mRNA_5931 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348937
Unique Name	mRNA_5931
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A835YZB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB1_9STRA)

HSP 1 Score: 990 bits (2559), Expect = 0.000e+0
Identity = 614/614 (100.00%), Postives = 614/614 (100.00%), Query Frame = 1

Query:    1 MGPGPPGSAISFVGGPVGMPQPPGSSGAPTATGAKPAVGDGSRAPPAHDLLHHPVLEQALDRRAAAGLPMGFPEGLGQNTGLRRGLEFPDSRTCVQYLRDYMVGIGKRLATDQTGGKSKRFKCSGNGCPFIVNVTKTRQGIWRVTNVIPEHSEECDGVPIGSRPPIILXXXXXXXXXXXXXXXXXXXXXXPKPGAAAAKKRLRVEGKAGEMAPGLAAIQQLPAPPGVGGAVVKLPQQGEGAAVRKRVTLMSWNVWKMEGVPALFPQRAAAFKALLQTYAPDVLCVQELHPVTSAAIRQALLTHASTADGGAETPPPPPTPVAMPILPTMPQVDPSKPPQLGLPXXXXXXXXXXXXXXXAGAPLQLGAPPPMQLPMQPQQQMVVPALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVITILAALATHTFPFIHGNHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            MGPGPPGSAISFVGGPVGMPQPPGSSGAPTATGAKPAVGDGSRAPPAHDLLHHPVLEQALDRRAAAGLPMGFPEGLGQNTGLRRGLEFPDSRTCVQYLRDYMVGIGKRLATDQTGGKSKRFKCSGNGCPFIVNVTKTRQGIWRVTNVIPEHSEECDGVPIGSRPPIILXXXXXXXXXXXXXXXXXXXXXXPKPGAAAAKKRLRVEGKAGEMAPGLAAIQQLPAPPGVGGAVVKLPQQGEGAAVRKRVTLMSWNVWKMEGVPALFPQRAAAFKALLQTYAPDVLCVQELHPVTSAAIRQALLTHASTADGGAETPPPPPTPVAMPILPTMPQVDPSKPPQLGLPXXXXXXXXXXXXXXXAGAPLQLGAPPPMQLPMQPQQQMVVPALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVITILAALATHTFPFIHGNHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI
Sbjct:    1 MGPGPPGSAISFVGGPVGMPQPPGSSGAPTATGAKPAVGDGSRAPPAHDLLHHPVLEQALDRRAAAGLPMGFPEGLGQNTGLRRGLEFPDSRTCVQYLRDYMVGIGKRLATDQTGGKSKRFKCSGNGCPFIVNVTKTRQGIWRVTNVIPEHSEECDGVPIGSRPPIILXXXXXXXXXXXXXXXXXXXXXXPKPGAAAAKKRLRVEGKAGEMAPGLAAIQQLPAPPGVGGAVVKLPQQGEGAAVRKRVTLMSWNVWKMEGVPALFPQRAAAFKALLQTYAPDVLCVQELHPVTSAAIRQALLTHASTADGGAETPPPPPTPVAMPILPTMPQVDPSKPPQLGLPXXXXXXXXXXXXXXXAGAPLQLGAPPPMQLPMQPQQQMVVPALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVITILAALATHTFPFIHGNHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 614

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A821GAD6_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821GAD6_9BILA)

HSP 1 Score: 96.3 bits (238), Expect = 2.280e-18
Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 1

Query: 1357 IFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVIT-------------ILAALATHTFP----------------------FIHG-------NHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            I++N+ LF +   G  ++ + E P R+L + +LKI  T ++ T             IL A A +T+                        +H         H  V  +GD NE+FHP R+L +A + DCFSAL +PA  THP RPS PKE+   D  LDW+     AR +LA+V+RD    G          SDH PV+  YEI
Sbjct:   66 IYWNSNLFDMVEYGIVDIGMKE-PLRRLFWVLLKITITPKLTTEEQMKSEKITTQQILVATAHYTWEGHVEEHTTNINLRKQQAQRTTTALHALQSKFGDPHLAVLFMGDLNENFHPRRILREAGFIDCFSALRLPALPTHPQRPSAPKEDILGDCPLDWITQNNYARPILATVLRDLVCTGG------YSVSDHCPVMCIYEI 262

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A817M2X2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817M2X2_9BILA)

HSP 1 Score: 87.8 bits (216), Expect = 2.520e-15
Identity = 60/177 (33.90%), Postives = 86/177 (48.59%), Query Frame = 1

Query: 1357 IFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVIT-------------ILAALATHTFP----------------------FIHG-------NHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRD 1761
            I++N+ LF +   G  ++ + E P R+L + +LKI  T ++ T             IL A A +T+                        +H         H  V  +GD NE+FHP R+L +A + DCFSAL +PA  THP RPS PKE+   D  LDW+     AR +LA+V+RD
Sbjct:   66 IYWNSNLFDMVEYGIVDIGMKE-PLRRLFWVLLKITITPKLTTEEQMKSEKITTQQILVATAHYTWEGHVEEHTTNINLRKQQAQRTTTALHALQSKFGDPHLAVLFMGDLNENFHPRRILREAGFIDCFSALRLPALPTHPQRPSAPKEDILGDCPLDWITQNNYARPILATVLRD 241

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A821XJI7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821XJI7_9BILA)

HSP 1 Score: 89.7 bits (221), Expect = 4.820e-15
Identity = 50/117 (42.74%), Postives = 65/117 (55.56%), Query Frame = 1

Query: 1495 ALATHTFPFIHGN-HNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            A A H      G+ H  +  +GD NE+FHP R+L +A + DCFSAL +P   THP RPS PKE+   D  LDW+     AR +LA+V+R+    G          SDH PV+  YEI
Sbjct:  165 ATALHALQSKFGDPHLAMLFMGDLNENFHPRRILHEAGFIDCFSALRLPCLPTHPQRPSTPKEDFLGDCPLDWITQNNYARPILANVLRNLICTGG------YSVSDHCPVMCIYEI 275

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A821DD16_9BILA (Hypothetical protein n=9 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821DD16_9BILA)

HSP 1 Score: 89.7 bits (221), Expect = 6.550e-15
Identity = 50/117 (42.74%), Postives = 65/117 (55.56%), Query Frame = 1

Query: 1495 ALATHTFPFIHGN-HNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            A A H      G+ H  +  +GD NE+FHP R+L +A + DCFSAL +P   THP RPS PKE+   D  LDW+     AR +LA+V+R+    G          SDH PV+  YEI
Sbjct:  165 ATALHALQSKFGDPHLAMLFMGDLNENFHPRRILREAGFIDCFSALRLPCLPTHPQRPSTPKEDFLGDCPLDWITQNNYARPILANVLRNLICTGG------YSVSDHCPVMCIYEI 275

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A800LTS4_9BACT (Endonuclease n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A800LTS4_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-13
Identity = 60/191 (31.41%), Postives = 88/191 (46.07%), Query Frame = 1

Query: 1351 GGIFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVITILAALATHTF------------PFIHGNHN-------------PVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHP--KEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            G I++N   F     G E++ + E   R+L +  LK+    R  T+    A +T+            P I                  P   +GD N+  HP R++ +A Y +CFSALG+P   THPA P+           +T+DW+F+   ARAV A V   +       G+VA  PSDH+PV+A YE+
Sbjct:   72 GTIYWNRTYFSEVEHGIEDVGMLEE-QRRLFWVRLKLTGQDR--TVFVGTAHYTYQGHPLERDTGQSPRIEQTRRTIEAMQRLVFEDEPAVFMGDLNDPVHPVRMMHEAGYVNCFSALGIPTVPTHPAYPTTNILPGARSTQQTIDWIFANKHARAVAAQVPHCYH------GDVA--PSDHWPVLAVYEV 251

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A818T5S1_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818T5S1_9BILA)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-12
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1

Query: 1495 ALATHTFPFIHGN-HNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            A A H      G+ H  +  +GD NE+FHP R+L +A + DCFSAL +P   THP RPS PKE+   D  LDW+     AR +LA+V+R+    G          SDH P    + +
Sbjct:  151 ATALHALQSKFGDPHLAMLFMGDLNENFHPRRILHEAGFIDCFSALRLPCLPTHPQRPSTPKEDFLGDCPLDWITQNNYARPILANVLRNLICTGG------YSVSDHCPKSTIFNL 261

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A818X0F9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818X0F9_9BILA)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-9
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1

Query: 1495 ALATHTFPFIHGN-HNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEERPDRTLDWV 1713
            A A H      G+ H  +  +GD NE+FHP R+L +A + DCFSAL +P   THP RPS PKE+   D  LDW+
Sbjct:  165 ATALHALQSKFGDPHLAMLFMGDLNENFHPRRILREAGFIDCFSALRLPCLPTHPQRPSTPKEDFLGDCPLDWI 238

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: UPI000831E21C (endonuclease/exonuclease/phosphatase family protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI000831E21C)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-9
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1

Query: 1540 PVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHTHPARPSHPKEEE--RPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAVHPSDHFPVVACYEI 1842
            P F++GDFN+ +HP R+L +A Y  CF+AL +  P T PA P+   +    + +   DW+ +   AR + A     +       G+V+  PSDH+PVVA YE+
Sbjct:  157 PAFVMGDFNDAYHPSRILHEAGYVSCFAALSLQPPATFPAVPTANPDPSAHQYNACFDWITANRHARPLAAHSPHCYH------GDVS--PSDHWPVVAVYEL 251

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A815LN04_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815LN04_ADIRI)

HSP 1 Score: 63.2 bits (152), Expect = 2.680e-7
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  733 KRVTLMSWNVWKMEGVPALFPQRAAAFKALLQTYAPDVLCVQELHPVTSAAIRQALLTHASTAD 924
            +R+++M++N+WK++G P  +P R       L T+ PD+LCVQELHP+    I QAL +H    D
Sbjct:    4 QRISVMTFNMWKVDGYPGNWPDRQVPILECLTTFTPDILCVQELHPLLQETILQALPSHTYVKD 67

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A836CH32_9STRA (Plus-3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH32_9STRA)

HSP 1 Score: 1315 bits (3404), Expect = 0.000e+0
Identity = 967/967 (100.00%), Postives = 967/967 (100.00%), Query Frame = 1

Query:    1 MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG 2901
            MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG
Sbjct:    1 MSSLRLALKRSLDVNHDDSEASSDPNARPAPPPVAVKRXXXXXXXXXXXXXXXXXVHSDSEELGEDEDTGAHSESGTSSGSDDGRKGGXXXXXRSGSNRRLSVNASATKGGARQQRRGSGARSRSPSASPAASSEDTDAYDEDLYENEEDKAKLMAMPEVERENILYERAERRRERXERRATLQRVKARIGTKGAATAAVFSTQVVSXXXXXXXXXXXXXAAPRALSLKQXXXXXXXXXXXXXXXKTAAAEAARKLAAAXTAYTDTSSESEQEEVPKPGTRSAPVPAKAERGASSDDSSDGDKPQRSSRDQRAASPNRDARRRRSDSESGASAHSSDXXXXXXXXXXXXXXQRSSRQRASSXXXXXSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRADSPEERHSGRTQAESGPPAPAVAMAWESAVTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVGTSPTRGRSPVPPEEQQAEQLPQEQEEDEDGAFDGAEETKSREALSDLQRDAAAEIATAGMGELAIQAPDNANGGMDTNGADKNGGMTPRTQQLHKKHSFGXXXXXXXXXXXXXXXXXXXXXAQLGXXXXXXXXXXXXEAERAAAAAQQAPVEPRAATNRRAGMSLSDYLKQARKLQEQMG 967

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A6H5JFI3_9PHAE (Plus3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.770e-28
Identity = 109/343 (31.78%), Postives = 155/343 (45.19%), Query Frame = 1

Query: 1351 LNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGM-RNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAK-RDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDLAKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDA--------ATARRRQSQENGQAKTSDPFARRACRPKIL 2349
            L DIN CRVPR+ LE+W NEP+F++A++GCFV++  G+ R+ + VY M               E+ GV  YKR+Y + G   T K L +   S++ RD  MD +SN RI+E E+  W+      +V   T  EC AR  R    V  H+Y+VE V+ MVK+   +G    + AL++ KL  ++ AAV    ++EAD                                                    R+ LAKL+E EA+KK  ++                     MR+LN RN+  NI  D         A A+ R +   G     DPF RR+CRP+IL
Sbjct:  540 LEDINRCRVPRDYLERWANEPYFEKAVQGCFVRVARGVGRSGERVYVM--------------AEIVGVGPYKRKYKI-GNSYTHKCLKISASSSQVRDQCMDIVSNSRISEAEYTRWKDGRKGAKVPTLTVSECNARRVRMNKIVKGHRYSVEEVSAMVKQRESEGVAFKNIALSRDKLTNSLEAAVAEGREDEADFC--------------------------------------------------REQLAKLDEREAQKKKSLDSGAA----------------GMRALNERNKTFNIRTDTHVGRKKRLAEAKARVASAAGDEGDFDPFKRRSCRPQIL 801

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: D8LLT9_ECTSI (Plus3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.150e-26
Identity = 76/196 (38.78%), Postives = 114/196 (58.16%), Query Frame = 1

Query: 1351 LNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGM-RNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAK-RDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLSSAALAKLKLERAIGAAVMRLEKEEAD 1932
            L DIN CRVPR+ LE+W NEP+F++A++GCFV++  G+ R+ + VY M               E+ GV  YKR+Y + G   T K L +   S++ RD  MD +SN RI+EGE+  W+      +V   T  EC AR  R    V  H+Y+ E V+ MVK+   +G   ++ AL+++KL+ ++ AAV    ++EAD
Sbjct:  240 LEDINRCRVPRDYLERWANEPYFEKAVQGCFVRVARGVGRSGERVYVM--------------AEIVGVGPYKRKYKI-GNSYTQKCLKISASSSQVRDQCMDIVSNSRISEGEYTRWKDGRKGAKVPTLTVSECNARRVRMNKIVQGHRYSAEEVSAMVKQRQSEGVAFTNVALSRMKLDNSLEAAVAEGREDEAD 420

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A7S2SHN1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHN1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.340e-19
Identity = 91/345 (26.38%), Postives = 149/345 (43.19%), Query Frame = 1

Query: 1348 TLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPG----GMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMVKRNAEQGRVLS--SAALAKLKLERAIGAAVMRLEKEEADLAAAXXXXXXXXXXXXXXXXXXXXMASRGGALRELEEAQEKHLAASAEVDQLRDDL-AKLEEEEARKKARMEDAQGRAIXXXXXXXXXXXXXXMRSLNARNRGANIAIDAATARRRQSQENGQAKTSDPFARRACRPKILWAVG 2361
            +L+DIN+ R+PR  LE+ + EP+ D+A+KG FV+  +G  +   VYRM              CE++GV +  + Y +       + T   L + +G  +R  ++D +SN R  + E   W++     R+++ TP EC+ R+ +       H YT E +A MV R  +  ++    + A AK++++  +  A  +L     DLA A                       R  A  + E  +E+              L A+LE+   + K R E  +G+                +  +N RN   NI ID+  +RR  ++    A   DPF R   R K LW  G
Sbjct:  328 SLHDINLVRIPRLFLERKIEEPYLDKAVKGSFVRYLIGTHHGTKVYRM--------------CEIKGVERLPKPYKLSAVNRKELTTHNYLRIAYGKDERQVKIDKVSNSRFKDAELEQWKRYFRDKRLRMITPTECKRRHQKLVEISKNHTYTAEEIATMVDRRRKNSKMSGRQNLASAKIRIQSEMDVARSKL----VDLATAEQANEAMLNEMDNLDP-----VQRHRAQADYENTRERIXXXXXXXXXXXQGLNAELEQLLNQAKKRTEKFKGKE-------------DALAKINERNARENIQIDSVDSRRVLAETMSAAAAHDPFRRTKTRTKDLWKTG 636

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A7S4A0N2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0N2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-18
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 1

Query: 1360 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 1779
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A7S4A086_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A086_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.760e-18
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 1

Query: 1360 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 1779
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273

[Close]

BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: A0A7S4A040_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A040_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-17
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 1

Query: 1360 INMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMR---NNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 1779
            IN  R+PR+ LEKW+ EPFFD A+ GCFV+LGVG       +  Y++              CE+ GV +YK  Y + G   T KAL LR G   R +RM+ ISNHR T  E   W+      R K+P+ +E   R AR +  V
Sbjct:  146 INKLRLPRKLLEKWVEEPFFDTAVVGCFVRLGVGKAPGLRGEPQYKV--------------CEIIGVGEYKHSYAL-GEFQTKKALLLRIGRNTRLWRMNVISNHRFTPDELNEWQSTMFAARQKIPSAEEISKRKARMRETV 273

[Close]

BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: UPI000A2A9D37 (RNA polymerase-associated protein RTF1 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9D37)

HSP 1 Score: 98.2 bits (243), Expect = 3.690e-17
Identity = 52/158 (32.91%), Postives = 89/158 (56.33%), Query Frame = 1

Query: 1348 TLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVTRHQYTVEHVAEMV 1821
            +++D+   R+ R  +EKW++ PFF +A+ GC+V++G+G    + VYR                E+  V +  + Y + G   T K L LR G+ +R FR++ +SN RITE EF+ WR+ C +  + VPT ++ + + A  KNAV  + Y  + + ++V
Sbjct:  293 SVDDLERIRLSRHKMEKWVHMPFFGDAVVGCYVRIGIGSCEGRPVYRA--------------AEIRDVVETAKVYNL-GSTKTNKGLKLRHGAQERVFRLEFVSNQRITETEFQRWREECEEHXIPVPTLEDIERKEADIKNAVN-YMYNEDDIEKIV 434

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: V5G7S9_ANOGL (RNA polymerase-associated protein (Fragment) n=3 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5G7S9_ANOGL)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-16
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1

Query: 1357 DINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAVT 1782
            D+N+ R+ R  LE++++ PFFD   KGCFVK+G+G  NN +VYR+               EV GV +  + Y + G   T K L +R GS++R FR++ ISN   TE E+  W +A A    ++PT  + + + A  K A++
Sbjct:  151 DLNLIRLSRHKLERFVHMPFFDRIAKGCFVKVGIGQHNNASVYRV--------------AEVIGVYETAKIYNL-GNTKTNKGLKVRHGSSERVFRLEFISNQEFTESEYLKWIEASAAAGNELPTKAKIEQKQADIKEAIS 277

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Match: F0YGR5_AURAN (Plus3 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR5_AURAN)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-15
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 1

Query: 1315 PAVAMAWESA--VTLNDINMCRVPRENLEKWLNEPFFDEALKGCFVKLGVGMRNNQAVYRMLRXXXXXXXXXXXXCEVEGVTKYKRQYTMPGGMPTTKALTLRFGSAKRDFRMDTISNHRITEGEFRAWRQACAKDRVKVPTPQECQARYARAKNAV 1779
            PA A   + A  V  + +   R+PR  LEKW+ EPFF++A+ GCFV+LGVG    +      +            CE+  V +YK  Y   G   T KAL LR G  +R +RM  ISNHR T+ E + W+     +R K+P+  E   R A+ + AV
Sbjct:  186 PATASDDDDAPHVACSALGKLRLPRSLLEKWVEEPFFEKAVVGCFVRLGVG----KIPASPSKAPGARGEPQYKVCEIISVDEYKHAYPF-GEFETRKALMLRIGRNQRLWRMSVISNHRFTDAELQEWQSIMRTERQKIPSVIEINRRKAQMRKAV 337

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348937 vs. uniprot
BLAST of jgi.p|Trimin1|348937 vs. uniprot

BLAST of jgi.p|Trimin1|348937 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A835YZB1_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A821GAD6_9BILA	2.280e-18	33.82	Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ...	[more]
A0A817M2X2_9BILA	2.520e-15	33.90	Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ...	[more]
A0A821XJI7_9BILA	4.820e-15	42.74	Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ...	[more]
A0A821DD16_9BILA	6.550e-15	42.74	Hypothetical protein n=9 Tax=Rotaria sp. Silwood1 ...	[more]
A0A800LTS4_9BACT	1.240e-13	31.41	Endonuclease n=1 Tax=candidate division Zixibacter...	[more]
A0A818T5S1_9BILA	1.430e-12	39.32	Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ...	[more]
A0A818X0F9_9BILA	1.210e-9	47.30	Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ...	[more]
UPI000831E21C	2.070e-9	36.89	endonuclease/exonuclease/phosphatase family protei...	[more]
A0A815LN04_ADIRI	2.680e-7	42.19	Hypothetical protein n=2 Tax=Adineta ricciae TaxID...	[more]

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BLAST of jgi.p|Trimin1|348937 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CH32_9STRA	0.000e+0	100.00	Plus-3 domain-containing protein n=1 Tax=Tribonema...	[more]
A0A6H5JFI3_9PHAE	1.770e-28	31.78	Plus3 domain-containing protein n=1 Tax=Ectocarpus...	[more]
D8LLT9_ECTSI	1.150e-26	38.78	Plus3 domain-containing protein (Fragment) n=1 Tax...	[more]
A0A7S2SHN1_9STRA	9.340e-19	26.38	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S4A0N2_9STRA	1.250e-18	40.56	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7S4A086_9STRA	5.760e-18	40.56	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A7S4A040_9STRA	1.630e-17	40.56	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
UPI000A2A9D37	3.690e-17	32.91	RNA polymerase-associated protein RTF1 homolog n=1...	[more]
V5G7S9_ANOGL	4.500e-16	36.62	RNA polymerase-associated protein (Fragment) n=3 T...	[more]
F0YGR5_AURAN	1.370e-15	36.94	Plus3 domain-containing protein n=1 Tax=Aureococcu...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:296138..300725 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348937\|estExt_Genemark1.C_Ctg_330043
Description	interspecies interaction between organisms
COG category	S
Max annot lvl	2\|Bacteria
EggNOG OGs	COG3021@1\|root,COG3021@2\|Bacteria
Evalue	6.82e-07
Seed ortholog	472759.Nhal_2983
Hectar predicted targeting category	other localisation
TranscriptId	349259
Track	FilteredModels1
ProteinId	348937

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348937	gene_5931	Tribonema minus UTEX_B_3156	gene	Contig_33 296138..300725 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348937	Trimin1\|348937\|estExt_Genemark1.C_Ctg_330043	Tribonema minus UTEX_B_3156	polypeptide	Contig_33 296138..300725 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5931_3	exon_5931_3	Tribonema minus UTEX_B_3156	exon	Contig_33 296138..296525 -
exon_5931_2	exon_5931_2	Tribonema minus UTEX_B_3156	exon	Contig_33 298633..299213 -
exon_5931_1	exon_5931_1	Tribonema minus UTEX_B_3156	exon	Contig_33 299850..300725 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5931	CDS_5931	Tribonema minus UTEX_B_3156	CDS	Contig_33 299850..300725 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_33:296138..300725-
coding sequence from alignment at Contig_33:296138..300725-

spliced messenger RNA

>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Trimin1|348937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1845bp|location=Sequence derived from alignment at Contig_33:296138..300725- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCCTGGCCCTCCCGGCTCTGCCATCAGCTTTGTTGGCGGTCCTGT
TGGCATGCCGCAACCGCCTGGCAGTTCAGGCGCACCAACTGCCACTGGAG
CCAAACCGGCAGTTGGCGACGGCAGCAGGGCCCCCCCCGCCCACGATCTG
CTGCACCACCCCGTGCTGGAGCAAGCTTTGGATCGCAGAGCCGCGGCGGG
CCTGCCAATGGGGTTTCCCGAAGGCCTGGGCCAGAACACGGGACTCAGGA
GGGGCCTCGAGTTCCCGGACTCGAGGACGTGCGTGCAGTATCTCAGAGAC
TACATGGTCGGCATAGGCAAGCGGCTGGCGACGGACCAGACGGGGGGCAA
GAGCAAGAGGTTCAAGTGCTCGGGCAACGGGTGCCCCTTCATCGTCAACG
TGACCAAGACCCGCCAGGGCATCTGGCGGGTCACCAACGTCATCCCGGAG
CACTCCGAGGAGTGCGACGGCGTGCCCATCGGCTCCAGGCCCCCCATCAT
CCTCCCCCCGCCGCGCACGAACCGCAAGACCGCCGCTGACGGCGAGGGCG
GCGGCGGCGCCAAACGCGGTCCCAAGCCCGGCGCGGCCGCGGCGAAAAAG
CGGCTGCGGGTGGAGGGAAAGGCAGGGGAGATGGCGCCGGGGCTGGCGGC
GATACAGCAGCTGCCGGCGCCGCCGGGCGTTGGTGGCGCCGTGGTGAAGC
TGCCGCAGCAGGGGGAAGGGGCGGCGGTGCGGAAGCGGGTGACGCTGATG
AGCTGGAACGTGTGGAAGATGGAGGGCGTGCCTGCGCTGTTCCCGCAGCG
CGCAGCGGCGTTCAAGGCGCTGCTGCAGACGTATGCGCCCGATGTCCTGT
GCGTGCAGGAGCTGCACCCCGTCACGAGCGCTGCTATCCGCCAGGCGCTG
CTCACACACGCCAGCACCGCCGATGGTGGCGCAGAGACGCCGCCGCCGCC
TCCCACGCCTGTCGCCATGCCCATCCTGCCGACAATGCCGCAAGTTGACC
CCTCAAAGCCGCCGCAGCTGGGCCTGCCGCCACTGCCGCCGCCGCAGCAG
CAGCAGCAGCCGCTGCCGCCGCCGGCAGGAGCGCCGCTGCAGCTGGGCGC
GCCGCCGCCGATGCAGCTGCCGATGCAGCCGCAGCAGCAGATGGTGGTGC
CGGCGCTGGGTGGCACGTCGCCGCCGCCACCTGCATCAGCAGCGCTCAAC
AATATGGCAGCGTTCAACGCGCCGGCGGTGCCGCCGCCGGGAGCGGCGAT
GGCGGCAGCTGCGGCGGCGGCGGCGGCAGCGGCGGTGGCCGATAGGCACG
TGAAGGGGGAAGAGACGGCGGCGGGGGACGAGGCTGCGGCGCAGCAGGAG
GGCGGTATCTTCTACAACACGAAGCTGTTTATACTGCACGCGGCAGGCGC
GGAGGAACTGAACCTGCCGGAGCACCCGCACCGCAAGCTGCACTACTGCG
TGCTCAAGATCGAGGCCACCATCCGCGTCATCACCATCCTGGCGGCGCTC
GCAACGCACACCTTCCCCTTCATACACGGCAACCACAACCCCGTCTTCCT
CCTGGGCGACTTCAACGAAGACTTCCACCCCCCGCGCCTCCTCTCCCAGG
CCATGTATCAGGACTGCTTCAGCGCCCTAGGGGTGCCCGCCCCCCACACG
CACCCTGCGAGGCCCTCTCACCCCAAGGAGGAGGAGAGGCCAGACAGGAC
CCTGGACTGGGTATTCTCGACCGGTCAGGCCAGGGCCGTGCTTGCTAGCG
TGGTTCGCGACTTTCGCGTGCCCGGATCACCCCCCGGGGAGGTGGCGGTG
CACCCCAGCGATCACTTCCCGGTGGTCGCGTGCTATGAAATTTGA

protein sequence of jgi.p|Trimin1|348937

>Trimin1|348937|estExt_Genemark1.C_Ctg_330043 ID=Trimin1|348937|estExt_Genemark1.C_Ctg_330043|Name=jgi.p|Trimin1|348937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=615bp
MGPGPPGSAISFVGGPVGMPQPPGSSGAPTATGAKPAVGDGSRAPPAHDL
LHHPVLEQALDRRAAAGLPMGFPEGLGQNTGLRRGLEFPDSRTCVQYLRD
YMVGIGKRLATDQTGGKSKRFKCSGNGCPFIVNVTKTRQGIWRVTNVIPE
HSEECDGVPIGSRPPIILPPPRTNRKTAADGEGGGGAKRGPKPGAAAAKK
RLRVEGKAGEMAPGLAAIQQLPAPPGVGGAVVKLPQQGEGAAVRKRVTLM
SWNVWKMEGVPALFPQRAAAFKALLQTYAPDVLCVQELHPVTSAAIRQAL
LTHASTADGGAETPPPPPTPVAMPILPTMPQVDPSKPPQLGLPPLPPPQQ
QQQPLPPPAGAPLQLGAPPPMQLPMQPQQQMVVPALGGTSPPPPASAALN
NMAAFNAPAVPPPGAAMAAAAAAAAAAAVADRHVKGEETAAGDEAAAQQE
GGIFYNTKLFILHAAGAEELNLPEHPHRKLHYCVLKIEATIRVITILAAL
ATHTFPFIHGNHNPVFLLGDFNEDFHPPRLLSQAMYQDCFSALGVPAPHT
HPARPSHPKEEERPDRTLDWVFSTGQARAVLASVVRDFRVPGSPPGEVAV
HPSDHFPVVACYEI*

mRNA from alignment at Contig_33:296138..300725-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Trimin1|348937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4588bp|location=Sequence derived from alignment at Contig_33:296138..300725- (Tribonema minus UTEX_B_3156 )
ATGGGGCCTGGCCCTCCCGGCTCTGCCATCAGCTTTGTTGGCGGTCCTGT
TGGCATGCCGCAACCGCCTGGCAGTTCAGGCGCACCAACTGCCACTGGAG
CCAAACCGGCAGTTGGCGACGGCAGCAGGGCCCCCCCCGCCCACGATCTG
CTGCACCACCCCGTGCTGGAGCAAGCTTTGGATCGCAGAGCCGCGGCGGG
CCTGCCAATGGGGTTTCCCGAAGGCCTGGGCCAGAACACGGGACTCAGGA
GGGGCCTCGAGTTCCCGGACTCGAGGACGTGCGTGCAGTATCTCAGAGAC
TACATGGTCGGCATAGGCAAGCGGCTGGCGACGGACCAGACGGGGGGCAA
GAGCAAGAGGTTCAAGTGCTCGGGCAACGGGTGCCCCTTCATCGTCAACG
TGACCAAGACCCGCCAGGGCATCTGGCGGGTCACCAACGTCATCCCGGAG
CACTCCGAGGAGTGCGACGGCGTGCCCATCGGCTCCAGGCCCCCCATCAT
CCTCCCCCCGCCGCGCACGAACCGCAAGACCGCCGCTGACGGCGAGGGCG
GCGGCGGCGCCAAACGCGGTCCCAAGCCCGGCGCGGCCGCGGCGAAAAAG
CGGCTGCGGGTGGAGGGAAAGGCAGGGGAGATGGCGCCGGGGCTGGCGGC
GATACAGCAGCTGCCGGCGCCGCCGGGCGTTGGTGGCGCCGTGGTGAAGC
TGCCGCAGCAGGGGGAAGGGGCGGCGGTGCGGAAGCGGGTGACGCTGATG
AGCTGGAACGTGTGGAAGATGGAGGGCGTGCCTGCGCTGTTCCCGCAGCG
CGCAGCGGCGTTCAAGGCGCTGCTGCAGACGTATGCGCCCGATGTCCTGT
GCGTGCAGGAGCTGCACCCCGTCACGGTGAGTTGGAGTTGGCGTTGGTGG
CGCGGGCGTGCGCCGCTGTCCGGTTTGCAGGTTGAAGGGTGTGCGCGCTC
TCGCAGCGTGCAGACGTGGCTTGTGTTTCAGGTGCCGTACTAGCATCTAT
GAAGCACATATGGAGGAGGCATTGCATAGAGTGGATGTTTGGGTTGGGAT
TGAAGCTGAGCTAAGGTAAGGGTCAGGATACCACTTAGGCAATCGGAACC
TTCCACGTGTGTGACGAGCTGCTGCTGCAGTGCGTGATCGCAGACGTGCC
GTCGCTGCTGCGCCGCACAACACGTATGTCCATCTTGTGCAATAGAGGTC
AGATTTACAGGTCTGCTGTGCTGTGTCTGCAGTTAGTGCAACACCTGTGC
AGCCAATGCTATTTGCGCCATGACAAGGCAATTTATTGAGTGTGGCGTCT
TTGATCAATTTGCATGAGTGACCAGCTGGCAGGCAACTTCCAATGATGCT
GGTATCACTGCCTAACAAGCGGCCTTGTGGCTTCCATGAGACGCCGCACT
CCCTTCCTTGCCGCTGAGTTTGCTGAATCGCCGAGTACACTGCACCACAG
CGCCGCAGCGCACCCCCCTCACCTGACCCCCCCCCCCCCCTCACCCCTTC
CCCCCTCTGCAGAGCGCTGCTATCCGCCAGGCGCTGCTCACACACGCCAG
CACCGCCGATGGTGGCGCAGAGACGCCGCCGCCGCCTCCCACGCCTGTCG
CCATGCCCATCCTGCCGACAATGCCGCAAGTTGACCCCTCAAAGCCGCCG
CAGCTGGGCCTGCCGCCACTGCCGCCGCCGCAGCAGCAGCAGCAGCCGCT
GCCGCCGCCGGCAGGAGCGCCGCTGCAGCTGGGCGCGCCGCCGCCGATGC
AGCTGCCGATGCAGCCGCAGCAGCAGATGGTGGTGCCGGCGCTGGGTGGC
ACGTCGCCGCCGCCACCTGCATCAGCAGCGCTCAACAATATGGCAGCGTT
CAACGCGCCGGCGGTGCCGCCGCCGGGAGCGGCGATGGCGGCAGCTGCGG
CGGCGGCGGCGGCAGCGGCGGTGGCCGATAGGCACGTGAAGGGGGAAGAG
ACGGCGGCGGGGGACGAGGCTGCGGCGCAGCAGGAGGGCGGTATCTTCTA
CAACACGAAGCTGTTTATACTGCACGCGGCAGGCGCGGAGGAACTGAACC
TGCCGGAGCACCCGCACCGCAAGCTGCACTACTGCGTGCTCAAGTGAGTG
GTTTTCTTTATTATTATGACTATGGGGGGATTGATGTGTGAATCGTGTTG
GGGGAGGGGGGGGCAGTGTCTCATAAACGCTGGCAGCTGAAGCATTGTCT
TCGACAGGTGTGCGCTGGAATTGTGTTATCATTTTAACATGTTGTATGAT
GTAGGCATGAATGCATCCGCAGCAGACCATCACCATAATTAGCACATACA
TACCATACTTCAACATAATGATCAAACTTCAACATAGCATCAACTAAGTG
TCACTTTCAAAGTGATCGCTTTCTGGTATGGCATCGCTGAGTGTCCTCTG
GTAGCATTGCACGCAGACGTCTGCGTCATACATTTGGGGAATGCTGCAGC
TCTTGTGTGTCAACGCCAATATCGAGGCCTCAGTCGAGGGCCACGTACGT
GTACCTCTGCTTGCTGTGAACTACAAACTACTGTCGTGTCGACGTTTGTG
ATGCATGTATCATGCCATGTGAGAGATTGAGGCCGGCGGTGCGCGCTTGG
CGTTAAGGTACTGCATGCATGTATGACACAGATCTAGCGTCAGGGTCACA
ATCAGGGTATTGCGACAAGCAGTGTGGAGGTCTATAAATCGATTGTCAAC
GACGCACTTGTAATGCAAGCCAGCTCGTGACACAGGCTGGGCTGCACGAT
GCGACACTTGAAGTTTGGGACGTTTGCGCCAAACTTCAAATTCACCCCAA
TGCGTCTCCCACAATGCAGTTGTGTTGCAGCAGTTACCGCCCAATCGCGC
TGCCGCGCTGCGATCAAGAGCGCTTTACACACATCGTCATTAAATTACAT
TAATGACCTTTCTGCGTTCTGGCGAGAAATGGCACACAAGGGCAATGTGC
CCCATTTTTTTCTGTCGCATTCATGATCGATAGCATTATGCACATTGTCA
TCACGGTCTTCCGCATTCTGACGTGTCGCGTGCACAGGCTTCGCGCTGAC
CCGAGTCAAGCAATGATGGTTGCCACTTGCCACCTGCCGTGGGTAGGGCA
CCCCCAAGAGGTGGAGACGGGCGTCAATCTCAGGTACATACTGGACTGTG
CTGTACTCACGTCTACTGTAACTGTACTATCGTGCTCGTGTTTTTTGTTT
CAGTCCAATTGGACTGCAACTGAAGTCCAGGTACTTCAGTTCTTGTTTTC
GTAGCAGCTACAACTTGGTCTTGTAAGTGCGACCATCTGCAATGAACTGG
AAACGGACGGGCCTCTAATTGGATTCCAGTCGGACTGGCGCATAGTGGCT
GGTATGAAAAACGAATCGTAGAGCTCTAGGTGCCAAGGTGTGGTTAGCCG
TCAAATTGAATGCCTTCCACAAATAATGTATGTTTCGTGCGCCTATGTGC
AGCTTGCAGCTTGCATTTGGGTCCTGCCATGGTTATAGCTATTGCTCAGA
AGGGTACAATAGGCTTTTCGTCAGCAGCAGCCCCAGTTTCAACTTGAGGC
TGCGGCGGCGCCACGCGCACGCGCTACGTTCATAGCAGCGCAGAGGTTTC
TTGTTTGCAGAGTGACAGAGTGGATTACAGAGTACTCGACTCTCAATACC
TAGGGTAGCAAAAGTCCAGTTTACTCTACGCTCGCACAACAACAGTTTTT
CAAGTAGAGCAGGAGTAGCCTCTCCATCTGCTGCCAAGTTTCTAGTCAAC
TGCGACTAAGCACTTGTTCTGGCTTGGCAGGTGCAGTACGCGAGCACGAC
AAGTATCCACCTACCCGAACAGGGTTTACTGACTCTGTTGGTCTACTCTA
GTTGCTCGATTTCACCCGTTGTCGTCCTGCCTATGGGTGGCTGCATTACT
GCTTGCGAGCTGCGACGTGTGCCAGCGAGCCCCTTCTAGTGGAAAAACCA
TTGAAAGTCGACCTAACCCTGACCCTAACCCTGCGCTTGCGATAGTTTCT
ACATGGCTTAAGCACGCCCTCAATTACTCACTGAATCACTGACTCACTCG
CTCTACATGCACGCCTCTCCGTCTTGATCACGCAAATCACTCACTCACTC
ACAATCACCATCCACGCGGCAGCGCTCGCCACGCACACCACATCTTCCCC
TTCCAATGACTCACTCACTCACTCACTCACCCACTCACTTGCTGCCACAG
GATCGAGGCCACCATCCGCGTCATCACCATCCTGGCGGCGCTCGCAACGC
ACACCTTCCCCTTCATACACGGCAACCACAACCCCGTCTTCCTCCTGGGC
GACTTCAACGAAGACTTCCACCCCCCGCGCCTCCTCTCCCAGGCCATGTA
TCAGGACTGCTTCAGCGCCCTAGGGGTGCCCGCCCCCCACACGCACCCTG
CGAGGCCCTCTCACCCCAAGGAGGAGGAGAGGCCAGACAGGACCCTGGAC
TGGGTATTCTCGACCGGTCAGGCCAGGGCCGTGCTTGCTAGCGTGGTTCG
CGACTTTCGCGTGCCCGGATCACCCCCCGGGGAGGTGGCGGTGCACCCCA
GCGATCACTTCCCGGTGGTCGCGTGCTATGAAATTTGA

Coding sequence (CDS) from alignment at Contig_33:296138..300725-

>mRNA_5931 ID=mRNA_5931|Name=jgi.p|Trimin1|348937|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1845bp|location=Sequence derived from alignment at Contig_33:296138..300725- (Tribonema minus UTEX_B_3156 )
ATGGGGCCTGGCCCTCCCGGCTCTGCCATCAGCTTTGTTGGCGGTCCTGT
TGGCATGCCGCAACCGCCTGGCAGTTCAGGCGCACCAACTGCCACTGGAG
CCAAACCGGCAGTTGGCGACGGCAGCAGGGCCCCCCCCGCCCACGATCTG
CTGCACCACCCCGTGCTGGAGCAAGCTTTGGATCGCAGAGCCGCGGCGGG
CCTGCCAATGGGGTTTCCCGAAGGCCTGGGCCAGAACACGGGACTCAGGA
GGGGCCTCGAGTTCCCGGACTCGAGGACGTGCGTGCAGTATCTCAGAGAC
TACATGGTCGGCATAGGCAAGCGGCTGGCGACGGACCAGACGGGGGGCAA
GAGCAAGAGGTTCAAGTGCTCGGGCAACGGGTGCCCCTTCATCGTCAACG
TGACCAAGACCCGCCAGGGCATCTGGCGGGTCACCAACGTCATCCCGGAG
CACTCCGAGGAGTGCGACGGCGTGCCCATCGGCTCCAGGCCCCCCATCAT
CCTCCCCCCGCCGCGCACGAACCGCAAGACCGCCGCTGACGGCGAGGGCG
GCGGCGGCGCCAAACGCGGTCCCAAGCCCGGCGCGGCCGCGGCGAAAAAG
CGGCTGCGGGTGGAGGGAAAGGCAGGGGAGATGGCGCCGGGGCTGGCGGC
GATACAGCAGCTGCCGGCGCCGCCGGGCGTTGGTGGCGCCGTGGTGAAGC
TGCCGCAGCAGGGGGAAGGGGCGGCGGTGCGGAAGCGGGTGACGCTGATG
AGCTGGAACGTGTGGAAGATGGAGGGCGTGCCTGCGCTGTTCCCGCAGCG
CGCAGCGGCGTTCAAGGCGCTGCTGCAGACGTATGCGCCCGATGTCCTGT
GCGTGCAGGAGCTGCACCCCGTCACGAGCGCTGCTATCCGCCAGGCGCTG
CTCACACACGCCAGCACCGCCGATGGTGGCGCAGAGACGCCGCCGCCGCC
TCCCACGCCTGTCGCCATGCCCATCCTGCCGACAATGCCGCAAGTTGACC
CCTCAAAGCCGCCGCAGCTGGGCCTGCCGCCACTGCCGCCGCCGCAGCAG
CAGCAGCAGCCGCTGCCGCCGCCGGCAGGAGCGCCGCTGCAGCTGGGCGC
GCCGCCGCCGATGCAGCTGCCGATGCAGCCGCAGCAGCAGATGGTGGTGC
CGGCGCTGGGTGGCACGTCGCCGCCGCCACCTGCATCAGCAGCGCTCAAC
AATATGGCAGCGTTCAACGCGCCGGCGGTGCCGCCGCCGGGAGCGGCGAT
GGCGGCAGCTGCGGCGGCGGCGGCGGCAGCGGCGGTGGCCGATAGGCACG
TGAAGGGGGAAGAGACGGCGGCGGGGGACGAGGCTGCGGCGCAGCAGGAG
GGCGGTATCTTCTACAACACGAAGCTGTTTATACTGCACGCGGCAGGCGC
GGAGGAACTGAACCTGCCGGAGCACCCGCACCGCAAGCTGCACTACTGCG
TGCTCAAGATCGAGGCCACCATCCGCGTCATCACCATCCTGGCGGCGCTC
GCAACGCACACCTTCCCCTTCATACACGGCAACCACAACCCCGTCTTCCT
CCTGGGCGACTTCAACGAAGACTTCCACCCCCCGCGCCTCCTCTCCCAGG
CCATGTATCAGGACTGCTTCAGCGCCCTAGGGGTGCCCGCCCCCCACACG
CACCCTGCGAGGCCCTCTCACCCCAAGGAGGAGGAGAGGCCAGACAGGAC
CCTGGACTGGGTATTCTCGACCGGTCAGGCCAGGGCCGTGCTTGCTAGCG
TGGTTCGCGACTTTCGCGTGCCCGGATCACCCCCCGGGGAGGTGGCGGTG
CACCCCAGCGATCACTTCCCGGTGGTCGCGTGCTATGAAATTTGA