mRNA_5803 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160496
Unique NamemRNA_5803
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A835Z9R1_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 4.730e-76
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQVSLCHRRSGGP 330
            GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQVSLCHRRSGGP
Sbjct:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQVSLCHRRSGGP 110
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A835Z8Z5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 7.190e-33
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQ 297
            GTVRYM PEV RGQ YNE+VDVYSFGL+LWEML Y+RVF GI +R+FY  V+  G RP  +  WSP L  LMK CW+ + + RP  +++ A LR +LAQ
Sbjct:  201 GTVRYMPPEVARGQCYNEKVDVYSFGLMLWEMLQYRRVFSGISVREFYADVLVGGRRPTPDPSWSPELVALMKGCWSVDCNKRPCFKSIVATLRSVLAQ 299
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.730e-29
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVI 288
            G++RYMAPEVV   PYNE+VDVY+FGLLLWEML Y+RVFEG+ +  FY+ V+  G+RP +++ W PAL +L+  CW  + D RPD   +AA L+ I
Sbjct:  331 GSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRPDFHYIAAQLKDI 426
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.430e-25
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVI 288
            G++RYMAPEVV   PYNE+VDVY+FGLLLWEML  +RVF+G+ +  FY+ V+  G RP +++ W   L +L+  CW  + D RP+   +A  LR +
Sbjct:  184 GSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERLRTL 279
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A6H5L2R6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.620e-25
Identity = 47/96 (48.96%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVI 288
            G++RYMAPEVV   PYNE+VDVY+FGLLLWEML  +RVF+G+ +  FY+ V+  G RP +++ W   L +L+  CW  + D RP+   +A  LR++
Sbjct:  397 GSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERLRIL 492
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.210e-24
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAAL 279
            G+ RYM PEV    PYNE+ DVYSFGL+LWEML+ +R FEG+  ++F +SVI  G RP ++  WS AL  LM+ CW  + D RP+ E V   L
Sbjct:  257 GSTRYMCPEVAMQLPYNEKADVYSFGLILWEMLSLRRPFEGLNRKEFVQSVIKGGRRPPLQQEWSAALRELMRRCWDEDMDTRPEFEEVEDTL 349
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A7S2S189_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S189_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.010e-24
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQ 297
            G++RYMAPEV  GQPYN + DVYSFG++LWEMLA+++ F+G+   QF++ V   G RP +   W      +MKSCW+ + ++RP+ + V A L  IL +
Sbjct:  562 GSLRYMAPEVADGQPYNHKADVYSFGIILWEMLAHKKPFDGMDKEQFFERVTYGGERPTINKKWPTEFTDIMKSCWSYDSESRPNFQTVVAKLNKILTK 660
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A482S9W4_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9W4_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 4.580e-24
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQV 300
            G++RYMAPEV   QPY E+VDVYSFG+++W+M   +  F+G     F K V+ +G RP++++ W P+   L+  CW  +P  RP  EA+   L +++ +V
Sbjct:   47 GSLRYMAPEVALRQPYTEKVDVYSFGIMVWQMARDRVPFKGYAKDNFMKQVVVNGERPKLDSSWPPSFTDLLTRCWCKDPKVRPSFEAIKGELDILIGEV 146
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A835YNL8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNL8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.270e-23
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQ 297
            GT RYMAPEV R +PYN  VDVYSFG+LLWEML+  R F     +    +V+    RPE++  W   +  L++ CW  +PD RPD  AVA  LR +LA+
Sbjct:  222 GTSRYMAPEVARCEPYNASVDVYSFGVLLWEMLSGGRAFANFNEQLLRSAVVYGSHRPELDRAWPAPIKSLLQGCWNADPDQRPDATAVARCLRAVLAE 320
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BLAST of jgi.p|Trimin1|160496 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.000e-23
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKSVITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVI 288
            G+ R+M+PEV +G PYNE+VDVYSF ++LWE+   ++ F G+ +   Y+ VIT GLRP ++  W  AL  L+++CW  +PD RP I      L+ I
Sbjct:  239 GSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVLQQI 334
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160496 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9R1_9STRA4.730e-76100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z8Z5_9STRA7.190e-3358.59Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZE86_9STRA1.730e-2955.21Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D7FS28_ECTSI1.430e-2548.96Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L2R6_9PHAE1.620e-2548.96Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5LAW2_9PHAE1.210e-2451.61Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2S189_9STRA2.010e-2446.46Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A482S9W4_9ARCH4.580e-2441.00Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A835YNL8_9STRA2.270e-2348.48Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5JMU8_9PHAE6.000e-2344.79Protein kinase domain-containing protein n=2 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:559693..560417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160496|e_gw1.13.53.1
KEGG TC1.I.1
BRITEko00000,ko00001,ko00002,ko03019,ko03036
KEGG ModuleM00427
KEGG Pathwayko03013,map03013
KEGG koko:K14304
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
Descriptionprotein kinase activity
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Evalue2.34e-26
Seed ortholog2880.D7FS28
Hectar predicted targeting categoryother localisation
TranscriptId160818
TrackFilteredModels1
ProteinId160496
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160496gene_5803Tribonema minus UTEX_B_3156 geneContig_13 559693..560417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160496Trimin1|160496|e_gw1.13.53.1Tribonema minus UTEX_B_3156 polypeptideContig_13 559693..560417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5803_2exon_5803_2Tribonema minus UTEX_B_3156 exonContig_13 559693..559928 -
exon_5803_1exon_5803_1Tribonema minus UTEX_B_3156 exonContig_13 560297..560417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5803CDS_5803Tribonema minus UTEX_B_3156 CDSContig_13 560297..560417 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Trimin1|160496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_13:559693..560417- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAACGGTGAGATATATGGCACCCGAGGTGGTGCGCGGCCAGCCGTACAA
CGAGCGCGTCGACGTGTACTCCTTCGGCCTGCTGCTCTGGGAGATGCTCG
CCTACCAGCGCGTCTTTGAAGGCATACCGCTGCGCCAGTTCTACAAGAGC
GTCATCACGGATGGCCTGCGGCCGGAGATGGAGGCGCACTGGTCCCCCGC
CCTCGCGCGCCTCATGAAGAGCTGCTGGGCGCCGAACCCGGATGCGCGCC
CCGACATCGAGGCCGTCGCCGCCGCGCTGCGTGTCATCCTGGCGCAGGTG
AGCTTGTGCCATCGGCGCTCTGGAGGTCCGGGGGGGGGGGGGGGGGGGGG
CAACTAG
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protein sequence of jgi.p|Trimin1|160496

>Trimin1|160496|e_gw1.13.53.1 ID=Trimin1|160496|e_gw1.13.53.1|Name=jgi.p|Trimin1|160496|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
GTVRYMAPEVVRGQPYNERVDVYSFGLLLWEMLAYQRVFEGIPLRQFYKS
VITDGLRPEMEAHWSPALARLMKSCWAPNPDARPDIEAVAAALRVILAQV
SLCHRRSGGPGGGGGGGN*
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mRNA from alignment at Contig_13:559693..560417-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Trimin1|160496|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=725bp|location=Sequence derived from alignment at Contig_13:559693..560417- (Tribonema minus UTEX_B_3156 )
GGAACGGTGAGATATATGGCACCCGAGGTGGTGCGCGGCCAGCCGTACAA
CGAGCGCGTCGACGTGTACTCCTTCGGCCTGCTGCTCTGGGAGATGCTCG
CCTACCAGCGCGTCTTTGAAGGTGAGGGAAGAAGGGGGGGAATGCGCGTG
AGGCTGTGCATGGCAGACCCTTGTGGTAGGCACGCATGGGACTACTTCCA
ACAGTACGAGGGACATTCTGAATCTAGCTCAAGGCACTGGTACGGACTGA
GGCAGGACTGCAGTCACCGTTGACTAGTGCTCTATGAGACGATGGCCTGC
AGTCAGCTCACCGCTGAACCCATCACTCACAGCATCACAATCATCACGCG
ATGGCATGCAGCTTCCAGGGTTAGGACCGCGTTCACAGCTTTGCGCTCCC
TTCGCGCTCGCCTCCGAGCGCTGCCACATCACGCAGCGCTCAGCACGTCT
CAACGCGCTGCGCCACATCGACTTCGCACCCGCCCGCAGGCATACCGCTG
CGCCAGTTCTACAAGAGCGTCATCACGGATGGCCTGCGGCCGGAGATGGA
GGCGCACTGGTCCCCCGCCCTCGCGCGCCTCATGAAGAGCTGCTGGGCGC
CGAACCCGGATGCGCGCCCCGACATCGAGGCCGTCGCCGCCGCGCTGCGT
GTCATCCTGGCGCAGGTGAGCTTGTGCCATCGGCGCTCTGGAGGTCCGGG
GGGGGGGGGGGGGGGGGGCAACTAG
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Coding sequence (CDS) from alignment at Contig_13:559693..560417-

>mRNA_5803 ID=mRNA_5803|Name=jgi.p|Trimin1|160496|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_13:559693..560417- (Tribonema minus UTEX_B_3156 )
GGAACGGTGAGATATATGGCACCCGAGGTGGTGCGCGGCCAGCCGTACAA
CGAGCGCGTCGACGTGTACTCCTTCGGCCTGCTGCTCTGGGAGATGCTCG
CCTACCAGCGCGTCTTTGAAGGCATACCGCTGCGCCAGTTCTACAAGAGC
GTCATCACGGATGGCCTGCGGCCGGAGATGGAGGCGCACTGGTCCCCCGC
CCTCGCGCGCCTCATGAAGAGCTGCTGGGCGCCGAACCCGGATGCGCGCC
CCGACATCGAGGCCGTCGCCGCCGCGCTGCGTGTCATCCTGGCGCAGGTG
AGCTTGTGCCATCGGCGCTCTGGAGGTCCGGGGGGGGGGGGGGGGGGGGG
CAACTAG
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