTTGCTGGTTGCTTTTTCTGCACAAA
GCCTGTGCATTCAATTCAGGGCAATCTGCTGGCATGCAACTGCTAAGCAT
ACGCCAATCGTCTTTCTTCTCGTCTCTGTCTCATAAATTCGGAATTTGTG
GCGTTGTCTCCCCCACATGGCCCAAGCAGATCGGACTGCACCTGTGCTGC
ACAGTGCTGCACCTGGCAGGGCTCGCATGCGTGCTGGCTATGGTCCTCAA
TGTGTGGACAGCGGAAGCGTACAAGTTCATCTTCGGCTTCTTCGTCCTCG
TTCCAGCCCTGATGGACTCGTCTGTGGTCTTCTTTCACATGATTGTGAGA
GGCAAAATCCTGGAGTTCATGGAAATCCGCCTGTAGTCGGGGGCAATGGC
TGAGCGTTGCTGCTGATGGTGCTGCACAGTAAGGCGCACGGACAAGAGCC
AGGAGCTCTGAGAGGAGAGATGAAAGGGGAACAGGGGGAAGGAGGTAACT
GAGCTGCACATTGCAGCACCGGTGGCCAGCATGCGTACAGTGAGTGGCTC
CACGTGCCCCCCCACACCTTGTGCAACAGCAATAGGCGATGTTTTGCTTG
CCACAAGTGGCGCTGAGCCCGTATGGCACGGCTGCAAGGTGGGCATGGTG
TAATGCCGTGATAATGGCTTTGCACACGTGGTGCAGCGAACACACGTCGC
ATGCATGCATCATGTACGGGTTTAAAGCGTGATACATACCCATGTTGGCG
CGGTGCGGGAGGCACACATGTCGATCAGCAGACCGTGCAGCTACACACTC
AGCAGACCATGCAGGTGCCTTTAGACCCCCGTCATAGCTAAAGGTGAACG
ATGTGAAGGGTGCGAGCGCTCACACATCATGTGGTGCGCGTAATCATGCT
GCAACAATACAAGCAAGGCAAAGGCGGGCGCTGCTTTGAAACATTTATGT
TTTGGAACATCCTGAACCGCCAAACACAAGGCGGCAAAACGGGTTCCTCA
CGGAGCCAACAAGGTCGAAAGTTCAGCAGCATCACATAAATGAAATTCAC
CAGGGTCCAGGTTCTAAGTTCCAACGGCGTTGTTGTATCCACTACACCTC
TGTTGTGTTTGCTTTTGGCCTCGTACAGTGAAGATACACATCTGGATATG
CGTCCAAGTATAATTCTCTTTAGCCCTGCATTGCTACCATTGGAATCAGA
TGCGACTGCTTGATGTGTTTAGAACCACACATGACATCATACATATCAAT
GGTAAGAAGCAGCGCACATGTGCATATCACAGCAGCGTACAGAACATAGC
GATCGCATTTATTGCTTGTATCATTGGTGCACTGTTGTATGCTGTGCGTT
AAAACACATCATGACTACATATATACATGCAGTATGATCACAAACAGTGA
CAATGCCTGTTCAGGCCTGCATTGAGCCTTCTTGTGCCTTTGCAGTGGCA
GCCACTACATATGTACTTAGACATGCCGCAATCAGCAGGAAAGAGTGGGA
CATCGGTGATCCGCCGGGACATCGACGCACGGATGCTGAATGTTCATTCA
TTTGCTGCAGCTACGTATCTTGGCTCTGGGGCATCTGACAATGCATGCAA
AACAGCATAATCCCTATCAAAGTTTTGGCGTTTCTGCATTTGTAACCGTC
GCATGTCTGTCACACACCACCTCGCAGATAAACATGTCAACCAGGTAATC
GACGTACTGTGATAGCAACTATGAGGTCCTATGCGCTGCAACTGGCGCTG
CTGGGCTGCGTGCTCGCGAGCACAAGTGCATCTCTGCTTCCTCGCAGACA
TACCAGCAGCGCTTCAGGCAGTGTCCGAAGGGGTAGGCAGCAGCAGCAGC
AGGAGAAGCATCGCCAATTGACGCAGAGATTGCCGTGTTCGGCCAGATCG
TCGCACGTGGCTTTATGTTCCGTGCTCAATCTCAGCGAGGTGCTCAAGAT
TGGCACACTTTACACCAAGGCGCAGGTGCGTGCATTCCGTGATGCTGCTG
CATCGCTGCACCTGCGGCTTGTAATGGCAGTACGGGTCTGCAAATTAAAT
GATGCTTAAAGTGTGATGGACGTCTTCTGCACTGCATGACGGGGTTTGCA
CGCATGCTGCAGCAATCACCAGGCACCGCACAAGCACCCTCACGCTATCT
GCACTTCAGCAGTACAATGTCGCTCAGGATGCAATATGGAGACTCAATCT
GTAGATCTATTCAGATGCTGTATTTGTGGCAGACAGTTATGTGTGGCCCT
GTCACCCGCATGTCAAAGCACCTGTGGCTGCCGCCTCTCACTTGAAATCT
TCTTACGCCAGCCGTCTACCTACTGTCGCATTGTCAGGCATCCTTCCCGC
GGGCGACCTGCGTCACCCAGGGCTGCCTCCTCTCCGTATTAGGCGATGCT
CTCAGCCAAGAAATTTACCGCAGAGCAGAGCCCCAGGAGCCTGGCGAACC
CAACTTCAAGTTCTCCAAGAAGCGGTTTCTCATAGCGGGCGCGGCGGGAT
GCGTGTTTGACGGTTTCGTGATTCCGACGTGGTATGGTCTGCTGCACGGG
CTGGTGCCGGGGCACACGCGCTTCCGCGGCCTCGTCATGACGGCCATCGA
CCTGTGCATACTGAGCACGTGCGGAAACCTGTGAGTGCAATGGACAGTAG
TGAGTCTTGCACGGTGTTCGGCTGATGAACTGTTTATGTATTTACGGCAC
GCAAGGAGATGCTTGCATACCGAGCCCGTGCGGCAACCTGTGAGTACAGT
GGCGGAGTTCAAGACGTCTCTCATGGTTTTCGTTCAATAGGTTATTCAGG
GTTTTGCGGCACGAAAGGAGATACTTGCGTACTGAGCACGTTCGGAAACC
TGTGAGTGTGGTGGAGATTAGTGTGTCTTTCATGGTTTTTTGTTCGATTG
ACTCTTCAAGCGTTTGCGGCGCGAGTGGGAATGCTTGCAAAGGTGGAGAT
GCTTGCATTGCTGAAGATGCTTTCATCGTGTGCCTGGGAGTACGCGGCGA
TACGATAGTAAACTGCACAGACAGTGTGCACAGGAAATTGCGAGCGCCAT
GTGACGCGCCCTTTGTCAGCTGCAGAGACAGTGTCGGCAGATGGGGGCGC
TTGTCAGTTACTGTCAGTTACAGCAAGTCTCCGCATCAGCGCTCATCAGC
TGATGCGGACCTCATACCTACTGTATGCTGGTGAAACACCAAGCTTGCAG
GGCAGGGGGTGGGTGCATCCCATCTCGCCGCAAACCTGCAAATGCAATAG
CTGTGTGCAGGGGCTCACATTTGTGGTACAGCTTGTACGGTAGGCACACT
TACAGAGTTTTGCAGTTGTTGGACTCGTCTTGACAGCTAGCGGCACGAAT
GTGGTGTTTGCATTCTCACTTCTGCACGGCCTTTAGAAGCTATGAAGAGT
TGAGACATGAAGACAATGCCCCGCAGTGCATGCTGCTACGCAACCCATTG
CTGAGCACTGTGCCCTACGCCACAGCGCGCCACATGGCGCGTCTCAGTGC
GCGCTGTCACATGCGCTGCAGCGCCGACACGCTCCTGTTGAGCGCTGCGA
TACGATGCCCCCATGTCTCACCGCGCGCCACATGGCACGTCTCACTGCGC
ACCGCATGTCTGTCGTGCCGCAGCGCCAACATGATTTTGCGCAACCTATA
CTTGAGCACTGTGCCAACACGCAAGTGCCCCCATGTGCCGCACATCACAC
CGCACCTCACAGAGTGCGCAGCATATTGCTCACAGCCACATGCCTGTGTT
AACTGGTCGCCACCTGTCTGTCATGCTGCAGCGCCAACATGATGCTGTGC
AACCTGCTGGGCAGCGGGTCACTGCAGAAGGCGTGGTGCGAGACGCGCCA
CATGGCATGTCTCACTGCGCGCCACATGGCATGTCTCACTGGTCGCCACC
TGTCTATTGTCTTGCAGCGCCAACATGATGCTGCGCAACCTGCTTGGCAG
CGGTTCGCTGCAGAAGGCGTGGCGCGAGACGCGTGCCAAGGTCCTCGGCG
TGATCTTGCTGGACCTGCGCCTGTTTCCCGCCTACGACATCATCGTCTTC
AGCTTTGTGCCAAAACACGTGCAGGTGACGTTTTTGACCTGAAAGTTGAC
ATTTGACGATTACCTTCAAGTTCAGTTACTTCAGAGTACAATGGCGTACA
TGCGCACGCGTAATGTGATGGCAATGTTGTTGTGATCTAATTGTCAGTGC
GCATTGAGACACCTTCAGGTTTTCACATTGTACATGTAGATTCTGGTGGC
GAGCTGGACATCTATCATCAGGGCTGTTTGGCACCGCCAGCGAACACATG
TAAAGGCGGGGCACGGCGTGTACGGGGGTGCGGGGTGCATCACAAGAAAA
CCATTGTTGATACAAGTTCTGTCATCAACAGATTCAACGGGCACTTGTCG
CAGCCCCAGGTGGAGCACAGCAAGAGCGCACGCATGCACTGTGGAAGTTT
ACAACAACTGCCAGCTGGCAGCATTCAGAGTGTCATGGCAGTGCTTTCAT
GCACTGTGGGGAATTTGGCTGTTACATGGTGCACGACTTCTTTTCCTTTT
TTCGGCAGCCACCCGTGACCTGATTGTCATCCTCAACGTCATTGTTGCCC
TCCTGCCGGCAGCATGTGAGCATTCTATGGCATGCACAATCACGCGGTAC
TATCCCAACATTGCTGTGTCAACTGCCTGCGCACCACAACGGCTCAAGGC
CACTTGAACCCACAGTTGAACATGACCACGGGTTTTGGTGGAAGGCATTT
GCGGCTCACCATCCCGTATCACCTAGAGCTCTACGATCATTTGGTTCGTT
TTCATGACGTTCAAACATGAATCAAAACACCACACGGCGTCTCTCCCACT
CTCACCAGCTGGTATCTCCACTCTACCGTCCGCACGCAGGCGCTGTGCAC
TGCTTTCGTGTGCTGCCTGTGGAACTGCTACCTGAGCAGTGTGACGGCGG
CGTCTGCGCGCACGGAGCGCCTCGCCGCCGCCGCCACCGGCGTTTAG
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Coding sequence (CDS) from alignment at Contig_33:313462..318858+

>mRNA_5934 ID=mRNA_5934|Name=jgi.p|Trimin1|348940|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1104bp|location=Sequence derived from alignment at Contig_33:313462..318858+ (Tribonema minus UTEX_B_3156 )
ATGTCGGTCCAGACGCTGGTGCCTGCTAGGTTCTCGTGCCTAATGCTGCA
CCTCGTGGCCACCTCCGCGATCTTCCACACGCGAGGCACGTTGCTGAGCG
TGACTATAGATCCCAGAGATACGGCGTCGCAACAGTACGCTGTGTATCAA
AACAACGAGACCACGCTGTTCGTGCTGCTCGCCGTGTCTTACATATGCTT
CGCCATCGAGCTCGCGGGCTTTGCCAGCGGTCTCACCCTGCACCAGATCG
GACTGCACCTGTGCTGCACAGTGCTGCACCTGGCAGGGCTCGCATGCGTG
CTGGCTATGGTCCTCAATGTGTGGACAGCGGAAGCGTACAAGTTCATCTT
CGGCTTCTTCGTCCTCGTTCCAGCCCTGATGGACTCGTCTGTGGTCTTCT
TTCACATGATTGTGAGAGGCAAAATCCTGGAGTTCATGGAAATCCGCCTG
TACGAGGTGCTCAAGATTGGCACACTTTACACCAAGGCGCAGGCATCCTT
CCCGCGGGCGACCTGCGTCACCCAGGGCTGCCTCCTCTCCGTATTAGGCG
ATGCTCTCAGCCAAGAAATTTACCGCAGAGCAGAGCCCCAGGAGCCTGGC
GAACCCAACTTCAAGTTCTCCAAGAAGCGGTTTCTCATAGCGGGCGCGGC
GGGATGCGTGTTTGACGGTTTCGTGATTCCGACGTGGTATGGTCTGCTGC
ACGGGCTGGTGCCGGGGCACACGCGCTTCCGCGGCCTCGTCATGACGGCC
ATCGACCTGTGCATACTGAGCACGTGCGGAAACCTCGCCAACATGATGCT
GTGCAACCTGCTGGGCAGCGGGTCACTGCAGAAGGCGTGCGCCAACATGA
TGCTGCGCAACCTGCTTGGCAGCGGTTCGCTGCAGAAGGCGTGGCGCGAG
ACGCGTGCCAAGGTCCTCGGCGTGATCTTGCTGGACCTGCGCCTGTTTCC
CGCCTACGACATCATCGTCTTCAGCTTTGTGCCAAAACACGTGCAGGCGC
TGTGCACTGCTTTCGTGTGCTGCCTGTGGAACTGCTACCTGAGCAGTGTG
ACGGCGGCGTCTGCGCGCACGGAGCGCCTCGCCGCCGCCGCCACCGGCGT
TTAG
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