mRNA_5804 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160386
Unique NamemRNA_5804
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A835ZJU7_9STRA (YCII domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJU7_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.130e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMPALLPPQ 297
            SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMPALLPPQ
Sbjct:    1 SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMPALLPPQ 99
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: D8LEJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ2_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 7.180e-27
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:   22 YTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIM 276
            YTYV+GM++KRGP+R  HL +L  +T++G C+LGGAF+ P DGA+LLF +   A+ F  +DPY+  GL+TK+ IRDY AV GT++
Sbjct:   98 YTYVDGMVDKRGPYRTDHLDLLKAMTEEGTCLLGGAFLEPCDGAVLLFSSPEKAQQFVDKDPYNTGGLVTKYQIRDYMAVVGTML 182
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: UPI000833C2E6 (YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH001 TaxID=1581011 RepID=UPI000833C2E6)

HSP 1 Score: 92.0 bits (227), Expect = 2.560e-22
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLF--QTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIM 276
            Y+L Y YV+ ++EKR P R+AHL +     + GE +LGGAF NPADGA+L+F  + +A  E F  QDPY + GL+T +NIR++  V G  +
Sbjct:    3 YILFYNYVDNIIEKRVPFREAHLALATSFVESGELLLGGAFANPADGAILIFKVENKAQVEAFVKQDPYVQNGLVTSWNIREWSVVVGAAL 93
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A7S3JUF8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUF8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.410e-21
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQ----TRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMP 279
            Y L+YTYV+GMLEKR P+R AHL  L ++   G+CVLGGAF +P DGA++LF     T+   E FA  DPY    L+  +++ +Y AV G++ P
Sbjct:   55 YALRYTYVDGMLEKRQPYRQAHLDGLKKMADLGKCVLGGAFNDPCDGAVVLFDSSTTTKEEIEAFANVDPYVVNNLVPSWSVSEYMAVVGSLKP 148
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A0G4ERK1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERK1_VITBC)

HSP 1 Score: 89.4 bits (220), Expect = 8.560e-21
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   13 MLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQ--TRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIM 276
            +L+Y+YV  +LEKR PHR  HLQ+L    Q  E +LGGAF NP DGAML+F+  ++   E F +QDPY +  L+T ++IRD+  V G+++
Sbjct:   25 VLRYSYVADVLEKRQPHRSGHLQLLKTFFQPDELLLGGAFANPPDGAMLVFRNVSKERIERFVSQDPYVRNDLVTHWDIRDWSCVVGSVL 114
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: UPI0009318C62 (YciI-like protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009318C62)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-20
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQ--TRAAAETFAAQDPYSKAGLITKFNIRDYDAVTG--TIMPALLPP 294
            Y+L Y YV   LE+R P R AH+ +   L ++GE  LGGAF NPADGAM++F   + A AE FA  DPY  AGL+T++ +R++  V G     P  LPP
Sbjct:    3 YVLFYEYVPDYLERREPLRAAHMALAAPLIERGELFLGGAFANPADGAMIVFSGNSPAVAENFAKADPYVAAGLVTRWWVREWTTVVGKDAAQPVKLPP 101
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A6J4II06_9CHLR (YCII domain-containing protein n=1 Tax=uncultured Chloroflexia bacterium TaxID=1672391 RepID=A0A6J4II06_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 1.750e-20
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQTRAAA-ETFAAQDPYSKAGLITKFNIRDYDAVTGT 270
            Y+L Y +V+  LE+RG  RD HL +  E   +GE VLGGA  +P DGA+LLFQ  AAA E FAA DPY + GL+T++ +R +  V GT
Sbjct:   48 YLLMYEFVDDYLERRGAFRDEHLGLAWEAHARGELVLGGALADPVDGAILLFQGEAAAAERFAAADPYVRHGLVTRWRVRPWTTVVGT 135
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A7S0EWB9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWB9_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.360e-20
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    7 LYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQT-RAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMPALLPP 294
            L++L YTY +  LEKR PHR AHL       Q+G+ +LGGA  +P DG +LLF   R  AE FA  DPY++ G++T + +R++  V G++   L  P
Sbjct:    1 LHLLLYTYTDNALEKRAPHRSAHLAAARAAEQRGQLLLGGALADPLDGGVLLFAGGREVAEAFATSDPYTQNGIVTDWTVREWTVVVGSMFAQLPAP 97
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A2E2HG56_9GAMM (YCII domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2HG56_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 6.540e-20
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQT--RAAAETFAAQDPYSKAGLITKFNIRDYDAVTG 267
            ++L Y Y+E +++KR P+R+AHL ++ E  ++GE  L GAF +P DGA+L+F+T  +   E F  QDPY + GL+TK+ IR++  VTG
Sbjct:    3 FLLFYDYIENVVDKRTPYREAHLALVNEYLEQGEIQLAGAFADPVDGAVLVFKTENKEHIEEFVRQDPYVQNGLVTKWRIREWRVVTG 90
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BLAST of jgi.p|Trimin1|160386 vs. uniprot
Match: A0A1A6C2B1_9GAMM (YCII domain-containing protein n=2 Tax=Acidihalobacter TaxID=1765964 RepID=A0A1A6C2B1_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 1.390e-19
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   10 YMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADGAMLLFQT--RAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIM 276
            Y+L Y YVE ++E+R P R AHL +  E   +GE +LGGA+ +PADGA L+F+T  R+  E+F A DPY +  L+T + IR++  V G+ +
Sbjct:    3 YILFYDYVENIIERRTPFRQAHLALTEEYVHRGELLLGGAYADPADGAALIFKTEDRSRVESFVANDPYVRNRLVTGWRIREWTVVVGSAL 93
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160386 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJU7_9STRA1.130e-65100.00YCII domain-containing protein n=1 Tax=Tribonema m... [more]
D8LEJ2_ECTSI7.180e-2754.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI000833C2E62.560e-2247.25YciI-like protein n=1 Tax=Sulfurospirillum sp. UCH... [more]
A0A7S3JUF8_9STRA3.410e-2147.87Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A0G4ERK1_VITBC8.560e-2147.78Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
UPI0009318C621.110e-2047.47YciI-like protein n=1 Tax=Hyphomicrobium sp. NDB2M... [more]
A0A6J4II06_9CHLR1.750e-2051.14YCII domain-containing protein n=1 Tax=uncultured ... [more]
A0A7S0EWB9_9EUKA3.360e-2043.30Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A2E2HG56_9GAMM6.540e-2045.45YCII domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A1A6C2B1_9GAMM1.390e-1945.05YCII domain-containing protein n=2 Tax=Acidihaloba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:585865..587882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160386|e_gw1.13.227.1
DescriptionYCII-related domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2DZF9@1|root,2S6ZJ@2759|Eukaryota
Evalue1.18e-27
Seed ortholog2880.D8LEJ2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-21_004450.1
TranscriptId160708
TrackFilteredModels1
ProteinId160386
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160386gene_5804Tribonema minus UTEX_B_3156 geneContig_13 585865..587882 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5804_1exon_5804_1Tribonema minus UTEX_B_3156 exonContig_13 585865..586006 +
exon_5804_2exon_5804_2Tribonema minus UTEX_B_3156 exonContig_13 587725..587882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5804CDS_5804Tribonema minus UTEX_B_3156 CDSContig_13 585865..586006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160386Trimin1|160386|e_gw1.13.227.1Tribonema minus UTEX_B_3156 polypeptideContig_13 585865..587882 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Trimin1|160386|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=300bp|location=Sequence derived from alignment at Contig_13:585865..587882+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCCAGTTGTACATGCTGCAGTACACATACGTCGAGGGAATGCTGGAGAA
GCGGGGGCCGCACAGAGACGCGCACTTGCAGATGCTTGGCGAATTGACGC
AGAAGGGGGAGTGCGTGCTGGGGGGCGCTTTCATGAATCCAGCGGACGGA
GCGATGCTGCTCTTCCAGACGCGCGCCGCGGCGGAGACGTTCGCCGCGCA
GGACCCCTACAGCAAGGCGGGGCTCATCACCAAGTTCAACATTCGAGACT
ACGACGCCGTCACCGGCACAATTATGCCAGCGCTTCTGCCGCCGCAATAG
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protein sequence of jgi.p|Trimin1|160386

>Trimin1|160386|e_gw1.13.227.1 ID=Trimin1|160386|e_gw1.13.227.1|Name=jgi.p|Trimin1|160386|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
SQLYMLQYTYVEGMLEKRGPHRDAHLQMLGELTQKGECVLGGAFMNPADG
AMLLFQTRAAAETFAAQDPYSKAGLITKFNIRDYDAVTGTIMPALLPPQ*
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mRNA from alignment at Contig_13:585865..587882+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Trimin1|160386|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2018bp|location=Sequence derived from alignment at Contig_13:585865..587882+ (Tribonema minus UTEX_B_3156 )
TCCCAGTTGTACATGCTGCAGTACACATACGTCGAGGGAATGCTGGAGAA
GCGGGGGCCGCACAGAGACGCGCACTTGCAGATGCTTGGCGAATTGACGC
AGAAGGGGGAGTGCGTGCTGGGGGGCGCTTTCATGAATCCAGGTCGGTCT
CGCCACACACTGACAACGGTAGTGCGGCTCGAAGGAAATTCCACGTCTAG
GTGACAGCCTGATCATTGAAGTAAACCCAGGCAAGTGACCAGAAGCCACA
GTGGCACTGCGTCCTTCACTGCGCTAACATGCTTTGTGATCCACAAACTT
CCCCGGTCACCTCATGAACTTCAACAGTGCATGTGCTTGCCTGAAGATGA
TTTCCATGTGACCACACCTACAGCAAGTCCTGGCAACCGTTGCGCGCCTT
GCCCATTCCTGGTTCGAGACTCTCTGGTATCACCAGTGTGCGAGGCCGCA
GATTACGTAGCGTGCAGGTCTATGCAGCTGAACTGATTGCAGATTGATGC
TCCATGGAGAGCCTTGCACTTCATTAGGATGATACTTCAGGAAGGTGTGT
TTTTGGGACACGCGATGTTGCGGAAGGATGGGACACCGCAACAGTTCTCG
TTTGTACCCGTCAAGCAGCCTTGATCAGATCGCCGGTGCGCCCTGCGTTT
GAAGGCGCTAATGCTGCTGGTGGAGCACCATGCCGCTTGATCGGCGGAGT
CCGCAGGCCCTGCTTTGTCGCCACCACGTTTTGTAGGCTTCAATGTAACG
CTTTGACGCGCGCAGAAGCACTCCAGACAGTTGACGCCGCTGTCTCAGTT
GCCCTGTACCCATCCCGAAGATAAATTATGCAAACAAATTTGTGCATGCT
GTTGTTCTTGCCTGTTGAAGATCTATTATCAAAGAATTGGTGAAGATCTT
TTGATTCGTTTTCATTGAAGAAACTTGCAATTTGTCATTTGCAATTTGTC
ATCACTTGGCCAAATCGTACTTTCCGTGTTACGACTTTTACATCATGACC
AATCGTCGACGCTCTCATACGCTTGAGCAGCTGCAGTGCAGCTGCTAGAG
TTGTGCCGCGTGTTCAGACCTGTGCCACAGCGGAGGATTGCATCAGGAAG
GAACATCCGTTGAGGCCGGGGTTCACGCCATTACTAACGCACGTGTTCTG
CAGAACCTGTGCTTCTTGTTGGCAGTAAAACCCAGCCTTGGCATCTAAAG
TCTTTCTACATGCACGCGCAGCTGATGGAGCTGTGCTGAATTCTTTATGT
CTGCGGCCAATCACCAGCGGCAGATATCAACGTTCCAGTTTTGTATGTGC
TGCAGCTAGGTCAGTCATGCAGTTTCTCCAAAATCACACTGCAGCGATGA
TGCTTTGTCAGCCAGGACGAGTAAGGGGGGCTCAGTAACCCGATATAACA
AGACCTCTTCTTTACAGCATTGCTACCCATACAGTGAGTTTCCATAGTAA
TCTCAGCAGTTCGCCACTTCGTCATGTATGCGCAGCGCTCCACTCAGAGT
GTCCATAGTAATCTCATGAGTTCGCCGCTACGTCATGTATGCGCAGCGGT
CGGAGCGACGCTGCTGCTCTTCCAGCAGGTTTCCATAGTAATCTCATGCT
TTTGCCGCTGCGTCATGTATGCGCAGCGCACGAAGCGACGCTGCTGCTCT
TCCAGCAGGTTTCCATAGTAATCTCATGCGTGTGCCGCTACGTCCTGTAT
GCGCAGCAGACGGAGCAATGCTGCTCCTCCAGCAGGTTTCTATAGTGATC
TCATGAGTTTGCCGCTACGTCCTGTATGCGCGGCGGACGGAGCAATGCTG
CTCTTCCAGCGGGTTTCCATAGTAATCTCATGCATTTGCCGCTACGTCAT
GTATGCGCAGCGGACGGAGCGATGCTGCTCTTCCAGACGCGCGCCGCGGC
GGAGACGTTCGCCGCGCAGGACCCCTACAGCAAGGCGGGGCTCATCACCA
AGTTCAACATTCGAGACTACGACGCCGTCACCGGCACAATTATGCCAGCG
CTTCTGCCGCCGCAATAG
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Coding sequence (CDS) from alignment at Contig_13:585865..587882+

>mRNA_5804 ID=mRNA_5804|Name=jgi.p|Trimin1|160386|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=300bp|location=Sequence derived from alignment at Contig_13:585865..587882+ (Tribonema minus UTEX_B_3156 )
TCCCAGTTGTACATGCTGCAGTACACATACGTCGAGGGAATGCTGGAGAA
GCGGGGGCCGCACAGAGACGCGCACTTGCAGATGCTTGGCGAATTGACGC
AGAAGGGGGAGTGCGTGCTGGGGGGCGCTTTCATGAATCCAGCGGACGGA
GCGATGCTGCTCTTCCAGACGCGCGCCGCGGCGGAGACGTTCGCCGCGCA
GGACCCCTACAGCAAGGCGGGGCTCATCACCAAGTTCAACATTCGAGACT
ACGACGCCGTCACCGGCACAATTATGCCAGCGCTTCTGCCGCCGCAATAG
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