mRNA_5715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349421
Unique NamemRNA_5715
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835Z239_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z239_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.430e-26
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ 420
            MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ
Sbjct:    1 MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQXXXXXXXXXXXXXXXXXSFQTSAKXXXXXXXXXXXXXXXXXDETTCAAAADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEWDSGGLHRAQ 140          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A836CDK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK8_9STRA)

HSP 1 Score: 589 bits (1518), Expect = 7.140e-213
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 1
Query:    1 MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL 861
            MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL
Sbjct:    1 MTVRPFTSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGEKPKPRIVKPTSGWLGEVEVGTL 287          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A836CQS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQS9_9STRA)

HSP 1 Score: 464 bits (1195), Expect = 1.250e-155
Identity = 236/276 (85.51%), Postives = 243/276 (88.04%), Query Frame = 1
Query:    1 MTVRPFTS-----------YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT            YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELF  LAARMAGRGPWWYAEFMQPWAKAAN TTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV+SHD HQGPHGLT+LPRRGYQ+G +        +GE
Sbjct:  461 MTVRPFTRAVHDLAELVTIYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSELFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFSGLAARMAGRGPWWYAEFMQPWAKAANSTTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVSSHDLHQGPHGLTKLPRRGYQVGYINEELGDVLEGE 733          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A836CNV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV6_9STRA)

HSP 1 Score: 471 bits (1212), Expect = 9.680e-152
Identity = 238/276 (86.23%), Postives = 247/276 (89.49%), Query Frame = 1
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT           +YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA +PRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV+SHDSHQGPHGLT+LPRRGYQ+G +        +GE
Sbjct:  973 MTVRPFTRAVHDLAELVTTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPVPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVSSHDSHQGPHGLTKLPRRGYQVGYINEELGDVLEGE 1245          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835ZFR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR8_9STRA)

HSP 1 Score: 452 bits (1164), Expect = 5.290e-151
Identity = 228/259 (88.03%), Postives = 237/259 (91.51%), Query Frame = 1
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            T+YAGNDLHGELQARLNQLGFR AELDDD  VQEGAD LKILDICETVRH+PDG+SDASKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRIL+PWLVDRTFMTDGHQL+LLLVTSH SHQGPHGLTELPRRGYQ+G +        +GE
Sbjct:  217 TTYAGNDLHGELQARLNQLGFRYAELDDDRYVQEGADYLKILDICETVRHLPDGNSDASKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILSPWLVDRTFMTDGHQLELLLVTSHVSHQGPHGLTELPRRGYQVGFINEELGDVLEGE 472          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835YXL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL0_9STRA)

HSP 1 Score: 448 bits (1153), Expect = 8.700e-150
Identity = 228/261 (87.36%), Postives = 235/261 (90.04%), Query Frame = 1
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQ 750
            MTVRPFT           +YAGNDLHG LQARLNQLGFRGAELDDDGDVQEGAD+LKILDICETVRH+PDGDSD+SKRRLLAQLQQLYVETDRTDYQDLMS LFE   QFPDDA ARRE RDAVWGLL VPPKLTA LPRFKPQPAFIRI+R GMGELF  LAARMAGRGPWW A+FMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRT MTDGHQLKLL VTSHDSHQGPHGLT+LPRRGYQ
Sbjct:  174 MTVRPFTRAVHDLAELVTTYAGNDLHGGLQARLNQLGFRGAELDDDGDVQEGADHLKILDICETVRHLPDGDSDSSKRRLLAQLQQLYVETDRTDYQDLMSGLFE---QFPDDATARREHRDAVWGLLPVPPKLTAPLPRFKPQPAFIRINRTGMGELFSGLAARMAGRGPWWCAKFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTVMTDGHQLKLLPVTSHDSHQGPHGLTKLPRRGYQ 431          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835YWJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ2_9STRA)

HSP 1 Score: 458 bits (1179), Expect = 3.510e-149
Identity = 234/276 (84.78%), Postives = 242/276 (87.68%), Query Frame = 1
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRP T           +YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRR LAQLQQLYVETDR DYQDLMS LFE   QFPDDAAARRE+RDAVWGLL V PKLTA LPRFKPQPAFIRIDR G+GELFP LAA MAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRG+Q+G +        +GE
Sbjct:  230 MTVRPLTRAVHDLAELVTTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRHLAQLQQLYVETDRADYQDLMSGLFE---QFPDDAAARRENRDAVWGLLPVLPKLTAPLPRFKPQPAFIRIDRTGLGELFPGLAAWMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGHQVGYINEELGDVLEGE 502          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835YJ56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ56_9STRA)

HSP 1 Score: 466 bits (1200), Expect = 4.540e-148
Identity = 236/276 (85.51%), Postives = 244/276 (88.41%), Query Frame = 1
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGELTLTCSRSSDGE 795
            MTVRPFT           +YAGNDLHGE QARLNQLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASK RLLAQLQQLYVETDRTDYQ+LMS LFE   QFPDDAAARRE+RDAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERA QPGYR+LAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQ+G +        +GE
Sbjct:  507 MTVRPFTRAVHDLAELVTTYAGNDLHGEPQARLNQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKHRLLAQLQQLYVETDRTDYQELMSGLFE---QFPDDAAARRENRDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERASQPGYRVLAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQVGYINEELGDVLEGE 779          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835ZEL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL6_9STRA)

HSP 1 Score: 414 bits (1064), Expect = 5.710e-136
Identity = 217/280 (77.50%), Postives = 231/280 (82.50%), Query Frame = 1
Query:    1 MTVRPFT-----------SYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV----------TSHDSHQGPHGLTELPRRGYQLGELTLTCS 777
            MTVRPFT           +YAGNDLHGELQARL+QLGFRGAELDDDGDVQEGAD LKILDICETVRH+PDGDSDASKRRLLAQ QQLYVETDRTDYQ+LMS LFE   QFP+DAAARRE+ DAVWGLL VPPKLTA LPRFKPQPAFIRIDR GMGELFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRIL PWLVD+TFMTDGHQLKLLLV             +  +GP+G+  L R   ++G    T +
Sbjct:  155 MTVRPFTRAVHDLAELVTTYAGNDLHGELQARLDQLGFRGAELDDDGDVQEGADYLKILDICETVRHLPDGDSDASKRRLLAQPQQLYVETDRTDYQELMSGLFE---QFPNDAAARRENTDAVWGLLPVPPKLTAPLPRFKPQPAFIRIDRTGMGELFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILPPWLVDKTFMTDGHQLKLLLVGYINEELGDVLEGEVAEGPNGVFRLQRVHREIGAEPATVA 431          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A836CAT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT6_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 3.710e-134
Identity = 203/250 (81.20%), Postives = 214/250 (85.60%), Query Frame = 1
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFK-PQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANI-TTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVTSHDSHQGPHGLTELPRRGYQLGEL 762
            TSYAGN+LHGELQARLNQLGFRGAELDDDGDVQEGAD LKILDIC TVRH+PDGD+DASKRR LAQLQQLYVET+RTDY +LMS LFE   Q P DAAARRE+RD+VWG L VPPKLTA LP  + P     R     MG L P LAARMAGRGPWWYAEFMQPWAKAANI TTMRQRTNHYARSER VMRAIERAGQP YRILAPWLVDRTFMTD HQLKLL+VTSHDSHQGPHGLT LPR GYQ+G +
Sbjct:   24 TSYAGNELHGELQARLNQLGFRGAELDDDGDVQEGADYLKILDICVTVRHLPDGDNDASKRRFLAQLQQLYVETERTDYLELMSGLFE---QSPGDAAARRENRDSVWGQLPVPPKLTAPLPPLQAPAGVHPRPPGTAMGRLVPGLAARMAGRGPWWYAEFMQPWAKAANIITTMRQRTNHYARSERSVMRAIERAGQPRYRILAPWLVDRTFMTDSHQLKLLMVTSHDSHQGPHGLTNLPRTGYQVGYI 270          
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Match: A0A835Z8U0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U0_9STRA)

HSP 1 Score: 405 bits (1040), Expect = 2.240e-132
Identity = 208/263 (79.09%), Postives = 222/263 (84.41%), Query Frame = 1
Query:   19 TSYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGADNLKILDICETVRHVPDGDSDASKRRLLAQLQQLYVETDRTDYQDLMSRLFEQFPQFPDDAAARRESRDAVWGLLLVPPKLTATLPRFKPQPAFIRIDRFGMGELFPDLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVMRAIERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV----------TSHDSHQGPHGLTELPRRGYQLGELTLTCS 777
            T+YAGNDLHGELQARLNQLGFRGAELDDDGDVQEGA+ L ILDICETVRH+PDGDSDASKRRLLAQLQQLYVETD TDYQDLMS LF    Q+PDD AARRE+RDAVWGLL VPPKLT  LPRFKPQPAFIRIDR GMG+LFP LAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGV+RA ERAGQPGYRILAPWLVDRTFMTDGHQLKLLLV             +  +GP+G+  L R   ++G    T +
Sbjct:  282 TTYAGNDLHGELQARLNQLGFRGAELDDDGDVQEGANCLMILDICETVRHLPDGDSDASKRRLLAQLQQLYVETDCTDYQDLMSELF---GQYPDDTAARRENRDAVWGLLPVPPKLTVPLPRFKPQPAFIRIDRTGMGQLFPGLAARMAGRGPWWYAEFMQPWAKAANITTMRQRTNHYARSERGVVRANERAGQPGYRILAPWLVDRTFMTDGHQLKLLLVGYINEELGDVLEGEVAEGPNGVLRLQRVHREIGAEPATVA 541          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349421 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z239_9STRA3.430e-26100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|349421 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDK8_9STRA7.140e-213100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CQS9_9STRA1.250e-15585.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CNV6_9STRA9.680e-15286.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFR8_9STRA5.290e-15188.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXL0_9STRA8.700e-15087.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWJ2_9STRA3.510e-14984.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJ56_9STRA4.540e-14885.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEL6_9STRA5.710e-13677.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAT6_9STRA3.710e-13481.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8U0_9STRA2.240e-13279.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:854388..857055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349421|estExt_Genemark1.C_Ctg_420110
Hectar predicted targeting categoryother localisation
TranscriptId349743
TrackFilteredModels1
ProteinId349421
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349421gene_5715Tribonema minus UTEX_B_3156 geneContig_42 854388..857055 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5715_1exon_5715_1Tribonema minus UTEX_B_3156 exonContig_42 854388..854550 +
exon_5715_2exon_5715_2Tribonema minus UTEX_B_3156 exonContig_42 855051..855282 +
exon_5715_3exon_5715_3Tribonema minus UTEX_B_3156 exonContig_42 856745..857055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5715CDS_5715Tribonema minus UTEX_B_3156 CDSContig_42 854388..854550 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5715UTR3_5715Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 856773..857055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349421Trimin1|349421|estExt_Genemark1.C_Ctg_420110Tribonema minus UTEX_B_3156 polypeptideContig_42 854388..856772 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Trimin1|349421|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=706bp|location=Sequence derived from alignment at Contig_42:854388..857055+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGCTGCCGGCGATGGGGATCTGGACGCGGTGCAGTGGCTGCA
CCAAAACCACTGTCCCTGGAGCGAGGGTACAAGCAGCAAAGCGGCGCAGA
ATGGACACCTCGAGGGGCTGCAGTGGGCACGCAAACGGGGGTGCCCGTGG
AGCTTTCAGACTTCCGCCAAGAACGGGTACCTCGAGGGGGTGCAGTGGCT
TCATGCCAGCGGCTGTCCTTGGGACGAGACAACATGTGCCGCTGCAGCAG
ATGGCGGGTACCTGGAGGTGCTGCAGTGGCTTCGTGCCAACGGCTGCCCA
TGGGATAAGGATACATGCGTATCGGCCATCTATAATGAGTGCGAGGAGAT
AGTGGCGTGGGCGCGTGCCAACGGGTGCCCCTGCGATGAGTGGGACAGCG
GCGGCCTCCACCGGGCGCAGTGAAACCCACCGTACCAGACGCGCCCCTCT
TGGGACAGTCTGATGCACCCCAGAGCGGCACACCGACAACCCTCTGCTCT
GCCCCCCTCTGCAGAGGTAGTAGTAGTTCTGCGGCCCAGGCCTGTCTGTG
CCGCCCTTGTCATAAGGGAGGTCTGATCTCTGAACGAACACGCAGGTCAA
TCTGTGTACCCACTGGCACGCCGCAGACCAGGCTGTGCGGAAAATTGCAG
GCCCGGTACAGCGCTGCACACACCTTCAGCCCCCCCCCCCCCCTTCCATC
CCCCCC
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protein sequence of jgi.p|Trimin1|349421

>Trimin1|349421|estExt_Genemark1.C_Ctg_420110 ID=Trimin1|349421|estExt_Genemark1.C_Ctg_420110|Name=jgi.p|Trimin1|349421|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MEAAAGDGDLDAVQWLHQNHCPWSEGTSSKAAQNGHLEGLQWARKRGCPW
SFQTSAKNGYLEGVQWLHASGCPWDETTCAAAADGGYLEVLQWLRANGCP
WDKDTCVSAIYNECEEIVAWARANGCPCDEWDSGGLHRAQ*
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mRNA from alignment at Contig_42:854388..857055+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Trimin1|349421|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2668bp|location=Sequence derived from alignment at Contig_42:854388..857055+ (Tribonema minus UTEX_B_3156 )
ATGGAGGCCGCTGCCGGCGATGGGGATCTGGACGCGGTGCAGTGGCTGCA CCAAAACCACTGTCCCTGGAGCGAGGGTACAAGCAGCAAAGCGGCGCAGA ATGGACACCTCGAGGGGCTGCAGTGGGCACGCAAACGGGGGTGCCCGTGG AGCTTTCAGACTTGTCAGTGTGCCGCTGAGGGCGGGCACCTAGACGTGCT GCAGTGGCCACATGCCTCCAGCTGCCCTTGGGACCAGTCTACTTGCGTGG CAGCTGCAGCAGAAGGCGACCTCGAAATGCTGCAGTGGCTTCATGCCAGC GGGTGTCCGTGGGATGTACAAACCAAACCACCCATGCGGCCGCTGACAAC GGGTACCTCGAGGTGCTGCAGTGGCTACATGCCAGCGGCTGTCCAAGGGA CGAGGAAACCTGCAGCATTGCTGCCGGGGAGGGGCTGCTGGACGTGCTGC AGTGGCTACATGCCAGCGGGTGCCCGTGGGGTTTAGGGACCACTAATGCT GCCGCTGAGAACGGGTGCCTCGAGGTGCTGCAGTGGCTACATGCCAGCGG CTGTCCATGGGACGACACAACATGTGCCGCTGCAGCAGATGGCGGGTACC TGGACGTGCTGCAGTGGCTACATGCCAGTGGGTGCCCGTGCGGTGTAGGA ACCACTAATGCAGCCGCCAAGAACGGGTACCTCGAGGGGGTGCAGTGGCT TCATGCCAGCGGCTGTCCTTGGGACGAGACAACATGTGCCGCTGCAGCAG ATGGCGGGTACCTGGAGGTGCTGCAGTGGCTTCGTGCCAACGGCTGCCCA TGGGATAAGGATACATGCGTATCGGCCATCTATAATGAGTGCGAGGAGAT AGTGGCGTGGGCGCGTGCCAACGGGTGCCCCTGCGATGAGTGGGAGTGCG AAGAATTAGCCCGAGAGGTGGCATGTGAGAGGCCTGCTTACTCCGACCAT AGTAGTGATATCGAGTCAGAGAAGCTGTGGTCGGTACATTCCTGGGACAC TTCCAGTGAGGAGTCGTGGAACTTTTAGGAGGACTCTTGCGGGCTGGATT ATCAAGGGGTGGAGTCGAGAGACACACCAGTCTCACCGTAGTGCACAAGC GTGCTTGCAAGATCAGCGTGGGGTAAGTGGTACGCCGGACTATGTTGGCA TGCATGTGCATACGTGCATCTGCATCTCGTTTCACACGGCCTAGGCTGTG CAGGAGACCTGCACGTGCACTGCATATACGTATGTGCATACATTTGAGAG AGTAGGGCACTGAGCAACAGGCACTGATCCTTTGCCCAGGCTATCATGTA CGTCGTGCTGCACACCCTCAAGCATGTGCAGAGTATGTAGGCGCAGGGCG CAAGTGTATCGTCACAAGATGGGTCAGCTGGCAGCATTCATAAGCATGCT GACTGTACAGTGGGCGTAGAAGGGCGGGTGGCTTTTGGCCGCGTTGCATG CACACCCCACGTGTAATGCGTGAAATGCGGCCTGCCTTCAGGAATGCAAT GCAACCAAATTTGTGACACTCCAGTCATGGCCATCTGCTTCTTGCCACAA TGTCATTCGCTTGGTGCGACCAATGTGTTTGCGACTGAGTTGCTGTTGCC AATGCTGCTGTTGATCATGGTCGCACGCCTTGCTGACACACTCGTCATGT CCATATCAGGAAACCTTTGGGTCACTGGTAAAATTGCAACTTGACGTGTC ACATGCATGGCGTGAAATCAGAGCTTAAGACGAAGGTGCTTTTTCATTGA CATACAAATGGCAGCTTCTGGTGACGGGCTCAAGCTGACACACAGCAGCT TTGTTGTTGGGCTCGCCGAAGCAGAAAACACTGGCGCACACAAGGCACAG ACACCGCATGCAATGCTGATGCATGGTGTGCGTATGCACGCATGCGAGCA CCGGATATTCACACTGCATTGTCATATATGTGCACGCAGTGGTTTGTAAG CACTTGCCCAGCACAACAACTCTCTCAAGTAGGTGCACACAAAGAGCTGA TAACAGGTGGGGTCTTGCGCAGAAACAGCCTTGCATGCGAAGGTCTGAAA GTGGTGCACTTCATAAGCTATTTGCTGGCCGTTTACGCCCTTATGAGCCT GAACAAATCACAGTTCCATGAAATGACTTTCAACGCCAGCAGCCAATGGT GCGCATTGTGGCATGCAGCTGAAAAGCGCCGGCAGTACATGTTACAAAGA AGCGCAGGTGACAGCACACCCGCCCTCAGCAGAATCCTATGCTCCTGCCC TCCACGAGGCACAGCAGCTGAACAGCAGAGCAAGGGCAGAGGCGCGCGAG CTGCGCAACAGATCATCCATTTATGCGCTGCGCACGTGCCGCCCGCCGCC GCCGCAGCAGCGGCGGCCTCCACCGGGCGCAGTGAAACCCACCGTACCAG ACGCGCCCCTCTTGGGACAGTCTGATGCACCCCAGAGCGGCACACCGACA ACCCTCTGCTCTGCCCCCCTCTGCAGAGGTAGTAGTAGTTCTGCGGCCCA GGCCTGTCTGTGCCGCCCTTGTCATAAGGGAGGTCTGATCTCTGAACGAA CACGCAGGTCAATCTGTGTACCCACTGGCACGCCGCAGACCAGGCTGTGC GGAAAATTGCAGGCCCGGTACAGCGCTGCACACACCTTCAGCCCCCCCCC CCCCCTTCCATCCCCCCC
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Coding sequence (CDS) from alignment at Contig_42:854388..857055+

>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Trimin1|349421|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_42:854388..857055+ (Tribonema minus UTEX_B_3156 )
ATGGAGGCCGCTGCCGGCGATGGGGATCTGGACGCGGTGCAGTGGCTGCA
CCAAAACCACTGTCCCTGGAGCGAGGGTACAAGCAGCAAAGCGGCGCAGA
ATGGACACCTCGAGGGGCTGCAGTGGGCACGCAAACGGGGGTGCCCGTGG
AGCTTTCAGACTTCCGCCAAGAACGGGTACCTCGAGGGGGTGCAGTGGCT
TCATGCCAGCGGCTGTCCTTGGGACGAGACAACATGTGCCGCTGCAGCAG
ATGGCGGGTACCTGGAGGTGCTGCAGTGGCTTCGTGCCAACGGCTGCCCA
TGGGATAAGGATACATGCGTATCGGCCATCTATAATGAGTGCGAGGAGAT
AGTGGCGTGGGCGCGTGCCAACGGGTGCCCCTGCGATGAGTGGGACAGCG
GCGGCCTCCACCGGGCGCAGTGA
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