mRNA_5924 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348934
Unique NamemRNA_5924
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348934 vs. uniprot
Match: A0A835YWX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWX6_9STRA)

HSP 1 Score: 398 bits (1023), Expect = 4.200e-138
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 3 
Query:  162 MGEASVSRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKEFTAAGRPATP 776
            MGEASVSRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKEFTAAGRPATP
Sbjct:    1 MGEASVSRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKEFTAAGRPATP 205
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BLAST of jgi.p|Trimin1|348934 vs. uniprot
Match: A0A6H5JS60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS60_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.130e-36
Identity = 76/192 (39.58%), Postives = 114/192 (59.38%), Query Frame = 3 
Query:  180 SRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDE---ALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKE 746
            SR  +  +V+ GGA    TA++     +A A  Q+ E+  A +M+CK V +P+ +Y K  QFD+ARTN NYITR   ++K I   I++   + DD    + +E+A D+A   ++ F+N+DSS+YT+IFIP   +G LP G++KY  QA  +YD    +LD +I L P + +  A     A+   LP FLFKE
Sbjct:   67 SRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVDDPDTASFIEKAFDMAQEVEALFTNFDSSVYTIIFIPADAEGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPGFLFKE 258
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BLAST of jgi.p|Trimin1|348934 vs. uniprot
Match: D7FL66_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL66_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.170e-35
Identity = 78/195 (40.00%), Postives = 115/195 (58.97%), Query Frame = 3 
Query:  162 MGEASVSRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKE 746
            M  A  SR  +  +V+ GGA    TA++     +A A  Q+ E+  A +M+CK V +P+ +Y K  QFD+ARTN NYITR   ++K I   I++   + +D   +E+A D+A   ++ F+N+DSS+YT+IFIP   DG LP G++KY  QA  +YD    +LD +I L P + +  A     A+   LP FLFKE
Sbjct:   63 MSLAGSSRGEYVKTVLGGGALGLATAFSPALSKRAEAAAQSLEELEADIMICKEVFKPTLQYLKAEQFDAARTNTNYITRFFNLKKKIDSFIVQASDVVEDPDTMEKAFDMAQEVEALFTNFDSSVYTIIFIPADADGVLPPGAEKYLKQAYGFYDDINKVLDFYIDLVPPETKAAAEKLLPAKRAPLPSFLFKE 257
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BLAST of jgi.p|Trimin1|348934 vs. uniprot
Match: A0A7S0BNM4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BNM4_9RHOD)

HSP 1 Score: 79.7 bits (195), Expect = 5.610e-14
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 3 
Query:  264 AAAPEQTFEDAVATLMVCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEAR 713
            AA      + ++  +  C+ V+ P  KY +  ++D ARTN+NY TR L ++  + KV  E   I DD     E  ++ A  ++ F+  D+S+YT IFIP  E G  P+  +KY  QA +YY+Q++ ML  +++L P+D +  A  +A  R
Sbjct:   57 AATKMSPIDTSLLRICECERVMRPVRKYIEKGEWDRARTNINYCTRNLRLKTNM-KVFSE---IMDDPL---EGIEIMAELENVFTQMDASVYTPIFIPSDE-GISPE-QEKYQKQAFLYYEQAMRMLGDYLALVPQDKKVGAFREAAKR 197
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BLAST of jgi.p|Trimin1|348934 vs. uniprot
Match: A0A2V3IGD1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGD1_9FLOR)

HSP 1 Score: 77.4 bits (189), Expect = 7.190e-14
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:  327 LEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICDDEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKEL 725
            + P  +Y     +D  RTNVNY TR L +RK + KV  +   +  D+    +A D+ A  D+T +  D+S+YT +FIP  +  S+ +   KY  QA  YY  ++  ++ F+S  P DV ERA++KA     E+
Sbjct:    1 MAPVRRYIDEGAWDKGRTNVNYCTRMLALRKNMKKVAEQ---LSGDDYY--DALDITADLDNTMTQLDASLYTPLFIPADDGVSVEQA--KYQRQASEYYSNALDYIESFLSKLPTDVLERAQSKAATAKYEI 126
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348934 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YWX6_9STRA4.200e-138100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JS60_9PHAE1.130e-3639.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL66_ECTSI2.170e-3540.00TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0BNM4_9RHOD5.610e-1434.67Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IGD1_9FLOR7.190e-1435.34Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:267467..269997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348934|estExt_Genemark1.C_Ctg_330037
KEGG TC2.A.7
BRITEko00000,ko02000
KEGG koko:K15280
DescriptionUDP-glucose transmembrane transport
COG categoryEG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0697@1|root,KOG1443@2759|Eukaryota
Evalue4.73e-37
Seed ortholog2880.D7FL66
Hectar predicted targeting categorysignal peptide
TranscriptId349256
TrackFilteredModels1
ProteinId348934
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348934gene_5924Tribonema minus UTEX_B_3156 geneContig_33 267467..269997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348934Trimin1|348934|estExt_Genemark1.C_Ctg_330037Tribonema minus UTEX_B_3156 polypeptideContig_33 267669..269836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5924_3exon_5924_3Tribonema minus UTEX_B_3156 exonContig_33 267467..267902 -
exon_5924_2exon_5924_2Tribonema minus UTEX_B_3156 exonContig_33 268384..268608 -
exon_5924_1exon_5924_1Tribonema minus UTEX_B_3156 exonContig_33 269678..269997 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5924UTR3_5924Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 267467..267668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5924CDS_5924Tribonema minus UTEX_B_3156 CDSContig_33 269678..269836 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5924UTR5_5924Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 269837..269997 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5924 ID=mRNA_5924|Name=jgi.p|Trimin1|348934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=981bp|location=Sequence derived from alignment at Contig_33:267467..269997- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGCTGCGTCTCTCGTGTGCTGCGTGCTGTGGCAAGGAGTGGCTGCCTTC
ATTGGGCAGCCACTGTTTGGACCAGCAACAGCAGCACAACGAACTGCATT
GTCTGGACAGGGCAAATTATTGCCTTCTCATGCCAGGTCGCAGGCGGCAG
AGAGGCTGTGCATGGGCGAGGCTTCAGTGAGCAGGAGGTCATTCACGAGC
TCTGTGGTGCTCGGTGGAGCAGCAGCTGCTTTCACCGCCTGGACACATCC
CAAGGTGGCGCAAGCTGCTGCTCCTGAGCAGACTTTCGAAGATGCAGTGG
CGACGCTGATGGTTTGCAAGGCAGTGCTGGAGCCCAGCCACAAGTACTTC
AAGTTGAACCAGTTTGATTCCGCGCGCACAAACGTCAACTACATCACCCG
ACAGCTTGGGGTCCGCAAGGCCATAGGCAAAGTGATCATCGAAGGCGGCG
CGATTTGCGATGATGAAGCGCTCGTTGAGGAAGCTTCAGATCTGGCCGCG
ACGGCGGACTCTACGTTCAGCAACTACGACTCCAGCATTTACACGGTCAT
CTTCATCCCCCCCGGGGAGGACGGCTCGCTGCCCAAGGGCTCCGACAAGT
ACTTCAACCAAGCCGATGTCTACTATGACCAGAGCGTGCACATGCTGGAC
GTCTTCATTTCGCTAGCGCCAGAGGATGTACGCGAGCGTGCGCGCGCAAA
AGCGGAGGCGCGCGTTAAGGAGCTGCCGCGATTTTTGTTCAAGGAGTTCA
CGGCGGCGGGCAGGCCGGCCACGCCGTGACGGTGACAGATGTAACTGCCG
TAACTGGCAGTGGTAAATGTAACGGCATTGTCATCTACTGCGCTCTTAGT
GTTGACATGCCCGTGCCAGTGGGTATGGGGAGCTGTAAATGTGCAGGTTT
AGATCAACAGTAGAGAGCCGCATTGACCAGTGAAATACAATGGAACACAT
GCCAGATGCTGGCACCCCACCCATGCTGGCG
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protein sequence of jgi.p|Trimin1|348934

>Trimin1|348934|estExt_Genemark1.C_Ctg_330037 ID=Trimin1|348934|estExt_Genemark1.C_Ctg_330037|Name=jgi.p|Trimin1|348934|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp
MGEASVSRRSFTSSVVLGGAAAAFTAWTHPKVAQAAAPEQTFEDAVATLM
VCKAVLEPSHKYFKLNQFDSARTNVNYITRQLGVRKAIGKVIIEGGAICD
DEALVEEASDLAATADSTFSNYDSSIYTVIFIPPGEDGSLPKGSDKYFNQ
ADVYYDQSVHMLDVFISLAPEDVRERARAKAEARVKELPRFLFKEFTAAG
RPATP*
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mRNA from alignment at Contig_33:267467..269997-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5924 ID=mRNA_5924|Name=jgi.p|Trimin1|348934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2531bp|location=Sequence derived from alignment at Contig_33:267467..269997- (Tribonema minus UTEX_B_3156 )
TGGCTGCGTCTCTCGTGTGCTGCGTGCTGTGGCAAGGAGTGGCTGCCTTC
ATTGGGCAGCCACTGTTTGGACCAGCAACAGCAGCACAACGAACTGCATT
GTCTGGACAGGGCAAATTATTGCCTTCTCATGCCAGGTCGCAGGCGGCAG
AGAGGCTGTGCATGGGCGAGGCTTCAGTGAGCAGGAGGTCATTCACGAGC
TCTGTGGTGCTCGGTGGAGCAGCAGCTGCTTTCACCGCCTGGACACATCC
CAAGGTGGCGCAAGCTGCTGCTCCTGAGCAGACTTTCGAAGATGCAGTGG
CGACGCTGATGGTTTGCAAGGTCAGTGTGTCAATGTGATGCATCTTGCAT
ACAAGATATCGTGAGAAGTGAAGCAAGCAGAAGATCGAATTGCTAATACG
GCCTTCAAAGTGTTAGCCGTCTCATGAGCAGCACTCTTGTAGTGATGTGA
TTGACTGCACAAGCAGTGCACAGCAGCGCCATGAAAATGAGAGGGTGACA
CTTCGACATGCCCCATTTTTTTCTCCTCTTTCGATACAATGTGCAACAAC
GTCTTGTCTGGATCGCTTGATCACTTGAATTCAGCCTAAGCTTCTGAGAC
GCTCAAGTTACTGAGTCAAGTACACTTTTCTGGCACTGCACACGAGTTTC
CGCCAATTCAACACCTGAGTGCCCCACATTGAAGTTCAATTCTCGCCAAT
GTTGACTGACAGCAGCTAGGTCAAACTGCAGAAGATGCTACATTGCCCGC
CTGGTACTCCCTGAACTGCTCGATAGAGACACTGCTATTGCGCCGCGCTA
AGAATGTCCAGAGCCCAGGGCATGTCGCACAGTGATGAGTGTCGTGCAGT
AGGTCATGCTTGTTCTTGAAGGTGCAGGGGTTCATCAGATCAATGGTGCT
TTGGCACACCGGCTCATGACTTCTAGACTCATGAGTCATGACTCCCATAC
ACGTGAGTCAGGACTCCTGCTCCGCTTCAGCTGCCAGTGATGGTAGTGCT
TGGATCGTAAACAGTTGCCACATTATGCTGCAGCAGCCTACCTTTCGACA
GAGGTTTTCGTCAGCGCTTACGACAAATGCGTGTCACCGGCCAACGCGCC
AACACCAGCACGCCCTTGAAGTGACCAAATCAAAATGGTATACATCGTGA
AGCGTGAAGGGCTTCTGCAAGTGTCAGAACACATTCATCAGGCACCTTTG
GTGGAGCCCAGCCACAAATGCGTGCTGACTAGAAAGGCATTGCTTCGCTT
GATTTTCCATTATGTATTCTAGTTACAGTGCAAATGTACTACTGTTGTGC
TCGCAACTTCAAGTTCAAGCACAACCGCACTTCAACAGCTGGTGACCTTC
GCAATCACTCCGTTTTTGTCTCTGCTGCTGCCGATGCAGGCAGTGCTGGA
GCCCAGCCACAAGTACTTCAAGTTGAACCAGTTTGATTCCGCGCGCACAA
ACGTCAACTACATCACCCGACAGCTTGGGGTCCGCAAGGCCATAGGCAAA
GTGATCATCGAAGGCGGCGCGATTTGCGATGATGAAGCGCTCGTTGAGGA
AGCTTCAGATCTGGCCGCGACGGCGGACTCTACGTTCAGCAACTACGACT
CCAGCATTTACACGGTGAGATGACATGAGCACTGCTGCAATGGGTCATAG
TGAGCATGCGTTCAGCGAATGCTGCAGCTGTGTAGCAAACGCACGCGTTG
GCCAACATTGCTGCACGTGTGGATTTTGTGTGTGGATTAATCAGACATGG
CTGCGAGGCTGCAATTGCACATGCGTGCACTTGCTGACGCAATGAACGGC
TCGGCTCAGACTTAGCGGAGGCGGCTTGCTGCTGCTGAATGCTGCTGCAA
GTGGGATTGCCATCGCTGCTGAGTAGCCAGTACGAGTTCACTTGTCTTGT
ATGCTCACTACTGACACTGCAGCCTACACTCCACTGCCACTGCTGTGTGT
GTGCTACCCCTGTGTCAGGCACAATGCTCTTGCAGCCCAAGCCCCTGCTG
AATTCCGCAGAAATATAATGCTGAGCGCTGCTGATGCATTTTTGATGACC
ACACACCCCATTGCTGAGCACTGCGATGCCTGCCCCCCCCCCCAGGTCAT
CTTCATCCCCCCCGGGGAGGACGGCTCGCTGCCCAAGGGCTCCGACAAGT
ACTTCAACCAAGCCGATGTCTACTATGACCAGAGCGTGCACATGCTGGAC
GTCTTCATTTCGCTAGCGCCAGAGGATGTACGCGAGCGTGCGCGCGCAAA
AGCGGAGGCGCGCGTTAAGGAGCTGCCGCGATTTTTGTTCAAGGAGTTCA
CGGCGGCGGGCAGGCCGGCCACGCCGTGACGGTGACAGATGTAACTGCCG
TAACTGGCAGTGGTAAATGTAACGGCATTGTCATCTACTGCGCTCTTAGT
GTTGACATGCCCGTGCCAGTGGGTATGGGGAGCTGTAAATGTGCAGGTTT
AGATCAACAGTAGAGAGCCGCATTGACCAGTGAAATACAATGGAACACAT
GCCAGATGCTGGCACCCCACCCATGCTGGCG
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Coding sequence (CDS) from alignment at Contig_33:267467..269997-

>mRNA_5924 ID=mRNA_5924|Name=jgi.p|Trimin1|348934|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_33:267467..269997- (Tribonema minus UTEX_B_3156 )
ATGGGCGAGGCTTCAGTGAGCAGGAGGTCATTCACGAGCTCTGTGGTGCT
CGGTGGAGCAGCAGCTGCTTTCACCGCCTGGACACATCCCAAGGTGGCGC
AAGCTGCTGCTCCTGAGCAGACTTTCGAAGATGCAGTGGCGACGCTGATG
GTTTGCAAGGCAGTGCTGGAGCCCAGCCACAAGTACTTCAAGTTGAACCA
GTTTGATTCCGCGCGCACAAACGTCAACTACATCACCCGACAGCTTGGGG
TCCGCAAGGCCATAGGCAAAGTGATCATCGAAGGCGGCGCGATTTGCGAT
GATGAAGCGCTCGTTGAGGAAGCTTCAGATCTGGCCGCGACGGCGGACTC
TACGTTCAGCAACTACGACTCCAGCATTTACACGGTCATCTTCATCCCCC
CCGGGGAGGACGGCTCGCTGCCCAAGGGCTCCGACAAGTACTTCAACCAA
GCCGATGTCTACTATGACCAGAGCGTGCACATGCTGGACGTCTTCATTTC
GCTAGCGCCAGAGGATGTACGCGAGCGTGCGCGCGCAAAAGCGGAGGCGC
GCGTTAAGGAGCTGCCGCGATTTTTGTTCAAGGAGTTCACGGCGGCGGGC
AGGCCGGCCACGCCGTGA
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