mRNA_5919 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|58906
Unique Name	mRNA_5919
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|58906 vs. uniprot
Match: A0A836CEH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEH7_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.440e-63
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 3

Query:  141 MSGKQSWADEDSSDDEPVAAAPAPKPKTIDWAADSDSEEEPEVREEREPSDPLGLNSSXXXXXXXXXXXXXXXXXXXXGTSDEGDEGKPKADAPKPFEQLSKKERKALKQKELADLEALLGEFGVDKSAIKEQDGA 548
            MSGKQSWADEDSSDDEPVAAAPAPKPKTIDWAADSDSEEEPEVREEREPSDPLGLNSSXXXXXXXXXXXXXXXXXXXXGTSDEGDEGKPKADAPKPFEQLSKKERKALKQKELADLEALLGEFGVDKSAIKEQDGA
Sbjct:    1 MSGKQSWADEDSSDDEPVAAAPAPKPKTIDWAADSDSEEEPEVREEREPSDPLGLNSSXXXXXXXXXXXXXXXXXXXXGTSDEGDEGKPKADAPKPFEQLSKKERKALKQKELADLEALLGEFGVDKSAIKEQDGA 136

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|58906 vs. uniprot

BLAST of jgi.p|Trimin1|58906 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CEH7_9STRA	3.440e-63	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_33	contig	Contig_33:234239..238627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|58906\|CE58905_3944
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-03_004190.1
TranscriptId	59228
Track	FilteredModels1
ProteinId	58906

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|58906	gene_5919	Tribonema minus UTEX_B_3156	gene	Contig_33 234239..238627 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|58906	Trimin1\|58906\|CE58905_3944	Tribonema minus UTEX_B_3156	polypeptide	Contig_33 234379..238501 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5919_1	exon_5919_1	Tribonema minus UTEX_B_3156	exon	Contig_33 234239..234488 +
exon_5919_2	exon_5919_2	Tribonema minus UTEX_B_3156	exon	Contig_33 235748..235866 +
exon_5919_3	exon_5919_3	Tribonema minus UTEX_B_3156	exon	Contig_33 237262..237621 +
exon_5919_4	exon_5919_4	Tribonema minus UTEX_B_3156	exon	Contig_33 238311..238627 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_5919	UTR5_5919	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_33 234239..234378 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5919	CDS_5919	Tribonema minus UTEX_B_3156	CDS	Contig_33 234379..234488 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5919	UTR3_5919	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_33 238502..238627 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_33:234239..238627+
coding sequence from alignment at Contig_33:234239..238627+

spliced messenger RNA

>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Trimin1|58906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1046bp|location=Sequence derived from alignment at Contig_33:234239..238627+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGGAGAAGCCACCGCTTCTGCTTCTTCCAGCGCCTCGCGCAAGCTGCGC
AAGTAAGGTGCATTAATTGCAAGTCGCGGAGCCCACACGCAACCCCAATC
AGAAAAAGCAGGCAGTCTGGAGAGCACCTAGGCGCGGACCATGAGCGGGA
AGCAGTCGTGGGCGGACGAGGACTCTTCAGATGACGAGCCTGTGGCGGCT
GCGCCGGCACCTAAGCCAAAAACGATCGATTGGGCAGCGGACTCTGATAG
TGAGGAGGAGCCGGAGGTTCGCGAGGAGCGTGAGCCCTCTGACCCCTTGG
GCCTGAACAGCTCTGATGAGGAGGAGGAGAGCGATGAGGAATATGAGGAG
CCAACCGAACAGCCTGCAGCAGGCGGCACCAGCGACGAGGGCGACGAAGG
CAAGCCCAAGGCAGACGCCCCCAAGCCCTTTGAACAGCTCTCCAAGAAAG
AGCGCAAGGCCCTCAAGCAGAAGGAGCTGGCGGACCTGGAGGCGCTGCTC
GGCGAGTTTGGCGTTGACAAGTCCGCTATTAAGGAGCAGGATGGCGCCGC
CGCTGCCGCCGCTGCTGCTGCCGGCGAGGAGGATGCGGGCGGCGAAGCCA
ACGGCGGCGGCGACGCTGGCAAGAAGAAAAAGAAGAAGAAGAAGCCGGTG
CCCGGCGCGGCGGTGAATGGAAAGGCGGCGGAGCCTGCGGAGGCTGCTGC
GCCCGTGCCGGCGGCGGCTGCAGCTGCAGAGGGCGTGCTGCCACCATCCG
CAGCAGCGCTCAAGCTCAAGGCGGCGGCCGCAAAGAAGAAGGCAGCCGCC
AGCAAGAGCAGCGCGGCGGCAGCGGCAGCCGCGGCGGCTGCCAAGGAGGC
TGCTGCGGAGAAGAAGAAGAAGGGCAAGAGCAAGGACAAGGCGCACTACA
ACCAGGCTCCCACACGATGATAGTGTGTGTTGCTTCGGGGTTACTGCGGG
GTTGCACGAGCTAGAGGGATGGTGGGGGCTACCTGCTTCACAGCTCTGTG
CGTGTAAGGGTGGGAGAGGGGGAAGATCGCACCGAGGTGACTCTCC

protein sequence of jgi.p|Trimin1|58906

>Trimin1|58906|CE58905_3944 ID=Trimin1|58906|CE58905_3944|Name=jgi.p|Trimin1|58906|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=260bp
MSGKQSWADEDSSDDEPVAAAPAPKPKTIDWAADSDSEEEPEVREEREPS
DPLGLNSSDEEEESDEEYEEPTEQPAAGGTSDEGDEGKPKADAPKPFEQL
SKKERKALKQKELADLEALLGEFGVDKSAIKEQDGAAAAAAAAAGEEDAG
GEANGGGDAGKKKKKKKKPVPGAAVNGKAAEPAEAAAPVPAAAAAAEGVL
PPSAAALKLKAAAAKKKAAASKSSAAAAAAAAAAKEAAAEKKKKGKSKDK
AHYNQAPTR*

mRNA from alignment at Contig_33:234239..238627+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Trimin1|58906|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4389bp|location=Sequence derived from alignment at Contig_33:234239..238627+ (Tribonema minus UTEX_B_3156 )
CCGGAGAAGCCACCGCTTCTGCTTCTTCCAGCGCCTCGCGCAAGCTGCGC
AAGTAAGGTGCATTAATTGCAAGTCGCGGAGCCCACACGCAACCCCAATC
AGAAAAAGCAGGCAGTCTGGAGAGCACCTAGGCGCGGACCATGAGCGGGA
AGCAGTCGTGGGCGGACGAGGACTCTTCAGATGACGAGCCTGTGGCGGCT
GCGCCGGCACCTAAGCCAAAAACGATCGATTGGGCAGCGGACTCTGATAG
GTGAGGTTGCCGGCAGCGTCTGCTTACTAGCTGTCGTCAGCAAACTTTCA
TGATTTCTTGGCTGAATCCTAGCTTTGGCTTCAGAACATCGTGCGAATTC
AGGCGTAGCGCTGCACATGACGTGAAACATTGTCAGCGCTTAGACTGCTC
CAGCATCATGAACAGTGCGCATGCTTCAACAACGTTGTTGCCAGCAGGCT
TAGCTCAATTTGTGCCGTCGCAGGGTTAAGGATTGCCATTATGCTGTCAG
GGTACGATAGCATGTCGCGGCTCCTGTCAGCTGCAGAAAAACAGTTGCTT
TCTAGATGATTGCAACTTGATGTTGAAGCCACGGTGCCTGCGACACATCA
TTTGGAAGTTCCAGAACAGGTTTGTTTTTCATTGCGCATGCATAAGCTAC
TGATTGCGTGCATGTGTGTACCCTTCACACTGACTTGCGCTTCTGCATAT
GAACGAGGAAGCGAAGTCACTTCTTCGTCTGTGTCTTAAGTTGGTCTGAG
TTCACCACACTGGGTGCAGCTGCACTGTACAGCTGTACTGTACTGCCAGC
GCGCGCCACTGACACTTCTGACACAGTACCTGTTGTTGGTTTTTATTATG
TCCATTGATGACGTTATCCTGCTCAGCATTTGAACAAGGAATGATGTTGA
CGCACTGCAAGTTGCTCATCTGGCACTGCTGTGCCTAGACCGATGCACTG
TGATGCTGTGCTGTGGTTGCGTGGGGTGCAACTTCCCCTCGCTGACTGCA
TCGAACACAAATGCATATATGTTGTATGATCATGTGTGGCAGTGCCGCCC
TGGTTGCATCACGCCACTCTTCCTGACCATGGCCGCATGAGTACGACTTG
CAAGCGCCGCCAGGTATACCGCTACTAGTTTTTCAGTGTGCCGTTGTCGC
TGCAGCTGTCACCTGTGTATTCAATTGGCCACTGGCTGCTTGTCCACTTG
GTGGCGCAGTTGTGGCAGTTGACAGTGCCGTTTTTTGTGCATGCCTGGAA
GGGTCTTTAGACGTGTGATGACAGCCTAAGGCCTCATGAGTTTCACGTGC
AAACGACGCCATCTCTGCAGGCAACTTGGCTAGAGACTTAGCCGCAATAC
AGCTGCTGCTCTGTGCATGGTATGCACAAAGGCATGTATGTATGATAGAG
CAGTTAACATTAACGCTTGTGATGGCACAAAGGCGGCTCTTGCTCTTGCG
CTTGCTCTTGGCTAACGACCACTTGTGTGACACGCTGTTCTCTTTTTTTT
CTGCTGCAGTGAGGAGGAGCCGGAGGTTCGCGAGGAGCGTGAGCCCTCTG
ACCCCTTGGGCCTGAACAGCTCTGATGAGGAGGAGGAGAGCGATGAGGAA
TATGAGGAGCCAACCGAACAGCCTGCAGGTAATACTACTAGCAAACTAAC
ACATAATACTCAGATATGTTGGTCCATGTGCAGTGCGCTGCCAGCTTCAT
GCGATTGCTGCGGACGTGCGTCAAGCACATACATACATGCCCTCTCTACA
TACCACCTTCCTGCTTTGGATGTGGAGTGGAGGGCAGACGTCAGACTGCA
GGTGCGTGTTGAGCACTGAGGTAGCGGCTGTGTGCTAAGCGCTGTATCTT
CCGCCCGTGCCATTGCAATGGCTGGAGTGTCCTACAATGCGCGTAGTCCC
TGAGTTTTGACTGCAGCGCCCCTGGATCGTGTGTAATCTACGCCTGAGCA
CTGCTGAAGTACCATACCTACCTACCGCGCACGGTGCTGCATCACCCATG
GCAAAAATTGACCCGGCCATTGTAGAGAGGCAATGACAGGTCTTGCAAGG
AACACCATATCCGGCGTTGCATAACTTGCTGGTGCCTGATTGCTGGAGGT
GATGGCAGCTCTCCCTAAACCGTCATGACAGCGTATGTTGCGGACCGTGA
TGTTGTTCGGCATGAGATCAGATTGTGGGTACATGCTTAGGCTACAAACC
CCGCACCGCCTGCGTCGCGGTGAATGAGAATGTGTTTGCACTTCTGCAGG
ATCATACGCTGGTGGTGACCATGTTATCACTGGCCTTCAGTGGCTGCCAC
AGGCATGCCACACTCGATGGAGTGCAGTGTCACCATGCCGCATTCGGGAA
ATTCAACGAATGCCGCTTCAAAAGTAGGATGTGAACATGATGAGGTATGC
GGGCGATGGTGATGCTAGAACATCTCAGGGGTAGGATTGAGGTTAAGGTT
AGGGTATTTGGGTTAAATTGAAATTATGTGTGGATGCAGCAGCCTGAGCA
CTGTTGCATGGCTGGTGCCCTCTCTGGCATGATCTGTGTGGTGCACTTGC
TGCAGTAGTGCCCTGCGAAGTACGCTGGCATTCAACACAACCGCCTGCAT
CAAACTTCAAGTTGAAGCTGACCATACTGCACAAAAGTGAACCTGCCCCC
CCCCCCCACCATCGAAAGTGGTTGTGCTCATCCTGATGATGGGGACGCAA
GGTGCAATCCCTCAAACCAGAAAAGGCCATAGACTTGCAGTTCTTTGTGT
TGCCCTTTCATCTGAACACCACTTGCACCATCGACATTCGCAAGTCACAG
GTGGCAGCTTGACCACTGGATTTAGGGACAGAGGCTGAAGTCCTCAGGAC
TTGAGACAGGACAAGCGCCCTTATGCTTGACTGCCTCCTCCATGCTTGCA
CAATCCGGACCCTACGGTCAACGTGTTGAATTCGTGCGCTCAACTTCATG
AGCTGTACTTTGTAAACAAGTCCTTCAAACAATCATCTCACGCGGTTGAG
CCGTGCACCCCCCTGCCCTTCAGCAGGCGGCACCAGCGACGAGGGCGACG
AAGGCAAGCCCAAGGCAGACGCCCCCAAGCCCTTTGAACAGCTCTCCAAG
AAAGAGCGCAAGGCCCTCAAGCAGAAGGAGCTGGCGGACCTGGAGGCGCT
GCTCGGCGAGTTTGGCGTTGACAAGTCCGCTATTAAGGAGCAGGATGGCG
CCGCCGCTGCCGCCGCTGCTGCTGCCGGCGAGGAGGATGCGGGCGGCGAA
GCCAACGGCGGCGGCGACGCTGGCAAGAAGAAAAAGAAGAAGAAGAAGCC
GGTGCCCGGCGCGGCGGTGAATGGAAAGGCGGCGGAGCCTGCGGAGGCTG
CTGCGCCCGTGCCGGCGGCGGCTGCAGCTGCAGGTGACTTGGACCCCATT
TTGCCTGAGCCTTGCGAGTGTTTGCATGGTGTCATGTAGTGTACCTACCT
ACCTACCTATCTTCTGGGGCGCTATCGCGTGGCGTAAGGCCTGCTGATCA
TGTGCAGAATCAGGTGCAGACGGATGCTCTCTCTGACGTGGACTGATGAA
AACCTAACCCTAACCCTAACCCTTACCCTGACGAATCAAAAAGATTGTTG
AGCTCTAGGTGACAAGGTATCGCGTGCCATCACGTAATCACATGCGATGC
ATGTTTGCAGCCGCAAGCCGTGGCCTTCTGCTAGATGTGGAGCGACGAGA
AACCGATGGCACCTTTCTGCTGCCTCAAACTGCATGGCGGCGGCAACTGA
ACCCACACCAGCAGCCACTGCAGCACCTCCAGAGTTTGTCTCCTCTGTTA
CCGTCGGCGAGTGAAACTGTGAAACAACCAACTGCTCCTGTGCATGTGCT
ATCCTCCATTTGCTTTGAACAAATGCTGATATTGTGCTTACGGGCGATCG
ATCCGCAACAGCGCGGTTCATGCGATGGTCACGTTGAAGCGACGCAGCAG
GTGCATGATGTTGACGCTACTTCAGGCCCAGGTATGTCTACGACATCGTG
CAAGCACATCCTCCGCAGCACATCATTAACCCCTCTCTCTCATGCTGCGC
CAACCACTGCGTGGCGGTGCAGAGGGCGTGCTGCCACCATCCGCAGCAGC
GCTCAAGCTCAAGGCGGCGGCCGCAAAGAAGAAGGCAGCCGCCAGCAAGA
GCAGCGCGGCGGCAGCGGCAGCCGCGGCGGCTGCCAAGGAGGCTGCTGCG
GAGAAGAAGAAGAAGGGCAAGAGCAAGGACAAGGCGCACTACAACCAGGC
TCCCACACGATGATAGTGTGTGTTGCTTCGGGGTTACTGCGGGGTTGCAC
GAGCTAGAGGGATGGTGGGGGCTACCTGCTTCACAGCTCTGTGCGTGTAA
GGGTGGGAGAGGGGGAAGATCGCACCGAGGTGACTCTCC

Coding sequence (CDS) from alignment at Contig_33:234239..238627+

>mRNA_5919 ID=mRNA_5919|Name=jgi.p|Trimin1|58906|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=780bp|location=Sequence derived from alignment at Contig_33:234239..238627+ (Tribonema minus UTEX_B_3156 )
ATGAGCGGGAAGCAGTCGTGGGCGGACGAGGACTCTTCAGATGACGAGCC
TGTGGCGGCTGCGCCGGCACCTAAGCCAAAAACGATCGATTGGGCAGCGG
ACTCTGATAGTGAGGAGGAGCCGGAGGTTCGCGAGGAGCGTGAGCCCTCT
GACCCCTTGGGCCTGAACAGCTCTGATGAGGAGGAGGAGAGCGATGAGGA
ATATGAGGAGCCAACCGAACAGCCTGCAGCAGGCGGCACCAGCGACGAGG
GCGACGAAGGCAAGCCCAAGGCAGACGCCCCCAAGCCCTTTGAACAGCTC
TCCAAGAAAGAGCGCAAGGCCCTCAAGCAGAAGGAGCTGGCGGACCTGGA
GGCGCTGCTCGGCGAGTTTGGCGTTGACAAGTCCGCTATTAAGGAGCAGG
ATGGCGCCGCCGCTGCCGCCGCTGCTGCTGCCGGCGAGGAGGATGCGGGC
GGCGAAGCCAACGGCGGCGGCGACGCTGGCAAGAAGAAAAAGAAGAAGAA
GAAGCCGGTGCCCGGCGCGGCGGTGAATGGAAAGGCGGCGGAGCCTGCGG
AGGCTGCTGCGCCCGTGCCGGCGGCGGCTGCAGCTGCAGAGGGCGTGCTG
CCACCATCCGCAGCAGCGCTCAAGCTCAAGGCGGCGGCCGCAAAGAAGAA
GGCAGCCGCCAGCAAGAGCAGCGCGGCGGCAGCGGCAGCCGCGGCGGCTG
CCAAGGAGGCTGCTGCGGAGAAGAAGAAGAAGGGCAAGAGCAAGGACAAG
GCGCACTACAACCAGGCTCCCACACGATGA