mRNA_5722 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349427
Unique Name	mRNA_5722
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: A0A836CC25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC25_9STRA)

HSP 1 Score: 1037 bits (2682), Expect = 0.000e+0
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 1

Query:    1 MQVLDDVEAKMRLELDWQRYCAARPKFERVLXXXXXXXXXXXXXXXXXXXLLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPRLDAQNFVDACREGDIAQVQRRLLQGADPDAVDAQGNTGAHAAAAEARLDVLAALAXXXXXXEARNARMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAYSPACSATSAVAKADSPVALLLLSLLXXXXXXXXXXXXXXPPLPXXXXLXXXXXXXXXXXXXXXXXLPPSLXXXXXXXXXXXXXXSLPLXXXXXXXXXXXXXXXXXXPLLRDGMHVRDTLAKVRAARPCTAVTRAVAAALQALQDDFVAERNRRLEARVRNAPILSIGF 1980
            MQVLDDVEAKMRLELDWQRYCAARPKFERVLXXXXXXXXXXXXXXXXXXXLLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPRLDAQNFVDACREGDIAQVQRRLLQGADPDAVDAQGNTGAHAAAAEARLDVLAALAXXXXXXEARNARMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAYSPACSATSAVAKADSPVALLLLSLLXXXXXXXXXXXXXXPPLPXXXXLXXXXXXXXXXXXXXXXXLPPSLXXXXXXXXXXXXXXSLPLXXXXXXXXXXXXXXXXXXPLLRDGMHVRDTLAKVRAARPCTAVTRAVAAALQALQDDFVAERNRRLEARVRNAPILSIGF
Sbjct:    1 MQVLDDVEAKMRLELDWQRYCAARPKFERVLXXXXXXXXXXXXXXXXXXXLLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPRLDAQNFVDACREGDIAQVQRRLLQGADPDAVDAQGNTGAHAAAAEARLDVLAALAXXXXXXEARNARMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAYSPACSATSAVAKADSPVALLLLSLLXXXXXXXXXXXXXXPPLPXXXXLXXXXXXXXXXXXXXXXXLPPSLXXXXXXXXXXXXXXSLPLXXXXXXXXXXXXXXXXXXPLLRDGMHVRDTLAKVRAARPCTAVTRAVAAALQALQDDFVAERNRRLEARVRNAPILSIGF 660

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 4.780e-63
Identity = 170/483 (35.20%), Postives = 243/483 (50.31%), Query Frame = 1

Query:   28 KMRLELDWQRYCAARPKFERVLXXXXXXXXXXXXXXXXXXXLLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVAQLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLTGAWESLAALRRRGCLLADPRLDAQNFVDACREGDIAQVQRRLLQGADPDAVDAQGNTGAHAAAAEARLDVLAALAXXXXXXEARNARMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTAVLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGVCGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAY 1476
            K+ L+  W++YCA  P +E++L                   +LAHGR +A+ ++ E  AA  +TDDHV A +R + +G++FP++++GF++ +LF      G   + LE +PF+ VL  + AAPRPHTL   RYD   + LT  WE+L  +R++G  + D R +   FV AC EGDI ++Q RL +G D ++ D QGNTG H AAA +         XXXXXX                                                A+++ S    AL +D   ++   D QWGWT LH AAH G ++ +  LL +RAS YA S  GQTPL VA  A+Q     LL A    EPAH V + +    IW GS AAA   WA D+GF  +LS+ D    +  + + WL E D    HL +EA +     +   RAW  +   AQ     ++F+  A RRR ++L+HC +GR     +  AY
Sbjct:  116 KLELQSQWEKYCAMEPMYEKILAAKEQYDLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIRVGFIITRLF------GIVNLNLEDVPFEEVLLELKAAPRPHTLEFLRYDMNFNRLTLKWETLEEVRQQGKYVRDAREERLYFVKACAEGDIDRLQIRLDRGEDVESTDLQGNTGMHVAAANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXAILSKSEVMAALFMDYSVALQATDVQWGWTALHCAAHVGMVKVVENLLGKRASPYAESKIGQTPLDVASRARQIKTTALLEAFLRAEPAHEV-IAEAGANIWQGSHAAAHPVWASDQGFECILSIVD--PRFPDKKLGWL-EDDGDVRHLRVEAEVDDEDTSP--RAWNNI---AQHTRVIISFLYTAVRRRKKILVHCRNGRSTSVAMLTAY 581

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: A0A381XMI9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381XMI9_9ZZZZ)

HSP 1 Score: 60.8 bits (146), Expect = 5.110e-6
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 1

Query:  838 AVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRAR 1086
            A  A   E   L L++GA    +    GWTPLH AA  G+   I+LLL RRA + A+S  G TPL +A+G +Q AAA LL+AR
Sbjct:  252 AAEADQAEAAELLLNHGADKTAR-TDGGWTPLHSAAAKGSTNVIALLLKRRAPVNAISQSG-TPLDLAKGYQQPAAAELLQAR 332

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: A0A432F1V5_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A432F1V5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.390e-5
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1

Query:  859 ECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRAR 1086
            E   L L++GA    +    GWTPLH AA  G+   I+LLL RRA + A+S  G TPL +A+G KQ AAA L+ A+
Sbjct:  259 EAAELLLNHGADKSAR-TDGGWTPLHSAAAKGSTNVIALLLKRRAPVNAISQSG-TPLDLAKGYKQPAAAALIEAK 332

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: A0A2D5WDR6_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5WDR6_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-5
Identity = 40/83 (48.19%), Postives = 47/83 (56.63%), Query Frame = 1

Query:  838 AVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRAR 1086
            A  A   E   L L +GA    +    GWTPLH AA  G+   ISLLL RRA + A+S  G TPL +A G KQ AAA LL A+
Sbjct:  273 AAEADQAEAAELLLKHGADKTAR-TDGGWTPLHSAAAKGSTNVISLLLLRRAPVNAISQSG-TPLDLARGYKQPAAAALLEAK 353

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BLAST of jgi.p|Trimin1|349427 vs. uniprot
Match: A0A6I2L406_9BURK (Ankyrin repeat domain-containing protein n=1 Tax=Duganella guangzhouensis TaxID=2666084 RepID=A0A6I2L406_9BURK)

HSP 1 Score: 55.5 bits (132), Expect = 7.410e-5
Identity = 61/209 (29.19%), Postives = 94/209 (44.98%), Query Frame = 1

Query:  487 GCLLADPRLDAQ------NFVDACREGDIAQVQRRLLQGADPDAVDAQGNTGAHAAAAEARLDVLAALAXXXXXXEARNARMETPLLHAVRRGSASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVHKKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGAKQEAAARLLRARAAD 1095
            G  LA P + A+      +F  A +   + +V++ L +G +P+A DA G TG   A     L+V   L             M TP +  +   + +G  AL++  +R       + +  V+ L             L +GA V++K    GWT LH+AA +G+++  +LLL + A I A S  G TPL +A    QE    LL    AD
Sbjct:   12 GAALALPAMAAEQSDDEVDFFRAAQLDGVERVKKALARGVNPNARDANGETGLIVAMRYEALNVGRLL-------------MNTPGID-LEAKAPNGNTALMMAAFR-------QNKPAVLEL-------------LKHGAQVNQK----GWTALHYAAAAGSVELTALLLDKHAYIDAESPSGMTPLMIAAREGQEDVVALLLKEGAD 182

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349427 vs. uniprot

BLAST of jgi.p|Trimin1|349427 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A836CC25_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LNE8_ECTSI	4.780e-63	35.20	Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
A0A381XMI9_9ZZZZ	5.110e-6	46.99	Uncharacterized protein (Fragment) n=1 Tax=marine ...	[more]
A0A432F1V5_9BACT	1.390e-5	47.37	Uncharacterized protein n=1 Tax=Verrucomicrobia ba...	[more]
A0A2D5WDR6_9BACT	1.450e-5	48.19	Uncharacterized protein n=2 Tax=Verrucomicrobiales...	[more]
A0A6I2L406_9BURK	7.410e-5	29.19	Ankyrin repeat domain-containing protein n=1 Tax=D...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_42	contig	Contig_42:888303..895505 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349427\|estExt_Genemark1.C_Ctg_420117
Description	spectrin binding
COG category	I
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Evalue	2.88e-65
Seed ortholog	2880.D8LNE8
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-04_004120.1
TranscriptId	349749
Track	FilteredModels1
ProteinId	349427

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349427	gene_5722	Tribonema minus UTEX_B_3156	gene	Contig_42 888303..895505 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349427	Trimin1\|349427\|estExt_Genemark1.C_Ctg_420117	Tribonema minus UTEX_B_3156	polypeptide	Contig_42 888303..895230 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5722_1	exon_5722_1	Tribonema minus UTEX_B_3156	exon	Contig_42 888303..888687 +
exon_5722_2	exon_5722_2	Tribonema minus UTEX_B_3156	exon	Contig_42 889109..889270 +
exon_5722_3	exon_5722_3	Tribonema minus UTEX_B_3156	exon	Contig_42 890083..890284 +
exon_5722_4	exon_5722_4	Tribonema minus UTEX_B_3156	exon	Contig_42 890631..890754 +
exon_5722_5	exon_5722_5	Tribonema minus UTEX_B_3156	exon	Contig_42 891130..891189 +
exon_5722_6	exon_5722_6	Tribonema minus UTEX_B_3156	exon	Contig_42 892055..892156 +
exon_5722_7	exon_5722_7	Tribonema minus UTEX_B_3156	exon	Contig_42 893297..893403 +
exon_5722_8	exon_5722_8	Tribonema minus UTEX_B_3156	exon	Contig_42 893915..894250 +
exon_5722_9	exon_5722_9	Tribonema minus UTEX_B_3156	exon	Contig_42 894335..894375 +
exon_5722_10	exon_5722_10	Tribonema minus UTEX_B_3156	exon	Contig_42 894693..894969 +
exon_5722_11	exon_5722_11	Tribonema minus UTEX_B_3156	exon	Contig_42 895044..895505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5722	CDS_5722	Tribonema minus UTEX_B_3156	CDS	Contig_42 888303..888687 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_5722	UTR3_5722	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_42 895231..895505 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_42:888303..895505+
coding sequence from alignment at Contig_42:888303..895505+

spliced messenger RNA

>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Trimin1|349427|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2258bp|location=Sequence derived from alignment at Contig_42:888303..895505+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTCCTCGACGACGTCGAAGCCAAGATGCGCCTCGAGCTCGACTG
GCAGCGCTACTGCGCGGCGCGCCCCAAGTTCGAGCGCGTCCTCGCGGCAG
AGGCGGAGGCCGACCGTGCCGTCGCCGCGCGCGACAGCGCTCAGCGCGCG
CTCCTTGCGCACGGCCGCGTTCTTGCGGAGCGGCGCCAGCGCGAGCGCGC
CGCGGCGGCGGCAGTTACAGATGACCACGTGACGGCGGCGGAGCGCGTGC
AGGGGGTGGGGAATTTGTTTCCCGCGGTGCAGATGGGGTTTGTGGTCGCG
CAGCTGTTTGATGGCGGCGGCGGCGGCGGAGAGGCGGCGGTGGCGCTGGA
GGCGCTGCCATTTCAGGCGGTGCTCGACAGGATAGGCGCGGCGCCGCGGC
CGCACACGCTCGCGCTGGCGCGCTACGACTACCGCCGCAGCGGCCTCACG
GGCGCGTGGGAGTCGCTGGCGGCGCTGCGGCGGCGCGGCTGCCTGCTGGC
GGACCCGCGCCTCGATGCGCAGAACTTCGTCGACGCGTGCCGCGAAGGTG
ACATTGCTCAGGTGCAGCGCCGCCTGCTGCAGGGCGCGGACCCCGACGCC
GTGGACGCGCAGGGCAACACAGGCGCGCACGCCGCGGCGGCGGAAGCGCG
CCTCGACGTGCTGGCGGCGCTCGCGGCCGCGGGCGCGGCGGCGGAGGCGC
GCAATGCGCGCATGGAGACGCCGCTGCTGCACGCCGTGCGCCGCGGCAGC
GCGAGCGGCGCAGCGGCGCTGCTGCTGCCGCCGTGGCGCGCGGCGCTGGG
CGCGCTGGACAGGGGGCGCAGGGGGGTGGTGGCGCTTGCGGTGATGGCGG
GGAGCATGGAGTGCCTGGCGCTGGCACTGGACAATGGCGCGAGCGTTCAC
AAGAAGGACGCGCAATGGGGCTGGACACCGCTGCATCACGCGGCGCACAG
CGGCGCCCTGCAGGCCATCTCGCTGCTGCTGTCGCGGCGCGCAAGCATCT
ACGCGCTGAGCGATGAGGGGCAAACGCCACTTCAGGTGGCAGAGGGCGCC
AAGCAGGAAGCGGCGGCACGGCTGCTGCGCGCGCGCGCCGCCGACGAGCC
CGCGCACGTCGTCATGGTGCTGGACAACAGCACGGAGATCTGGCTCGGCA
GCTGCGCGGCGGCGCGCGCCGGCTGGGCGCAGGACCGCGGCTTCACGGCA
GTGCTCAGCGTAAACGACGGCGGCGAGGAGTGGTCGCAGCGCGCCGTCGC
GTGGCTCGCGGAGCCCGACTGTAGCACGGCTCATCTGCTCATCGAGGCGC
CGCTGGGGGGGGCGGGGGGCGCAAAGGGGGGGCGCGCGTGGGGCGGCGTG
TGCGGCAGCGCTCAGGGCTTGGCGAGCGCTGTGGCGTTCATCGACGCGGC
GCGGCGGCGGCGCGCGCGCGTGCTGCTGCACTGCTCCGACGGGCGGTGCG
CGTGCGCGGGCGTGTGGGCCGCGTACAGCCCTGCGTGCTCTGCAACGTCG
GCGGTGGCCAAGGCGGACTCTCCTGTTGCACTGCTGCTGCTGTCGCTGCT
GCTGCTGCCGCCACTGCTTGCGCTGCCGCCACCACCACTGCTGCCACCGC
TGCCGCCACCGCCACCGCTGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCG
CCGCCGCCGCTGCCGGCACCGCTGCCGCCGTCGCTGCCGCTGCTTCCTGC
GCTGCCGCCGCCGCCACCGCTGCCGCCGTCGCTGCCGCTGCCGCCGCCGC
CGCCGCTGCCGGCACCGCTGCCGCCGTCGCTGCCGCCGCTGCCGCCGCTG
CTGCGCGACGGCATGCACGTGCGCGACACGCTCGCCAAGGTGCGCGCCGC
GCGGCCGTGCACGGCGGTGACGCGCGCCGTCGCCGCCGCGCTGCAGGCGC
TGCAGGACGACTTTGTGGCGGAGCGCAACCGCCGCCTCGAGGCGCGCGTG
CGTAACGCCCCGATTCTCTCCATCGGCTTCTGAAGGGAGCTGCGGTTTGC
TTTAGGAAGGGGACATGGCGCGCCGCAGGGGTGTTTGCGCCGGTGCTGCG
CGCACGCATGCGCGCAAAGACTGCATGGCGGATACTGCACGGGTACGCTG
CAGCATGCCAGCTCAGCTATAGCAGCAGCACTGCACGTCACGATGCTGTG
GCTGAACAAATCCTGTGAGGCGGAGCCGGAAGCATGCGCGCTGCTGCGGC
CTGCGAACCGCGGCTGCTCGTAATGCAAGCCCCAAGTAAACAAAGCGCCC
TGCGCCGG

protein sequence of jgi.p|Trimin1|349427

>Trimin1|349427|estExt_Genemark1.C_Ctg_420117 ID=Trimin1|349427|estExt_Genemark1.C_Ctg_420117|Name=jgi.p|Trimin1|349427|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=661bp
MQVLDDVEAKMRLELDWQRYCAARPKFERVLAAEAEADRAVAARDSAQRA
LLAHGRVLAERRQRERAAAAAVTDDHVTAAERVQGVGNLFPAVQMGFVVA
QLFDGGGGGGEAAVALEALPFQAVLDRIGAAPRPHTLALARYDYRRSGLT
GAWESLAALRRRGCLLADPRLDAQNFVDACREGDIAQVQRRLLQGADPDA
VDAQGNTGAHAAAAEARLDVLAALAAAGAAAEARNARMETPLLHAVRRGS
ASGAAALLLPPWRAALGALDRGRRGVVALAVMAGSMECLALALDNGASVH
KKDAQWGWTPLHHAAHSGALQAISLLLSRRASIYALSDEGQTPLQVAEGA
KQEAAARLLRARAADEPAHVVMVLDNSTEIWLGSCAAARAGWAQDRGFTA
VLSVNDGGEEWSQRAVAWLAEPDCSTAHLLIEAPLGGAGGAKGGRAWGGV
CGSAQGLASAVAFIDAARRRRARVLLHCSDGRCACAGVWAAYSPACSATS
AVAKADSPVALLLLSLLLLPPLLALPPPPLLPPLPPPPPLPPSLPLPLPP
PPPLPAPLPPSLPLLPALPPPPPLPPSLPLPPPPPLPAPLPPSLPPLPPL
LRDGMHVRDTLAKVRAARPCTAVTRAVAAALQALQDDFVAERNRRLEARV
RNAPILSIGF*

mRNA from alignment at Contig_42:888303..895505+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Trimin1|349427|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7203bp|location=Sequence derived from alignment at Contig_42:888303..895505+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTCCTCGACGACGTCGAAGCCAAGATGCGCCTCGAGCTCGACTG
GCAGCGCTACTGCGCGGCGCGCCCCAAGTTCGAGCGCGTCCTCGCGGCAG
AGGCGGAGGCCGACCGTGCCGTCGCCGCGCGCGACAGCGCTCAGCGCGCG
CTCCTTGCGCACGGCCGCGTTCTTGCGGAGCGGCGCCAGCGCGAGCGCGC
CGCGGCGGCGGCAGTTACAGATGACCACGTGACGGCGGCGGAGCGCGTGC
AGGGGGTGGGGAATTTGTTTCCCGCGGTGCAGATGGGGTTTGTGGTCGCG
CAGCTGTTTGATGGCGGCGGCGGCGGCGGAGAGGCGGCGGTGGCGCTGGA
GGCGCTGCCATTTCAGGCGGTGCTCGACAGGATAGGTGAGGGGCGCTAGG
GTTGTGTGAGGTGTGCGCACGGTCGGATGCGCGACGGACTGGTGATGGAT
GTCGGGATGGCAGAACGTATGCATGAAGGCAAGCGAGGGGTTTCGTTTGG
CCTTCTCGCGTGCGCAGCGCATGCGGCACCGTTGTCTACCATTGCCCATA
GTGCGACTGACTGTCACTGAACTAAATGCGCAAACAGTGCTGCCTCGTCT
GTTAATGCACAGCTGAGCTGCTCGCAGCCCGCAGGAGCGTCGTAGTTGGC
ACAGTGACTCATCGACACATGCCGCTGCTGCTGCGCCACCGCCACCGGCC
ATGCGCCTCGTGCCCGCCAAAAACACTAACGTCACCATGCCATTCACACC
GCGGCTCCGACAATCTGCTGCATGCGTGCGCTGCATCTTACGTCGCCCCG
CAACAGGCGCGGCGCCGCGGCCGCACACGCTCGCGCTGGCGCGCTACGAC
TACCGCCGCAGCGGCCTCACGGGCGCGTGGGAGTCGCTGGCGGCGCTGCG
GCGGCGCGGCTGCCTGCTGGCGGACCCGCGCCTCGATGCGCAGAACTTCG
TCGACGCGTGCCGCGAAGGTGAGGGGGGGCGAGTTCCGGCGAGACAGCGC
TCAGCGCTGTGCCAAAGTGCACTGTATGTGCACAATGGTGTTACATGCAA
GGAGTCCTCAGAGTTGTAGTGAGCAGTCCCGTGCAGGGGCCGCGGCAGGC
GGTGTGTATTGCCAGCGCCGACAGTGGCGGCGGCGGCGGCAGCGGCAGCA
CGTGAGGGGGGGCCAGTACGGGCAAGGCAGCGCTCAGCGCTGTGCCAATG
CGGCATTGTGTGCATGTGACGGTGTTGTGTTTCTGCTTCATGAGCTTGGT
GCGCAGTTCTGTACAGGGGCCGTGGCGTGCCGCATGTCATATGGCCAGTG
CTGACGGTGGTGGTAGACGCAGTGGCAGCGCGCGTGTGACGCCTCGTCGG
CATGCGCTGAGAGGGATGGTAATGTCATACTGAGGGGACAGTGCCCGCAA
GTCTGCATTGTGAGCGAGAGGGGCGGCTGTACCTGAGGCATGGAACCCTG
CCTTGGAATGCTCCGCAGAGGACCGTTTGCTGAACGCTGCCTGCGCTTCA
AGGTTTGTAGGTCTTCTTCTCAGGCATGGGGCAGCGCAATGGAACCTGTG
CCAGCGTGCGCCATGCGCGTGCGCAGAGCTCATCAACGCTCGCAAGATTT
GTTTTCAGATGGAGTCAGGACGGCGCTCGCTTTCAATGACCCCGCTGAGG
TCACTCTGTTTGTGGAGCTTGGAGACGTGAGCGACGCAATCACCACTGAC
GTGCGGCAGCACGCGCCGGTCATCAGGCGTGCAGCCCCTCGCCAACCTGG
CCCTCTCATCCCCCCCTCCCCCCCGCGCAGGTGACATTGCTCAGGTGCAG
CGCCGCCTGCTGCAGGGCGCGGACCCCGACGCCGTGGACGCGCAGGGCAA
CACAGGCGCGCACGCCGCGGCGGCGGAAGCGCGCCTCGACGTGCTGGCGG
CGCTCGCGGCCGCGGGCGCGGCGGCGGAGGCGCGCAATGCGCGCATGGAG
ACGCCGCTGCTGCACGCCGTGCGCCGCGGCAGGTGCGCTTTCTGTTCCAA
CAGTGGTTGTGTTGTGCCCTCCGTTCCGACAGGCGATGAGCGCACACAAA
CACGGTCGCCGTTTTACCGCGTTGTGAGGCGTGCCATCACAGCTGCGCAC
GTAGGCAGGTGCGCCCTCTGTTCAGACAGTCGATGAGCGCACGCGAACAC
GGTCGCCGTTTTACCACTCTGTGAGGCGTGCCGTCACAGCTGCGCGCGTA
CTTCAAGTGTATCTCCGCGTCGGTGCGTCGGCGCTCTGTGCATGTGAGCC
CGCCCGCGTACGCTGGCACTACGCAGCGGAAGCTGACTCTCATGTCCTGT
GGGTGACTTGTCGTTCCGTTTGTGGCAGCGCGAGCGGCGCAGCGGCGCTG
CTGCTGCCGCCGTGGCGCGCGGCGCTGGGCGCGCTGGACAGGGGGCGCAG
GGGGGTGGTGGCGCTTGCGGTGATGGCGGGGAGCATGGAGTGCCTGGCGC
TGGTGAGCCATGTGCGCGCATGTGTGGAAGTGTTTTGGGGAGAATGGAGA
GAATTAGTGGGTGGGGCAGTGCGTGGAGAGGTGTCGGGAACGGCAGCGCG
GCATGCGGTGTTGTTGCCGTGGCGCGTGAGCTGAGTGGCGCGCAGGAACG
CATCTAAGCAGGTGAGGCATGCAAGGCTTACGGTTACATTTAAATGCACA
CACACACGGGCACACACATATGTTCATCTTCAAAGTACTTCAAGACGCAC
ATGTACAACATGTAGTAGATACACATACATGCACATGCTCTGGTTATGCC
CGGTGCGCAGGCAGGCTTGCAGCCAATGCACGTGCTGCCGCAATCTCACG
CCCGCCGCCGTCACTTGCACCCCGCAGGCACTGGACAATGGCGCGAGCGT
TCACAAGAAGGACGCGCAATGGGGCTGGACACCGCTGGTGAGTGGCATTG
CTCAGTAAGAACAGGCACGACACAAATTCGTGTTCTATGGTACTTGTTGA
TGTTGACCTGCTCGTATTGGACGGCGCTAGTGAGGCGCTGCGCATACTGA
TGGTGCCCATGTAGGGTGTGGGGTTAGGGTTGTTTGCTGGCGCATCGCGC
GCGCAAGAGGGTCTGAACGCTCTTAGGGGTTTGGGGTTAGTGACATGCCA
TTGCTCCGCACAAAGAGGTGCTCTTCACTTACCGAACCTCTATGATGTAA
ACTACTTCAAAACACAGGAGCAACACGGCTTAAGTTGACCGCCTCAACCT
CAATCGAAGCCACACCTCGTGACATGAGGTTTGTTCTGCCTAATGCTGCT
GGTCACCGTGATGCCAGCACTACGTCCCAGACAGGCGAATGCATCAATGC
TGACCTTGTGATGCACTGCTGGACAATGGTATTCGTGCTGCGGCCGAAAA
CGAGCTGCCCTCACATGCTCATGGCGGCTCGCGCATCATCAGAGCCTCTA
TTGAGAGCTTGGGCACCAATGACGCTGCAGCAGACTGCGTCTGTACCGTC
GCGCAACACGTAGAGGCTCAGGGCCGCTCTTGTCGCACAGCTGCCTGCCA
ATCCATGATCGCACACATCACGGCACGGGCAACTTCACTTCAAGTTCAAG
CACGGGCTGCAGATTGAGACAACAGGACCCCACATTGCTCCACCAGAGAG
AAAAATCCGCCTTGTGCCCAGCATGTGTTTTTGGAAGCATGCCATTCAAG
TATGACCCCCACGTGCATCTCAGCACCACCCACGATCCATGAGTCATGGC
AGTCGCCTCAACCCTTTCCATGCCTGCCTGCGCCCCTTGTGACGATGCAC
AGCATCACGCGGCGCACAGCGGCGCCCTGCAGGCCATCTCGCTGCTGCTG
TCGCGGCGCGCAAGCATCTACGCGCTGAGCGATGAGGGGCAAACGCCACT
TCAGGTGTGACACTCCCCGCCCCCCCACATGTTGCAGTGGTTCCCCCCCC
CGTTTGTGGTCCCCCCTTGAGGCGGTCGTGATGAGAGCATTGCGTGCTGG
TGACACGATTTCTTCCATGTACTTGGGGGATTGTGTGTCTGCTTCGATGC
GTCATTTCGCTGCATGCGCGTTAGCAGCAGTACTGTAGCGATCACTGCAT
TAGGGTGGGGTGCGATATGCCTAGGCGCTCCCTGGCACTGAAAGCCAGTC
GCCAACAGTGTTGTGTGTGTAGTGTACGATACTGCACATAGTTTATGCTT
CAAAGTATCATAGAGGGGGTGTCGCCCCTCAAGCGAGAGTAAACAAAGTA
CAGGCGCGGGAGGCGGACGATGAGAGGCCGGCACATGGTCATTGCTGTGT
TAAATGCAGTGCGGTGGGACATGCTGCGCAGCCGCGAGTGCAGGCGCGCG
TGAGTGCCAACAGTGTGGTGTGCATACTCTACATACTCTGTGTATGCTGC
AAAGTGTCCTACAGGGGTTTTCGCCCCTCAATCAAGAGTACATGAAGTGC
AAGTACGGGAGAAGGACAGTGGTGGGCCGGCACATGGTCACTACTGAGTT
CAGTGGAGTGCAGTGGTAGCTGCGCAGCCATGAGTGCAGGTGCGCGTGAG
TGCGCGACGACACGCTTCATGAGCGCCCAGGTGATGTCGATATGACGCAC
TGTCATACAGGAACCGACATGCATTGTATCGACAACACCTGGGCGCACGC
TCAACAAAGGCGCGCTCCATTGCCTCGGCCTGCCCCGATAGGCGGCAAAG
GTCGACAACCAGGAAGCAGTGGCACAAGCGCACAATTCCGCCGTCAGAAA
TGCTTGCAGGCCACAGCGACACGTCAGATGAAATCAAGTATTCCATGTAC
GAATTTCATGTGCGCGGTACATCGCCACCTGCTGTGCCAGGTGGCGGAGG
GAGCGACGACCAACTGCATAATACAAAAGAAGTAGTTTGAACTTGAAGTA
CTTGAACAAGAGCTTCAAATTCAGCTAACTTCAAGCGAAACGCCAGTTAC
CAATCTGTGACATGGCCGCGCATGTAAAAATCATGAGTTCCATGCGCGAC
CTTCATACACAGCACGTGTGATCTTGCACTGCCTACCCTATCAGGTGGCA
GAGGGCGCCAAGCAGGAAGCGGCGGCACGGCTGCTGCGCGCGCGCGCCGC
CGACGAGCCCGCGCACGTCGTCATGGTGCTGGACAACAGCACGGAGATCT
GGTGAGTCGCGCTGCCGCAATCGCTGGGCACAGCCAGGCGTACTGGTTGT
TTACTGCTGAAGTAAAGTACTTTTTATTAATTCTCGCTCAGGGCGCGAAA
AAGCCCAGATGATTGGCATCTAGCTGTAAGGAATCTAAATGTCGTAAAGT
ACTTGTGATATGTGTGTACTTCGCAAGAATGCTTCAAATTACAGCGATGC
GATCACGTCACGTCGTTACGAGTTTCATCTGCATGAGGAGCATCGTGCTC
CATGCACATTCCATGCGCTGCGAATCACTGCTCAACCCGCTGACATCATC
ATTACCATCTGCATGTGGTAGCAATCATTCATGAGTCGACGACACGGAGC
TCAGCATCAGCAAGGCAGCTTGCTACACGTGTACACGTCTCACAAACAAA
ATACACAGCCAGAATCCGCGCCGCGCTACCTGCACTGCACTGTCCCACGA
CTCACTCACCCCCGCCCACCCCCCCCGCTCCCTACACACCGCCCCCTGAC
ACCCGGGAGCAGGCTCGGCAGCTGCGCGGCGGCGCGCGCCGGCTGGGCGC
AGGACCGCGGCTTCACGGCAGTGCTCAGCGTAAACGACGGCGGCGAGGAG
TGGTCGCAGCGCGCCGTCGCGTGGCTCGCGGAGCCCGACTGTAGCACGGC
TCATCTGCTCATCGAGGCGCCGCTGGGGGGGGCGGGGGGCGCAAAGGGGG
GGCGCGCGTGGGGCGGCGTGTGCGGCAGCGCTCAGGGCTTGGCGAGCGCT
GTGGCGTTCATCGACGCGGCGCGGCGGCGGCGCGCGCGCGTGCTGCTGCA
CTGCTCCGACGGGCGGTGCGCGTGCGCGGGCGTGTGGGCCGCGTACAGGT
GGGTTTTTCGTTTTTGTGTGTCCGTGTCTGAGGATGAGCGCTGCTGCAGA
TTGCGGATGGGCGCGCCACGCTGACGTGGCAGCCCTGCGTGCTCTGCAAC
GTCGGCGGTGGCCAAGGCGGACTGTTGCGGAATGACGCAATGATTTGCAA
GCTGGAGTATGGTGCAGTTGCAAGCACGTGAGGCGAAGCGTGAATCCAAG
AAGAGCATCACTGCTATGAAGGAGGCACTGCAGGCATGGAAGGCGGGCAA
CAACCATCGTGAGCACCAGGTTGCAGTAGGCAAGCCCCCAAGGTCGACAT
TCAGAATCAACTATCTGAGAAGCAGTAGTTCCATTAGTGGCGGGATCTGC
TGTTGCGCCATGACAACGCAACAGCCCTCCAAACCCCCTGATCTTGTGTC
CCAGCATATGTGCTCCTTTACCGGCAATTGGCTGACTGAGCTCCTGTTGC
ACTGCTGCTGCTGTCGCTGCTGCTGCTGCCGCCACTGCTTGCGCTGCCGC
CACCACCACTGCTGCCACCGCTGCCGCCACCGCCACCGCTGCCGCCGTCG
CTGCCGCTGCCGCTGCCGCCGCCGCCGCCGCTGCCGGCACCGCTGCCGCC
GTCGCTGCCGCTGCTTCCTGCGCTGCCGCCGCCGCCACCGCTGCCGCCGT
CGCTGCCGCTGCCGCCGCCGCCGCCGCTGCCGGCACCGCTGCCGCCGTCG
CTGCCGCCGCTGCCGCCGTCGCTGCCGCTGCTTCCTGCGCTGCCGCCGCC
GCTGCCTGCGCTGCCACCGCACCGCGCTTGCGCCGCGGCAGGCTGCTGCG
CGACGGCATGCACGTGCGCGACACGCTCGCCAAGGTGCGCGCCGCGCGGC
CGTGCACGGCGGTGACGCGCGCCGTCGCCGCCGCGCTGCAGGCGCTGCAG
GACGACTTTGTGGCGGAGCGCAACCGCCGCCTCGAGGCGCGCGTGCGTAA
CGCCCCGATTCTCTCCATCGGCTTCTGAAGGGAGCTGCGGTTTGCTTTAG
GAAGGGGACATGGCGCGCCGCAGGGGTGTTTGCGCCGGTGCTGCGCGCAC
GCATGCGCGCAAAGACTGCATGGCGGATACTGCACGGGTACGCTGCAGCA
TGCCAGCTCAGCTATAGCAGCAGCACTGCACGTCACGATGCTGTGGCTGA
ACAAATCCTGTGAGGCGGAGCCGGAAGCATGCGCGCTGCTGCGGCCTGCG
AACCGCGGCTGCTCGTAATGCAAGCCCCAAGTAAACAAAGCGCCCTGCGC
CGG

Coding sequence (CDS) from alignment at Contig_42:888303..895505+

>mRNA_5722 ID=mRNA_5722|Name=jgi.p|Trimin1|349427|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1983bp|location=Sequence derived from alignment at Contig_42:888303..895505+ (Tribonema minus UTEX_B_3156 )
ATGCAGGTCCTCGACGACGTCGAAGCCAAGATGCGCCTCGAGCTCGACTG
GCAGCGCTACTGCGCGGCGCGCCCCAAGTTCGAGCGCGTCCTCGCGGCAG
AGGCGGAGGCCGACCGTGCCGTCGCCGCGCGCGACAGCGCTCAGCGCGCG
CTCCTTGCGCACGGCCGCGTTCTTGCGGAGCGGCGCCAGCGCGAGCGCGC
CGCGGCGGCGGCAGTTACAGATGACCACGTGACGGCGGCGGAGCGCGTGC
AGGGGGTGGGGAATTTGTTTCCCGCGGTGCAGATGGGGTTTGTGGTCGCG
CAGCTGTTTGATGGCGGCGGCGGCGGCGGAGAGGCGGCGGTGGCGCTGGA
GGCGCTGCCATTTCAGGCGGTGCTCGACAGGATAGGCGCGGCGCCGCGGC
CGCACACGCTCGCGCTGGCGCGCTACGACTACCGCCGCAGCGGCCTCACG
GGCGCGTGGGAGTCGCTGGCGGCGCTGCGGCGGCGCGGCTGCCTGCTGGC
GGACCCGCGCCTCGATGCGCAGAACTTCGTCGACGCGTGCCGCGAAGGTG
ACATTGCTCAGGTGCAGCGCCGCCTGCTGCAGGGCGCGGACCCCGACGCC
GTGGACGCGCAGGGCAACACAGGCGCGCACGCCGCGGCGGCGGAAGCGCG
CCTCGACGTGCTGGCGGCGCTCGCGGCCGCGGGCGCGGCGGCGGAGGCGC
GCAATGCGCGCATGGAGACGCCGCTGCTGCACGCCGTGCGCCGCGGCAGC
GCGAGCGGCGCAGCGGCGCTGCTGCTGCCGCCGTGGCGCGCGGCGCTGGG
CGCGCTGGACAGGGGGCGCAGGGGGGTGGTGGCGCTTGCGGTGATGGCGG
GGAGCATGGAGTGCCTGGCGCTGGCACTGGACAATGGCGCGAGCGTTCAC
AAGAAGGACGCGCAATGGGGCTGGACACCGCTGCATCACGCGGCGCACAG
CGGCGCCCTGCAGGCCATCTCGCTGCTGCTGTCGCGGCGCGCAAGCATCT
ACGCGCTGAGCGATGAGGGGCAAACGCCACTTCAGGTGGCAGAGGGCGCC
AAGCAGGAAGCGGCGGCACGGCTGCTGCGCGCGCGCGCCGCCGACGAGCC
CGCGCACGTCGTCATGGTGCTGGACAACAGCACGGAGATCTGGCTCGGCA
GCTGCGCGGCGGCGCGCGCCGGCTGGGCGCAGGACCGCGGCTTCACGGCA
GTGCTCAGCGTAAACGACGGCGGCGAGGAGTGGTCGCAGCGCGCCGTCGC
GTGGCTCGCGGAGCCCGACTGTAGCACGGCTCATCTGCTCATCGAGGCGC
CGCTGGGGGGGGCGGGGGGCGCAAAGGGGGGGCGCGCGTGGGGCGGCGTG
TGCGGCAGCGCTCAGGGCTTGGCGAGCGCTGTGGCGTTCATCGACGCGGC
GCGGCGGCGGCGCGCGCGCGTGCTGCTGCACTGCTCCGACGGGCGGTGCG
CGTGCGCGGGCGTGTGGGCCGCGTACAGCCCTGCGTGCTCTGCAACGTCG
GCGGTGGCCAAGGCGGACTCTCCTGTTGCACTGCTGCTGCTGTCGCTGCT
GCTGCTGCCGCCACTGCTTGCGCTGCCGCCACCACCACTGCTGCCACCGC
TGCCGCCACCGCCACCGCTGCCGCCGTCGCTGCCGCTGCCGCTGCCGCCG
CCGCCGCCGCTGCCGGCACCGCTGCCGCCGTCGCTGCCGCTGCTTCCTGC
GCTGCCGCCGCCGCCACCGCTGCCGCCGTCGCTGCCGCTGCCGCCGCCGC
CGCCGCTGCCGGCACCGCTGCCGCCGTCGCTGCCGCCGCTGCCGCCGCTG
CTGCGCGACGGCATGCACGTGCGCGACACGCTCGCCAAGGTGCGCGCCGC
GCGGCCGTGCACGGCGGTGACGCGCGCCGTCGCCGCCGCGCTGCAGGCGC
TGCAGGACGACTTTGTGGCGGAGCGCAACCGCCGCCTCGAGGCGCGCGTG
CGTAACGCCCCGATTCTCTCCATCGGCTTCTGA