mRNA_5858 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZE02_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE02_9STRA) HSP 1 Score: 582 bits (1499), Expect = 1.960e-210 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1 Query: 1 PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR Sbjct: 1 PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 274
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YZK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK9_9STRA) HSP 1 Score: 299 bits (765), Expect = 3.710e-94 Identity = 139/280 (49.64%), Postives = 198/280 (70.71%), Query Frame = 1 Query: 16 DDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSAD--------VHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 DD + +E LWT++ +D PTM++FVPGS+ V+ K G LR Y+SID+ + +T+++DM+A+ V+S DHG+ S EFHPDWD GV F+LY+GEPK ++ LPN AAI + RP +G + G W D+CPCLDC+GTG N +GL+CE PYY+DR +ID+ G AT+D+TLL A+CG+S++HGP L +G D+++G GD SQ +D GL D CFDP++ GQGS R +R+ F GKI R+P++L+DS +EL +QV ++AKG+RQP+R Sbjct: 39 DDDNVLVELLWTWDEDDLPTMIKFVPGSEQVLVAHKLGTLRLYDSIDSGVNAYTLLVDMTAELXXXXXXEVNSIHDHGLTSFEFHPDWDAGVRKVFLLYSGEPKDIRKLPNYAAILADRPPDYGTGPPGDHGQTWGDECPCLDCDGTGANLDGLVCEKPYYLDRFSIDLDAGTATRDVTLLTASCGSSTTHGPTDLKVIGKDLIYGAGDSSQVATLDYGLDVDACFDPNQSAGQGSYRCVRETFGAGKIGRIPHDLLDSDKELAFEQVELVAKGLRQPWR 318
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YXY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY7_9STRA) HSP 1 Score: 286 bits (732), Expect = 7.010e-87 Identity = 142/352 (40.34%), Postives = 195/352 (55.40%), Query Frame = 1 Query: 4 LQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGK----------------------------------------------------------------------------GQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 L P DD L +E +WT++Y+D+ M++FVPGSD VI+V K G +R Y+++ +D + ++DM+AD + DHG+ ++E+HPDWD GV FVLYTGEPK V+ LPN A++ RP WG G W D CPCLDC+G G+N +GL+CEHPYYIDRI++D+ G + KD+TLL CG+S +HGPG L +G D+++ G+GSQFT+ D G +DGC++ D GQGS RAIR+ F NGKI R+PY+L+DS E+ DQV ++AKGVRQP R Sbjct: 14 LAPVDDDNLLVEHIWTWQYDDRAVMIKFVPGSDQVISVHKAGNVRLYDNLQSDPYYYKHLVDMTADTYDLGDHGLLAMEYHPDWDAGVRKIFVLYTGEPKDVRQLPNNDAVEDDRPTSWGKGPPGKHGQLWPDSCPCLDCDGAGKNRDGLICEHPYYIDRISVDLDAGTSKKDVTLLSVMCGSSDTHGPGDLKIIGKDLIYSTGEGSQFTVFDYGFEDDGCYNSDSDSPLFPHPPXXXXXXXXXXXXXXXXXXXXXXXXIPLSTPAXXXXXXXXXXXXWLRPRSXXXXXXXXXXXXXXXXDQTAGQGSFRAIRETFGNGKIGRIPYDLLDSDSEISLDQVELVAKGVRQPVR 365
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 290 bits (742), Expect = 3.150e-86 Identity = 141/277 (50.90%), Postives = 182/277 (65.70%), Query Frame = 1 Query: 10 PNDDPELKLEQLWTFEYNDKPTMLRFVPGSDA-VITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDD--FNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 P+ + +L +E LW F +D P L FVPG+D V+T KTG +R Y ++DAD + + ++DM ADV S DHG+ S FHPD++ GV AF+ YTGEPK V LPN+AAI RP GWG + GY W D CPCLDC+GTG N G +CEHPYYIDR+ +D+ G TK++TLL CG++SSHGPG L+ + D++ GDGSQF D G PEDGC+ PD G QG RA R D + NGKI R+P L+DS + +QV I++G RQPFR Sbjct: 33 PSQNEDLVIEHLWQFSMDDPPVKLAFVPGTDGMVVTAHKTGFMRLYQNVDADVNDYKTLIDMRADVFSFGDHGLLSFAFHPDFEKGVKKAFLHYTGEPKDVSVLPNDAAITPNRPQGWGLGPPETTGYTWGDICPCLDCDGTGPNHYGNICEHPYYIDRVAVDLDAGTFTKEVTLLNDVCGSASSHGPGTLIFINGDLVASNGDGSQFAEFDPGFPEDGCYVPDAGADQGCFRAQRMDLPYANGKIMRVPAALLDSAATITLEQVEFISRGNRQPFR 309
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 259 bits (662), Expect = 1.410e-75 Identity = 124/242 (51.24%), Postives = 161/242 (66.53%), Query Frame = 1 Query: 106 VITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPEDGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 V+T K+G++R ++SI AD TVMLDM+ DV DHG+ S FHP + GV AF+LYTGEPK V LPN A I RPDGWG G+ W DQC CLDC+G G N G +CEHPYY+DR+ +D++ G TK++TLLQ ACG+SSSHGPG +L +G D+L VGDGSQ+ +D G DGC+ P G QG RA R+DF NGK+ R+P L+++P + + +A G+RQPFR Sbjct: 2 VVTSHKSGMVRLHSSITADFADSTVMLDMTEDVADYNDHGLLSFHFHPQFANGVQKAFLLYTGEPKDVNVLPNNAEITPNRPDGWGAGPPGKMGFTWNDQCRCLDCDGIGPNHYGNICEHPYYLDRVAVDLEAGTMTKEVTLLQVACGSSSSHGPGTVLSIGGDLLVSVGDGSQYAELDPGFDVDGCYVPGAGDDQGVFRAQREDFGNGKVHRIPAALLNAPAAIALEATSPVAIGLRQPFR 243
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YGZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ7_9STRA) HSP 1 Score: 224 bits (570), Expect = 3.470e-68 Identity = 127/299 (42.47%), Postives = 170/299 (56.86%), Query Frame = 1 Query: 1 PLQPNDDPELKLEQLWTFEYNDKP---TMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDW--DLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNG----GYKWWDQCPCLDCEGTG-QNENGLLCEHPYYIDRINI--DVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFT------------IIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 P+ P+ L +E +W F+ ++ +++VPG+D V+TV K G++R Y SIDA D F ++D+ V S++DHG+ SL FHP++ G TAF++Y+G PK V LPN AAI RP WG G GY+W + C G N NG +CE YY+DR+N+ D T DITL CG+SS+HGPG LL + D F +GDGSQF IID G P+ D C+ P G QG RA R DF NGK+ R+P L+DSP L D + ++ KG RQPFR Sbjct: 35 PVIPSHMDGLVVEHVWQFDPDNLAECVVQIQWVPGTDQVVTVHKHGIVRLYPSIDASVDDFVQLIDLRIAVDSDSDHGLLSLNFHPNFAGPNGTKTAFLMYSGNPKDVTLLPNNAAISPKRPADWGSQTGDLPGGYEWPEDL----CTNLGPDNYNGEICEKVYYMDRVNVNLDAATPVMTPDITLYAGVCGSSSTHGPGSLLEINGDFYFSMGDGSQFAAMGSQFIPAPLNIIDPGFPDVDACYVPGAGLDQGQFRAQRLDFPNGKVMRIPGKLLDSPTPLTFDDMEIVTKGNRQPFR 329
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZCH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH6_9STRA) HSP 1 Score: 221 bits (563), Expect = 1.540e-67 Identity = 117/286 (40.91%), Postives = 166/286 (58.04%), Query Frame = 1 Query: 1 PLQPNDDPELKLEQLWTFEYN----DKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWDL----GVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWG---DDNGGYKWWDQCPCLDCEGTGQNENGLLCEHPYYIDRINIDVKKGKATKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFTIIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 P+ P+ DP+L +E +W F D+PT ++++PG++ V+T KTG +R Y+SIDA + F + DV S DHG+ S +FHPD+++ G F+LY+G PK V LPN + ++RP WG D GY W D PC D N +GL+CE YY+DR D A KD+ L++ CG SS+HG G L+ VG D++F VGDG+QF + D G P + C+ P GK QG A RDD NGK+ ++PY +D+ L + I++G RQP R Sbjct: 35 PIVPSKDPDLVVELVWQFVQPAGNLDQPTQIKWLPGTEQVVTSHKTGTMRLYDSIDAGVEDFIPFANNQLDVDSEGDHGLLSFQFHPDFNVKAGVGSKYIFLLYSGNPKDVTLLPNNDVVAAVRPPTWGAGPPDPKGYTWGDG-PCPDL--GKDNMDGLICEKVYYLDRYTYDPATRTAAKDMQLMEVMCGTSSTHGTGELVLVGKDMVFAVGDGAQFVVFDPGFPTLNACYVPGNGKDQGVFNAQRDDMLNGKVIKVPYAALDAAAPLTPADISFISRGSRQPLR 317
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835Z9F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F2_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.700e-32 Identity = 64/150 (42.67%), Postives = 88/150 (58.67%), Query Frame = 1 Query: 16 DDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSAD----------------VHSNADHGVQSLEFHPDWDLGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDD---NGGYKWWDQCPCL 408 DD + +E LW ++ +D+PTM++FVPG+D V+ K G LR Y+SID+D + + +++DM+AD V+S DHG+ S EFHPDWD GV FVLYTGEPK V+ LPN + RP +G G W D+C L Sbjct: 38 DDDNVLVELLWAWDVDDRPTMIKFVPGADQVMVAHKLGTLRLYDSIDSDVNDYKLLVDMTADLXXXXXXXXXXXXXXXVNSITDHGITSFEFHPDWDGGVRKLFVLYTGEPKDVRKLPNYKVVLPYRPPAYGTGPPGTHGQTWGDECEGL 187
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835YQG5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG5_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.110e-26 Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 1 Query: 25 ELKLEQLWTFE-----YNDKPTMLRFVPGSDAVITVGKTGVLRWYNSIDADKDKFTVMLDMSADVHSNADHGVQSLEFHPDWD---LGVHTAFVLYTGEPKSVKTLPNEAAIKSMRPDGWGDDNGGYKW--WDQ----CPCLDCEGTGQNENGLLCE 453 +L +EQ+W F+ N T L ++PG++ VI K G L Y++IDA D++ + DM+ DV S DHG+ FHP++ +G ++ F+LY+G+PK V LPN+AA+ +RP GWG G K WD+ CP L E N G LCE Sbjct: 1 DLVVEQVWKFDDGIVDENMGVTHLDWIPGTEKVIVARKKGYLHMYDTIDAGVDEYKEVFDMNVDVASLDDHGLLGFAFHPNFGKPGVGTNSVFILYSGQPKDVTLLPNDAAVAQLRPAGWGQGPPGTKGYAWDESGYLCPAL--EKPLNNYGGKLCE 155
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.240e-21 Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1 Query: 505 TKDITLLQAACGASSSHGPGHLLRVGDDILFGVGDGSQFT------------IIDTGLPE-DGCFDPDKGKGQGSLRAIRDDFNNGKIRRLPYNLMDSPEELEGDQVPVIAKGVRQPFR 822 TKD+TL CG+SS+HGPG L+ VG +++F +GDG+QF +ID G P+ DGCF P G QG R+ R DF +GK+ +P L+DS + DQ+ V+++G RQPFR Sbjct: 2 TKDLTLYVGVCGSSSTHGPGTLINVGANMIFAMGDGAQFAAVDEKYIPAPLNVIDPGFPQTDGCFVPGAGADQGEFRSQRMDFPHGKVLMIPGKLLDSKVPITLDQLVVVSRGNRQPFR 120 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138480 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGCTGCAGCCTAACGACGATCCGGAGCTCAAGCTGGAGCAACTCTGGACback to top protein sequence of jgi.p|Trimin1|138480 >Trimin1|138480|gw1.13.81.1 ID=Trimin1|138480|gw1.13.81.1|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp PLQPNDDPELKLEQLWTFEYNDKPTMLRFVPGSDAVITVGKTGVLRWYNSback to top mRNA from alignment at Contig_13:1305492..1309061- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3570bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:1305492..1309061- >mRNA_5858 ID=mRNA_5858|Name=jgi.p|Trimin1|138480|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=822bp|location=Sequence derived from alignment at Contig_13:1305492..1309061- (Tribonema minus UTEX_B_3156 )back to top |