mRNA_5884 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160514
Unique NamemRNA_5884
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A835ZB82_9STRA (Various chains-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB82_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.130e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGASSRPPQLPQYLLLHS 345
            RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGASSRPPQLPQYLLLHS
Sbjct:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGASSRPPQLPQYLLLHS 115
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A835YV10_9STRA (Membrane subunit of NADH:quinone oxidoreductase/Mrp antiporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV10_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.060e-57
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:   19 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAV 291
            TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFY+ DMAV
Sbjct:    1 TCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYAIDMAV 91
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: D2Z207_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Chattonella marina TaxID=90936 RepID=D2Z207_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.430e-45
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGASSR 309
            R +   TCSQLGY++FACGLS YSVG+FHLANHAFFKALLFLGAGSVIHG+SDEQDMRK+GGL++LLPFTY+++ +GS SL+GLPFLTGFYSKD+ +  A S+
Sbjct:  310 RVIAYSTCSQLGYMVFACGLSNYSVGIFHLANHAFFKALLFLGAGSVIHGVSDEQDMRKMGGLKKLLPFTYSMMLIGSLSLMGLPFLTGFYSKDVILEVAYSK 412
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BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: Q8SKM1_COLIR (NADH dehydrogenase subunit 5 (Fragment) n=4 Tax=Coleochaete TaxID=3123 RepID=Q8SKM1_COLIR)

HSP 1 Score: 156 bits (394), Expect = 8.620e-45
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDM 285
            R +   TCSQLGY+IFACG+SQYSVG+FHL NHAFFKALLFL AGSVIH +SDEQDMRK+GGL  LLPFTYA++ +GS SLIG PFLTGFYSKD+
Sbjct:  133 RVIAYSTCSQLGYMIFACGISQYSVGIFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLVSLLPFTYAMMLIGSLSLIGFPFLTGFYSKDV 227
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A649UD00_AURAN (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UD00_AURAN)

HSP 1 Score: 161 bits (408), Expect = 3.270e-44
Identity = 74/95 (77.89%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDM 285
            R +   TCSQLGY++FACG+S Y+VGVFHLANHAFFKALLFL AGSVIHG+SDEQDMRK+GGLRRLLPFTYA++ +GS SL+G+PFLTGFYSKD+
Sbjct:  310 RVIAYSTCSQLGYMVFACGVSNYAVGVFHLANHAFFKALLFLSAGSVIHGVSDEQDMRKMGGLRRLLPFTYAMMLIGSLSLMGMPFLTGFYSKDV 404
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A0H3U9D2_9LILI (NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=Enhalus acoroides TaxID=55455 RepID=A0A0H3U9D2_9LILI)

HSP 1 Score: 151 bits (381), Expect = 7.550e-44
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDM 285
            R +   TCSQLGY+IFACG+S+YSVGVFHL NHAFFKA LFL AGSVIH +SDEQDMRK+GGL    P TYAI+ +GSFSLIG PFLTGFYSKD+
Sbjct:   55 RVIAYSTCSQLGYMIFACGISEYSVGVFHLMNHAFFKASLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAIMLIGSFSLIGFPFLTGFYSKDV 149
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A7S6ZPE4_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.840e-44
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDM 285
            R +   TCSQLGY++FACGLS YSV VFHLANHAFFKALLFLGAGSVIH + DEQDMRK+GGLRRLLPFTYA++ +GS SL+G+PFLTGFYSKD+
Sbjct:  310 RVIAYSTCSQLGYMVFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAMGDEQDMRKMGGLRRLLPFTYAMMLVGSLSLMGMPFLTGFYSKDL 404
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: D2Z253_HETAK (NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z253_HETAK)

HSP 1 Score: 160 bits (404), Expect = 1.140e-43
Identity = 73/95 (76.84%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDM 285
            R +   TCSQLGY++FACGLS YSVGVFHLANHAFFKALLFLGAGSVIH +SDEQDMRK+GGL++LLPFTY ++ +GS SL+G+PFLTGFYSKD+
Sbjct:  310 RVIAYSTCSQLGYMVFACGLSNYSVGVFHLANHAFFKALLFLGAGSVIHAVSDEQDMRKMGGLKKLLPFTYGMMLIGSLSLMGMPFLTGFYSKDV 404
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: Q8SKL8_9VIRI (NADH dehydrogenase subunit 5 (Fragment) n=2 Tax=Chaetosphaeridium TaxID=96476 RepID=Q8SKL8_9VIRI)

HSP 1 Score: 153 bits (386), Expect = 1.300e-43
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGASSR 309
            R +   TCSQLGY++FACG+S Y++GVFHLANHAFFKALLFL AGSVIH LSDEQDMRK+GGL  LLP TY+++ +GS SLIG PFLTGFYSKD+ +  A S+
Sbjct:  131 RVIAYSTCSQLGYMVFACGISNYALGVFHLANHAFFKALLFLSAGSVIHALSDEQDMRKMGGLANLLPLTYSLMLIGSLSLIGFPFLTGFYSKDVILELAYSK 233
[Close]
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Match: A0A3G5FPL7_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPL7_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.530e-43
Identity = 77/101 (76.24%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHGLSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGAS 303
            R +   TCSQLGY+IFACGLS YSV VFHLANHAFFKALLFLGAGSVIH + DEQDMRK+GGLRRLLPFTYA++ +GS +L+G+PFLTGFYSKD+ +L AS
Sbjct:  310 RVIAYSTCSQLGYMIFACGLSNYSVAVFHLANHAFFKALLFLGAGSVIHAVGDEQDMRKMGGLRRLLPFTYAMMVIGSLALMGMPFLTGFYSKDV-ILEAS 409
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160514 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB82_9STRA1.130e-77100.00Various chains-domain-containing protein n=1 Tax=T... [more]
A0A835YV10_9STRA2.060e-5797.80Membrane subunit of NADH:quinone oxidoreductase/Mr... [more]
D2Z207_9STRA4.430e-4573.79NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Cha... [more]
Q8SKM1_COLIR8.620e-4576.84NADH dehydrogenase subunit 5 (Fragment) n=4 Tax=Co... [more]
A0A649UD00_AURAN3.270e-4477.89NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Pel... [more]
A0A0H3U9D2_9LILI7.550e-4474.74NADH dehydrogenase subunit 5 (Fragment) n=1 Tax=En... [more]
A0A7S6ZPE4_9STRA7.840e-4477.89NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Sch... [more]
D2Z253_HETAK1.140e-4376.84NADH-ubiquinone oxidoreductase chain 5 n=7 Tax=Het... [more]
Q8SKL8_9VIRI1.300e-4369.90NADH dehydrogenase subunit 5 (Fragment) n=2 Tax=Ch... [more]
A0A3G5FPL7_9PHAE1.530e-4376.24NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:1537234..1537581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160514|e_gw1.13.166.1
KEGG TC3.D.1.6
BRITEko00000,ko00001,ko00002,ko01000,ko03029
KEGG rclassRC00061
KEGG ReactionR11945
KEGG ModuleM00142
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG koko:K03883
EC1.6.5.3
DescriptionProton-conducting membrane transporter
COG categoryC
Max annot lvl33208|Metazoa
EggNOG OGsCOG1007@1|root,KOG4668@2759|Eukaryota,38F5W@33154|Opisthokonta,3BEVW@33208|Metazoa,3CTS4@33213|Bilateria,422JH@6656|Arthropoda
Evalue1.16e-43
Seed ortholog6669.EFX60005
Hectar predicted targeting categorysignal peptide
TranscriptId160836
TrackFilteredModels1
ProteinId160514
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160514gene_5884Tribonema minus UTEX_B_3156 geneContig_13 1537234..1537581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5884_1exon_5884_1Tribonema minus UTEX_B_3156 exonContig_13 1537234..1537581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5884CDS_5884Tribonema minus UTEX_B_3156 CDSContig_13 1537234..1537581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160514Trimin1|160514|e_gw1.13.166.1Tribonema minus UTEX_B_3156 polypeptideContig_13 1537234..1537581 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Trimin1|160514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_13:1537234..1537581- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTTGTGTTCGGAGCCTAACTTGTAGTCAGTTAGGTTATATAATTTTTGC
TTGTGGTTTAAGTCAATACAGTGTTGGTGTTTTTCATTTAGCAAATCATG
CATTTTTTAAAGCTTTGCTATTTTTAGGCGCTGGTTCTGTTATTCATGGA
TTATCTGATGAACAAGACATGCGTAAAATAGGAGGTTTACGTCGACTATT
ACCATTTACTTATGCTATAATAAGTCTTGGTTCATTTTCTTTGATAGGGT
TACCGTTTTTAACAGGATTTTATTCAAAAGATATGGCAGTGTTGGGAGCT
TCAAGCCGCCCGCCACAGCTACCGCAGTACTTGCTACTGCATTCTTGA
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protein sequence of jgi.p|Trimin1|160514

>Trimin1|160514|e_gw1.13.166.1 ID=Trimin1|160514|e_gw1.13.166.1|Name=jgi.p|Trimin1|160514|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
RCVRSLTCSQLGYIIFACGLSQYSVGVFHLANHAFFKALLFLGAGSVIHG
LSDEQDMRKIGGLRRLLPFTYAIISLGSFSLIGLPFLTGFYSKDMAVLGA
SSRPPQLPQYLLLHS*
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mRNA from alignment at Contig_13:1537234..1537581-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Trimin1|160514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_13:1537234..1537581- (Tribonema minus UTEX_B_3156 )
CGTTGTGTTCGGAGCCTAACTTGTAGTCAGTTAGGTTATATAATTTTTGC
TTGTGGTTTAAGTCAATACAGTGTTGGTGTTTTTCATTTAGCAAATCATG
CATTTTTTAAAGCTTTGCTATTTTTAGGCGCTGGTTCTGTTATTCATGGA
TTATCTGATGAACAAGACATGCGTAAAATAGGAGGTTTACGTCGACTATT
ACCATTTACTTATGCTATAATAAGTCTTGGTTCATTTTCTTTGATAGGGT
TACCGTTTTTAACAGGATTTTATTCAAAAGATATGGCAGTGTTGGGAGCT
TCAAGCCGCCCGCCACAGCTACCGCAGTACTTGCTACTGCATTCTTGA
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Coding sequence (CDS) from alignment at Contig_13:1537234..1537581-

>mRNA_5884 ID=mRNA_5884|Name=jgi.p|Trimin1|160514|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_13:1537234..1537581- (Tribonema minus UTEX_B_3156 )
CGTTGTGTTCGGAGCCTAACTTGTAGTCAGTTAGGTTATATAATTTTTGC
TTGTGGTTTAAGTCAATACAGTGTTGGTGTTTTTCATTTAGCAAATCATG
CATTTTTTAAAGCTTTGCTATTTTTAGGCGCTGGTTCTGTTATTCATGGA
TTATCTGATGAACAAGACATGCGTAAAATAGGAGGTTTACGTCGACTATT
ACCATTTACTTATGCTATAATAAGTCTTGGTTCATTTTCTTTGATAGGGT
TACCGTTTTTAACAGGATTTTATTCAAAAGATATGGCAGTGTTGGGAGCT
TCAAGCCGCCCGCCACAGCTACCGCAGTACTTGCTACTGCATTCTTGA
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