mRNA_5742 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137336
Unique NamemRNA_5742
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A835ZGU7_9STRA (Mitochondrial carrier domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGU7_9STRA)

HSP 1 Score: 469 bits (1208), Expect = 5.220e-166
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
Query:    1 ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP 828
            ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP
Sbjct:    1 ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRSLSGHRPPP 276          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: D7FS27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS27_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.560e-56
Identity = 114/258 (44.19%), Postives = 159/258 (61.63%), Query Frame = 1
Query:    7 SSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAM---TDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            S  SVA+ I    G AGLY GV Y+  +  +EKAAYFYGYGWL+  A+   G        D+ LGY A+A HLP T+P+++VL +++T++  +    A  +++GIL   G  G Y G +AY VLCLKPA+QYA+FNRL+   LA                       L+A QAF +GAI+RA+ATV VFP+ RAKV+ M   T +G  + +  P  SIL SL+ + + +G  ALF+G+ PE+ RGVLSAALM+++KE+
Sbjct:   98 SVASVAKDIYSREGIAGLYRGVWYASTQSGVEKAAYFYGYGWLKALALRGGGRGELSTAKDLGLGYLAEAFHLPFTIPIEVVLTKIMTSKEKTN---AFAVIQGILSESGPAGFYTGIQAYAVLCLKPAIQYAVFNRLKAITLAYRSDGRSSAQPKE----------LTAVQAFVIGAISRAVATVIVFPYIRAKVIIMSKKTGEGSGNGTKSPSTSILSSLITLLKDDGFSALFQGITPEIGRGVLSAALMMLVKEK 342          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A6A4AHM2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHM2_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.430e-47
Identity = 104/248 (41.94%), Postives = 143/248 (57.66%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPS----------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L +  VA + G+P G L D+ +GY ++ CHLP+T+P++LV  R+ T   GSGG     I+R I++  G  GLY+G  AY VLCL+PA+QY +F RL+G  L                        L A +AF LGAIAR+IAT+ +FP+ RAKVL  T+    + +     +          I  +L  + R EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   69 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VAPKDGQPIGTLTDLGIGYLSEMCHLPITMPMELVGTRMQT---GSGGGSIIQILRSIVRESGVGGLYKGLGAYFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------ALGALEAFVLGAIARSIATLILFPYIRAKVLMQTNKKKQTTTADQEQAQTCVELKKETIASTLQRVYREEGPLALYRGLGPELTRGALSSALMLMIKEK 297          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A662X3A5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3A5_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.350e-46
Identity = 105/245 (42.86%), Postives = 142/245 (57.96%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGK-PPPS------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L +  VA   G+P G L D+A+GY ++ CH+P+TLP++LV  RL T+   S   G   I+R I+   G  GLY+G  AY VLCL+PA+QY +F RL+G  L                       +L A +AF LGA+AR+IAT+ +FP+ RAKVL           G+ P PS      I  +L  + + EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   72 LYQGIQYKAAESSTSKFLYFYSYTMLAQM-VAPSDGKPIGTLTDLAIGYVSELCHIPITLPMELVGTRLQTS---SESGGVFQIIRTIIGESGLGGLYKGLGAYFVLCLQPAIQYTVFERLKGWYLRRFKQAAQ---------------SLGALEAFVLGAVARSIATLVLFPYIRAKVLMQAKKKAAVAEGELPKPSDGKKETIASTLQRVYKEEGPLALYRGLGPELTRGALSSALMLMIKEK 297          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A3R7FXG1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FXG1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.870e-45
Identity = 105/249 (42.17%), Postives = 142/249 (57.03%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDD----GGHSESGKPPPS-------ILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L +  VA R G+P G L D+A+GY ++ CHLP+T+P++LV  RL T+   S   G   I+R I++  G  GLY+G  A  VLCL+PA+QY +F RL+G  L                        L A +AF LGAIAR+IAT+ +FP+ RAKVL         G     G+ P +       I  +L  + + EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   67 LYQGIQYKAAESSTSKFMYFYAYTMLAQM-VAPRDGKPIGTLTDLAIGYMSELCHLPVTMPMELVGTRLQTS---SESGGVLQILRTIVRESGVGGLYKGLGACFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------VLGALEAFVLGAIARSIATLVLFPYIRAKVLMQAKKKQTAGADLNQGQVPSAGGAKKETIASTLQRVYKEEGPLALYRGLGPELTRGALSSALMLMIKEK 296          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: G4Z3D3_PHYSP (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=G4Z3D3_PHYSP)

HSP 1 Score: 163 bits (412), Expect = 3.300e-45
Identity = 101/238 (42.44%), Postives = 138/238 (57.98%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L +  VA +GG+P G L D+ +GY ++ CHLP+T+P++LV  R+ T  G SGG+    ++R I+K  G  GLY+G  AY VLCL+PA+QY +F RL+G  L                        L A +AF LGAIAR+IAT+ +FP+ RAK                  +I  +L  +   EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   72 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VAPKGGKPIGTLTDLGIGYLSELCHLPITMPMELVGTRMQTGSG-SGGSILH-VLRSIVKESGIGGLYKGLGAYFVLCLQPAIQYTVFERLKGVYLRKFKQASQ---------------ALGALEAFVLGAIARSIATLVLFPYIRAKK----------------ETIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 275          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A3M6VNL6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNL6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.010e-44
Identity = 101/247 (40.89%), Postives = 137/247 (55.47%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSE---------SGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L + A   + G+P G L D+ +GY ++ CHLP+T+P++LV  R+ T   GS       I+R I+K  G  GLY+G  AY VLCL+PA+QY +F RL+   L                        L A + F LGAIAR+IAT+ +FP+ RAKVL  T                S +P  +I  +L  +   EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   65 LYQGIQYKAAESSTSKFMYFYAYTMLAQMATP-KDGKPIGTLTDLGIGYLSELCHLPVTMPMELVGTRMQT---GSESGSILQILRSIIKESGVGGLYKGLGAYFVLCLQPAIQYTVFERLKNLYLRKFKQASQ---------------ALGALEVFVLGAIARSIATIILFPYIRAKVLMQTKPKQKDARNLVKDQDISTEPKKTIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 292          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: H3GLF6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLF6_PHYRM)

HSP 1 Score: 160 bits (404), Expect = 7.950e-44
Identity = 100/244 (40.98%), Postives = 142/244 (58.20%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDG-----GHSESGKPPP-SILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKER 771
            LY G++Y   E +  K  YFY Y  L +  V  + G+P G L D+ +GY ++  HLP+T+P++LV  R+ T+   S   G   I+R I+K  G  GLY+G  AY VLCL+P +QY +F RL+G  L                       +L A +AF LGA+AR+IAT+A+FP+ RAKVL   +         ++ G+P   +I  +L  +   EGP AL++G+GPELTRG LS+ALMLMIKE+
Sbjct:   68 LYQGIQYKAAESSTSKFLYFYAYTMLAQM-VTPKDGKPIGTLTDLGIGYLSELLHLPITMPMELVGTRMQTS---SESGGILQILRSIIKENGVGGLYKGLGAYFVLCLQPTIQYTVFERLKGMYLRKFKQASQ---------------SLGALEAFMLGALARSIATLALFPYIRAKVLMQANKKKQTAVADAKQGEPKKETIASTLQRVYTEEGPLALYRGLGPELTRGALSSALMLMIKEK 292          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A484DZY2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZY2_BRELC)

HSP 1 Score: 157 bits (398), Expect = 6.190e-43
Identity = 103/248 (41.53%), Postives = 141/248 (56.85%), Query Frame = 1
Query:   58 LYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAM---------TDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERS 774
            LY G++Y  LE +  K  YFY Y  L + A A + G+P G   D+++GY ++ CHLP+T+P++LV  R+ T    + G   D IV  I++  G RG Y+G  AY VLCL+PA QY +F+RL+   L                       TL A +AF LGAIAR+IAT+ +FP+ RAKVL           T+    S +     +I  +L  +   EGP AL+ G+GPELTRG LS+ALMLMIKE+S
Sbjct:   65 LYQGIQYKALESSTSKFLYFYAYTMLAQWA-APKDGKPIGTFTDMSIGYLSELCHLPITMPMELVGTRMQTDS--NSGCIVD-IVSSIVRESGIRGFYKGLGAYFVLCLQPAFQYTVFDRLKSIYL---------------HKYNKASETLGALEAFVLGAIARSIATLVLFPYIRAKVLMQASKINNTVPTESQRKSRAVFWDKTIASTLQRVYIDEGPLALYHGLGPELTRGALSSALMLMIKEKS 293          
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Match: A0A7S4L290_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L290_GUITH)

HSP 1 Score: 155 bits (393), Expect = 4.270e-42
Identity = 100/264 (37.88%), Postives = 150/264 (56.82%), Query Frame = 1
Query:   13 LSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAVAARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGADGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAXXXXXXXXXXXXXXXXXXXXXXTLSAAQAFALGAIARAIATVAVFPFTRAKVLAMTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAALMLMIKERSGALSLQLLRS 804
            +SVA+ + +  G  G Y G +YS ++ A EKA YF+GY ++ +      G    G  + V  G  A+  HLP+TLP+  V  R+ T +G    A    I+  I++  G +GLY G  AY+VLCLKPA+ Y +F+ L+  +L                        L+A +AF +GAIARA+AT+AVFP+TRAKV+  +      + G+  PSI  ++  I + EG  +L++G  PE+TRGVLSAA+ML +KE+  A   Q++R+
Sbjct:   64 ISVAKDLYKSEGVPGFYKGFQYSAIQSATEKAIYFWGYTYILKTWKKLFG--DVGTASSVLCGCLAEWVHLPVTLPIDAVTVRIQTVKGSK--ANPLQILASIIRESGIKGLYSGWTAYIVLCLKPAITYGLFDALKRWILKRNSMRGGREVK-----------VLTALEAFLIGAIARAVATIAVFPYTRAKVIVKSS---QVQPGEQAPSIAGTVSRIVKNEGFLSLYQGCTPEVTRGVLSAAIMLAVKEKIAATVRQMVRN 309          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137336 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGU7_9STRA5.220e-166100.00Mitochondrial carrier domain-containing protein (F... [more]
D7FS27_ECTSI1.560e-5644.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6A4AHM2_9STRA2.430e-4741.94Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A662X3A5_9STRA1.350e-4642.86Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3R7FXG1_9STRA2.870e-4542.17Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4Z3D3_PHYSP3.300e-4542.44Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A3M6VNL6_9STRA4.010e-4440.89Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
H3GLF6_PHYRM7.950e-4440.98Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A484DZY2_BRELC6.190e-4341.53Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S4L290_GUITH4.270e-4237.88Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:13252..14079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137336|gw1.13.68.1
KEGG TC2.A.29.20.1
BRITEko00000,ko00001,ko01000,ko02000,ko03029,ko04031
KEGG Pathwayko04137,ko04146,ko04214,map04137,map04146,map04214
KEGG koko:K07870,ko:K13354
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0007275,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009056,GO:0009062,GO:0009791,GO:0009850,GO:0009987,GO:0010817,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016042,GO:0016054,GO:0019395,GO:0019752,GO:0019866,GO:0022857,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0034220,GO:0034440,GO:0034641,GO:0042221,GO:0042430,GO:0042445,GO:0042493,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0055114,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0072329,GO:0080024,GO:0090351,GO:0098588,GO:0098656,GO:0098805,GO:1901264,GO:1901360,GO:1901505,GO:1901564,GO:1901575,GO:1901679
Preferred namePNC1
DescriptionFMN transmembrane transporter activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4266@1|root,KOG0769@2759|Eukaryota
Evalue2.55e-57
Seed ortholog2880.D7FS27
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-16_004580.1
TranscriptId137658
TrackFilteredModels1
ProteinId137336
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137336gene_5742Tribonema minus UTEX_B_3156 geneContig_13 13252..14079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5742_1exon_5742_1Tribonema minus UTEX_B_3156 exonContig_13 13252..14079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5742CDS_5742Tribonema minus UTEX_B_3156 CDSContig_13 13252..14079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137336Trimin1|137336|gw1.13.68.1Tribonema minus UTEX_B_3156 polypeptideContig_13 13252..14079 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCCGCAGCTCCCTCTCGGTCGCCCGACACATCATACAGTGCAGGGGCGC
CGCCGGCCTCTACGACGGCGTCGAGTACAGCGTGCTGGAGGGCGCGCTGG
AGAAGGCCGCCTACTTCTACGGCTACGGCTGGCTGCGCCGCGCCGCCGTC
GCCGCACGCGGCGGCAGGCCGCCGGGCGCCCTCGCCGACGTCGCGCTCGG
CTACGCCGCGGACGCGTGCCACCTGCCGCTGACGCTGCCCCTGCAGCTGG
TGCTCGCGCGCCTGATCACGGCGCGCGGCGGCAGCGGCGGCGCCGGCGCC
GACGGCATCGTCCGCGGCATTCTCAAGACGCAGGGCTGGCGGGGGCTGTA
CAGGGGGGCGCGCGCGTACGTCGTGCTGTGCCTGAAGCCCGCGCTGCAGT
ACGCCATCTTCAACAGGCTGCGGGGGGCGGTGCTCGCGGCGGCGGCGGCG
CGGCGGCGCGGCGGCGGCAGCGGCAGCGGCGGCGCCGCCGCTCCCGCGGC
GACGACTCTGTCAGCGGCGCAGGCATTCGCGCTGGGCGCCATAGCACGCG
CCATCGCCACCGTTGCGGTATTTCCATTTACGCGTGCCAAGGTGCTGGCC
ATGACAGACGACGGTGGGCACAGTGAGAGTGGCAAACCGCCGCCCTCTAT
CCTCCAGTCGCTGGTGCTCATAGCGCGCACGGAGGGGCCGCGGGCTCTCT
TCAAGGGCGTGGGGCCGGAGCTCACGCGTGGAGTACTGAGCGCTGCCCTG
ATGCTGATGATCAAGGAGCGGTCGGGTGCGCTGTCCCTGCAGCTGCTGCG
TAGTCTGAGCGGTCATCGGCCACCACCG
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protein sequence of jgi.p|Trimin1|137336

>Trimin1|137336|gw1.13.68.1 ID=Trimin1|137336|gw1.13.68.1|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
ARSSLSVARHIIQCRGAAGLYDGVEYSVLEGALEKAAYFYGYGWLRRAAV
AARGGRPPGALADVALGYAADACHLPLTLPLQLVLARLITARGGSGGAGA
DGIVRGILKTQGWRGLYRGARAYVVLCLKPALQYAIFNRLRGAVLAAAAA
RRRGGGSGSGGAAAPAATTLSAAQAFALGAIARAIATVAVFPFTRAKVLA
MTDDGGHSESGKPPPSILQSLVLIARTEGPRALFKGVGPELTRGVLSAAL
MLMIKERSGALSLQLLRSLSGHRPPP
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mRNA from alignment at Contig_13:13252..14079-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )
GCCCGCAGCTCCCTCTCGGTCGCCCGACACATCATACAGTGCAGGGGCGC CGCCGGCCTCTACGACGGCGTCGAGTACAGCGTGCTGGAGGGCGCGCTGG AGAAGGCCGCCTACTTCTACGGCTACGGCTGGCTGCGCCGCGCCGCCGTC GCCGCACGCGGCGGCAGGCCGCCGGGCGCCCTCGCCGACGTCGCGCTCGG CTACGCCGCGGACGCGTGCCACCTGCCGCTGACGCTGCCCCTGCAGCTGG TGCTCGCGCGCCTGATCACGGCGCGCGGCGGCAGCGGCGGCGCCGGCGCC GACGGCATCGTCCGCGGCATTCTCAAGACGCAGGGCTGGCGGGGGCTGTA CAGGGGGGCGCGCGCGTACGTCGTGCTGTGCCTGAAGCCCGCGCTGCAGT ACGCCATCTTCAACAGGCTGCGGGGGGCGGTGCTCGCGGCGGCGGCGGCG CGGCGGCGCGGCGGCGGCAGCGGCAGCGGCGGCGCCGCCGCTCCCGCGGC GACGACTCTGTCAGCGGCGCAGGCATTCGCGCTGGGCGCCATAGCACGCG CCATCGCCACCGTTGCGGTATTTCCATTTACGCGTGCCAAGGTGCTGGCC ATGACAGACGACGGTGGGCACAGTGAGAGTGGCAAACCGCCGCCCTCTAT CCTCCAGTCGCTGGTGCTCATAGCGCGCACGGAGGGGCCGCGGGCTCTCT TCAAGGGCGTGGGGCCGGAGCTCACGCGTGGAGTACTGAGCGCTGCCCTG ATGCTGATGATCAAGGAGCGGTCGGGTGCGCTGTCCCTGCAGCTGCTGCG TAGTCTGAGCGGTCATCGGCCACCACCG
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Coding sequence (CDS) from alignment at Contig_13:13252..14079-

>mRNA_5742 ID=mRNA_5742|Name=jgi.p|Trimin1|137336|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_13:13252..14079- (Tribonema minus UTEX_B_3156 )
GCCCGCAGCTCCCTCTCGGTCGCCCGACACATCATACAGTGCAGGGGCGC
CGCCGGCCTCTACGACGGCGTCGAGTACAGCGTGCTGGAGGGCGCGCTGG
AGAAGGCCGCCTACTTCTACGGCTACGGCTGGCTGCGCCGCGCCGCCGTC
GCCGCACGCGGCGGCAGGCCGCCGGGCGCCCTCGCCGACGTCGCGCTCGG
CTACGCCGCGGACGCGTGCCACCTGCCGCTGACGCTGCCCCTGCAGCTGG
TGCTCGCGCGCCTGATCACGGCGCGCGGCGGCAGCGGCGGCGCCGGCGCC
GACGGCATCGTCCGCGGCATTCTCAAGACGCAGGGCTGGCGGGGGCTGTA
CAGGGGGGCGCGCGCGTACGTCGTGCTGTGCCTGAAGCCCGCGCTGCAGT
ACGCCATCTTCAACAGGCTGCGGGGGGCGGTGCTCGCGGCGGCGGCGGCG
CGGCGGCGCGGCGGCGGCAGCGGCAGCGGCGGCGCCGCCGCTCCCGCGGC
GACGACTCTGTCAGCGGCGCAGGCATTCGCGCTGGGCGCCATAGCACGCG
CCATCGCCACCGTTGCGGTATTTCCATTTACGCGTGCCAAGGTGCTGGCC
ATGACAGACGACGGTGGGCACAGTGAGAGTGGCAAACCGCCGCCCTCTAT
CCTCCAGTCGCTGGTGCTCATAGCGCGCACGGAGGGGCCGCGGGCTCTCT
TCAAGGGCGTGGGGCCGGAGCTCACGCGTGGAGTACTGAGCGCTGCCCTG
ATGCTGATGATCAAGGAGCGGTCGGGTGCGCTGTCCCTGCAGCTGCTGCG
TAGTCTGAGCGGTCATCGGCCACCACCG
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