mRNA_5666 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166292
Unique NamemRNA_5666
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A835Z0R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R4_9STRA)

HSP 1 Score: 472 bits (1215), Expect = 3.440e-168
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1
Query:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIEDRA 726
            MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIEDRA
Sbjct:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIEDRA 242          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7S4D6I6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6I6_HETAK)

HSP 1 Score: 205 bits (522), Expect = 4.620e-61
Identity = 122/295 (41.36%), Postives = 171/295 (57.97%), Query Frame = 1
Query:   13 TGIRG--DIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAF-SVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFP------------------------------------------------------AFYSSDAMLRR--IPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIED 720
            T IRG  D+I  LGL+G+ DID+IA ILF ++VGS LSS ++++ LPGP+IVR++ +W++AF PYG+L LG++ PA+LQ+ L++ F +V+P YRERL  HEAGHFLVGYL GMP++SY AD+  NAV F+P                                                      A     A+ RR  +   +L RL   SL G++AE ++ G  EGGYADL+QL   L   E+RL+D++QQ+ VR+ AV A + L+     L  L  A +R ASV +C+R IE+
Sbjct:   75 TRIRGEKDLIQTLGLDGKSDIDKIASILFAVIVGSILSSLTVLQNLPGPEIVRWSVTWLLAFAPYGYLALGLSFPAVLQRLLIQIFRAVDPAYRERLLYHEAGHFLVGYLVGMPVQSYSADAPINAVQFYPLAGLPQEIKQRSRNTEIPPESVKRNAKEEEEMSIEKLRQLWTKINQDPNGPTRRAVEEGAAIGRRGALSLDQLQRLTVTSLAGVMAEVVQLGEGEGGYADLVQLQNFLYFCEQRLTDQQQQEYVRWGAVQAFTLLEVRRAELAALVEAFRRGASVPECLRVIEE 369          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A5J4YTJ7_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTJ7_PORPP)

HSP 1 Score: 159 bits (403), Expect = 1.450e-42
Identity = 92/229 (40.17%), Postives = 136/229 (59.39%), Query Frame = 1
Query:   43 LGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAF-SVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSS--DAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIED 720
            L   G  D   I    F ++  S  S+ ++ ++LPGPD+VR+ A++ +  +PY FL  GI+ P LLQ +L+ A  + + E+R RLA HEAGHFLVGYL G+P+  Y+AD+V NAV F+  F  +  D+   R    ++  LA +SL G+V+E L F  + GGYAD MQL  +       L  R  Q +VR+  V A++ L+ +  AL++LTA +     + +CI AIED
Sbjct:  238 LDFKGEGDKSAITVSFFAVLALSISSALAIEQYLPGPDVVRYAAAFSVGGLPYVFLLFGISVPDLLQFALILARRTFSKEFRTRLAAHEAGHFLVGYLLGVPVREYKADAVMNAVQFYFDFEEAQQDSKPLRFTHEQVDELAIISLAGVVSEILLFKQASGGYADFMQLQRVANRSVPPLEPRAVQAKVRWGCVRAYTLLQQNAAALEQLTAKMAVGRPLDECIAAIED 466          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A8J5XI93_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI93_DIALT)

HSP 1 Score: 154 bits (390), Expect = 3.550e-41
Identity = 99/250 (39.60%), Postives = 139/250 (55.60%), Query Frame = 1
Query:   40 KLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFS-VNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSSDAM-----LRRIP-------EPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNAL-LRC----------GEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIE 717
             LGL+G  D   I+ +   LV G   S   +++ LPGPDIVR+  S ++   PY FL+LG+  P L+Q+++      ++P YR R+ RHEAGHFL GYL G+P+  Y A++  +AV   P   +   +      R  P       E  L RLA VSL GIVAECL FG +EGG ADL QL+A  LR             +R    ++++RVR+AAV A++ L  +G A +RL  A+    +V DC  AI+
Sbjct:   53 NLGLDGESDAKAISAVTSALVFGGATSGALVVQELPGPDIVRWCVSALLICSPYAFLSLGLTTPGLVQRAVSAGRRLISPAYRARMLRHEAGHFLAGYLVGLPVTRYSANAALSAVECGPPVRADGGVPDGTRARSQPGAADVSAEDALNRLAVVSLAGIVAECLCFGQAEGGLADLSQLHAAQLRARALGSTDDDDAVQRERGEDERNRVRWAAVQAYALLHGNGAAFERLVRAMGADLAVRDCEAAID 302          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7S0XV52_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XV52_HEMAN)

HSP 1 Score: 151 bits (381), Expect = 5.130e-41
Identity = 95/249 (38.15%), Postives = 141/249 (56.63%), Query Frame = 1
Query:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSL--------IEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFS-VNPEYRERLARHEAGHFLVGYLCGMPIESYQAD-SVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIE 717
            M+    I+ D ID     G  D++ ++   +  +  S L ST          + FL G D  RF  +  I   P+ FL +G++ P LLQ  L++A   V+ E+R+RL RHEAGHFLVGY  G+PI  Y+AD ++ NA  FF   + +    RR+   ++  L AVS+ G+VAE + +    GGYADL QL   L      L+D+EQQ+RVR+ +V+A++ L+THG+A + L   + R  SV  C++ IE
Sbjct:   48 MLTRGVIKEDTIDT---RGDDDMEVLSTSFYATLATSMLLSTWASIAIPNMDLPFLRGSD-TRFFVTIAIGSTPFAFLGMGLSLPGLLQAILIQARRLVSGEFRDRLIRHEAGHFLVGYCLGVPIAEYKADDAILNACQFFEDSFDTGPA-RRLSHDQVDTLCAVSMAGVVAESITYEKGLGGYADLSQLQGFLSRATPILNDKEQQERVRWGSVLAYTVLRTHGEAFEALVECMGRGESVESCVKVIE 291          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7S0V097_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V097_9CRYP)

HSP 1 Score: 150 bits (379), Expect = 8.530e-41
Identity = 99/240 (41.25%), Postives = 137/240 (57.08%), Query Frame = 1
Query:    1 MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSL--------IEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAF-SVNPEYRERLARHEAGHFLVGYLCGMPIESYQA-DSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSAS 690
            M+    I+ D ID     G  D++ ++   +  +  S   ST          I FL G D VRF  +  I   P+ FL LG++ P LLQ  L++A  +V+ E+R+RL RHEAGHFLVGY  G+PI  Y A D++ NA  FF   + + A  RR+   ++  L AVS+ G+VAE L +    GGYADL QL   L      L DREQQD+VR+ +V+A++ L+THG AL+ L  A+ R AS
Sbjct:   52 MLTRGVIKEDTIDT---RGDDDMEVLSTSFYATLATSMALSTWASIAIPNMDIPFLRGSD-VRFFVTIAIGSSPFAFLGLGLSLPGLLQAILIQARRAVSGEFRDRLVRHEAGHFLVGYCLGVPIAEYAAGDAILNACQFFEDAFDTPA--RRLTHNQVDTLCAVSMAGVVAESLAYDKGLGGYADLSQLQGFLSRATPILDDREQQDKVRWGSVLAYTVLRTHGGALEALVEAMGRGAS 285          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: B7G3B9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3B9_PHATC)

HSP 1 Score: 143 bits (361), Expect = 4.000e-36
Identity = 99/319 (31.03%), Postives = 150/319 (47.02%), Query Frame = 1
Query:   31 IIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAF-SVNPEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFP--------------------------------------AF--------------------------YSSDAML--------------RRIPEPELLRLAAVSLGGIVAECLRF----------GTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIED 720
            I+D + L+G RD DR +  L  L+V S +S+    + LPGP+I+RF   W+  F P+ F+  GIA P  LQ  LV     + P YR+R+ +HEAGHFL+G+L G+P+  YQA++V NAV F+P                                      AF                          Y+++  L              R   E  L +L+A+S+ G+ +E L F          G +EGG ADL QL  + R  E  +S+R++++R+RFA     S L+ H  ALD L+  ++R  ++ +C+ AIE+
Sbjct:  132 IMDVIELSGNRDADRASLSLLCLMVASTISAIIANQHLPGPEILRFMVVWLFCFSPFIFVGYGIATPEKLQAFLVSVQRELFPAYRQRMLQHEAGHFLMGHLLGLPVAGYQANAVKNAVNFYPLADTDRSFDLASQLGFDKSLSARRVEQNSEALSADQLSAFDAPFFSETGRGAWLVEERSVFRNAQNYTNNPFLKLASRNEPSNSWPFRGFDEATLDQLSAISVAGVCSEILAFVCIRLFLWAIGNAEGGVADLNQLRQIYRSAEPSISERDEENRIRFALGYTMSQLRRHLGALDALSKIMERDGTIAECVAAIEN 450          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7S3AC95_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC95_9RHOD)

HSP 1 Score: 135 bits (339), Expect = 2.320e-34
Identity = 83/230 (36.09%), Postives = 130/230 (56.52%), Query Frame = 1
Query:   37 DKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVN--PEYRERLARHEAGHFLVGYLCGMPIESYQADSVTNAVAFFPA-FYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIE 717
            D LGL  +  ID +    F ++ GS L +  L + +   D+  F+ S++I  +   FL +G   P LL  +L+   S N  P+++ERL  HEAGHFL GYLCG+P++ Y  + +T  V  F   F + D    R+   ++  L+ V+L G  AE +++G +EGG ADL  L  LL   +  +  +EQQ++ R+ A+MA++ LK +    + L  A++   SV DCI+AIE
Sbjct:  109 DSLGLTQKNTID-LKLASFAVIGGSSLLAV-LCQAVFSGDLAYFS-SYLIGGLSIAFLAIGSTAPGLLT-ALITTISANLRPDFKERLLLHEAGHFLAGYLCGVPVKKYDVNPITTGVTIFGGKFLTEDVAQGRVSRDDVNALSVVALAGPAAEVIKYGQAEGGMADLNLLQNLLVRTKPPMLSKEQQEQTRWGALMAYTVLKKYSAEYEALVEAMKAKKSVADCIKAIE 334          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7S3V807_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V807_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.830e-33
Identity = 77/194 (39.69%), Postives = 116/194 (59.79%), Query Frame = 1
Query:  151 PDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYR----ERLARHEAGHFLVGYLCGMPIESYQA-DSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIE 717
            P+    T  ++ A IP  FL +G + P ++  + +K F  N + +    +R+ RHEAGHFL GYLCG+PI+SYQA DS    V F+P    + A  R + E E+  ++ V++ G VAE L FG ++GG +DL+QLN L    ++ +  + QQD  R+ A  A++ + ++ D  DRL AA +   SVT+CI AIE
Sbjct:  218 PENTGATFCYIFALIPILFLAVGSSAPGIIAGA-IKGFKENKDDKAAQEDRICRHEAGHFLCGYLCGLPIKSYQANDSGIPCVEFYPTTDGNFAG-RELEEQEICAMSVVAMSGSVAEVLEFGEAKGGSSDLIQLNGLFSRTKDFMGAQAQQDMTRWGAYTAYNIISSNEDKFDRLVAAFKSKKSVTECIAAIE 409          
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Match: A0A7R9VLF5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLF5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.430e-32
Identity = 73/235 (31.06%), Postives = 130/235 (55.32%), Query Frame = 1
Query:   37 DKLGLNGRRDI--DRIAFILFGLVVGSFLSSTSLIEFLPGPDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSV---NPEYRERLARHEAGHFLVGYLCGMPIESYQ-ADSVTNAVAFFPAFYSSDAMLRRIPEPELLRLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRVRFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIEDR 723
            + LG++G  D+  D        + +GS + + + +  LP  + +  T  ++IA +P GF+ +G   P+++  ++           +  +R+ RHEAGHFL GYLCG+P+++Y   D+    V F P+    +A  R     E+  L+ V++ G VAE L FG ++GG  DL++LN L+R  +E +  +++QD  R+ A+ A++ ++ + D  + L  A +   SV +C+ AIE R
Sbjct:   22 ESLGVSGEMDVTLDDFKDATIAVTLGSTILAIAALAVLP--ENIGATVCYLIALVPVGFIAIGSTAPSIIAGAIASFQGTADDQTQREDRICRHEAGHFLCGYLCGLPVKAYSIGDTGFPCVEFHPSA-EGEASGREFTSEEIAALSVVAMSGSVAEVLSFGQAKGGENDLLELNGLMRRSKEFIGAQKEQDLTRWGALAAYNLIQANMDKYEVLVEAFKEKKSVAECVAAIEAR 253          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166292 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0R4_9STRA3.440e-168100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6I6_HETAK4.620e-6141.36Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A5J4YTJ7_PORPP1.450e-4240.17Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A8J5XI93_DIALT3.550e-4139.60Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0XV52_HEMAN5.130e-4138.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0V097_9CRYP8.530e-4141.25Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
B7G3B9_PHATC4.000e-3631.03Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3AC95_9RHOD2.320e-3436.09Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S3V807_9STRA9.830e-3339.69Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7R9VLF5_9STRA4.430e-3231.06Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:426673..430210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166292|e_gw1.42.222.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs2D23T@1|root,2SKBP@2759|Eukaryota,2XCVB@2836|Bacillariophyta
Evalue6.55e-37
Seed ortholog2850.Phatr47423
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001660.1
TranscriptId166614
TrackFilteredModels1
ProteinId166292
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166292gene_5666Tribonema minus UTEX_B_3156 geneContig_42 426673..430210 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5666_1exon_5666_1Tribonema minus UTEX_B_3156 exonContig_42 426673..426971 +
exon_5666_2exon_5666_2Tribonema minus UTEX_B_3156 exonContig_42 428374..428665 +
exon_5666_3exon_5666_3Tribonema minus UTEX_B_3156 exonContig_42 430073..430210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5666CDS_5666Tribonema minus UTEX_B_3156 CDSContig_42 426673..426971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166292Trimin1|166292|e_gw1.42.222.1Tribonema minus UTEX_B_3156 polypeptideContig_42 426673..430210 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5666 ID=mRNA_5666|Name=jgi.p|Trimin1|166292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=729bp|location=Sequence derived from alignment at Contig_42:426673..430210+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTGCGACGGGCATTCGCGGCGACATCATCGACAAGCTAGGCCT
CAATGGCCGGCGAGACATCGACAGGATCGCATTCATCTTGTTTGGCTTGG
TGGTGGGATCATTTCTGAGCTCGACCAGCCTCATTGAGTTCCTGCCAGGG
CCTGACATTGTCAGGTTCACCGCATCATGGGTGATTGCTTTCATACCATA
TGGATTTCTCACGCTGGGCATCGCAAAGCCGGCGCTGCTGCAGAAGTCGC
TGGTCAAGGCGTTTTCTGTCAACCCGGAGTATCGGGAGAGGCTTGCGAGA
CACGAAGCGGGGCACTTTCTGGTGGGTTACCTCTGCGGCATGCCCATAGA
GAGCTACCAGGCGGACTCCGTCACCAATGCGGTGGCGTTCTTTCCCGCGT
TCTACAGCTCTGACGCGATGCTGCGGCGCATACCGGAGCCGGAGCTGCTG
CGGCTAGCCGCCGTATCGCTGGGGGGGATTGTTGCGGAGTGCTTGCGGTT
TGGGACGAGCGAGGGGGGGTATGCGGATCTGATGCAGCTTAACGCGCTGC
TGCGGTGCGGCGAGGAGAGGCTGTCGGACAGGGAGCAGCAGGATCGCGTG
CGCTTTGCGGCTGTCATGGCGCACTCATACCTCAAAACGCATGGCGATGC
GTTGGATCGATTGACAGCGGCGGTGCAGCGGAGCGCCAGCGTCACGGACT
GCATACGCGCCATTGAGGATCGTGCATAG
back to top

protein sequence of jgi.p|Trimin1|166292

>Trimin1|166292|e_gw1.42.222.1 ID=Trimin1|166292|e_gw1.42.222.1|Name=jgi.p|Trimin1|166292|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=243bp
MMAATGIRGDIIDKLGLNGRRDIDRIAFILFGLVVGSFLSSTSLIEFLPG
PDIVRFTASWVIAFIPYGFLTLGIAKPALLQKSLVKAFSVNPEYRERLAR
HEAGHFLVGYLCGMPIESYQADSVTNAVAFFPAFYSSDAMLRRIPEPELL
RLAAVSLGGIVAECLRFGTSEGGYADLMQLNALLRCGEERLSDREQQDRV
RFAAVMAHSYLKTHGDALDRLTAAVQRSASVTDCIRAIEDRA*
back to top

mRNA from alignment at Contig_42:426673..430210+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5666 ID=mRNA_5666|Name=jgi.p|Trimin1|166292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3538bp|location=Sequence derived from alignment at Contig_42:426673..430210+ (Tribonema minus UTEX_B_3156 )
ATGATGGCTGCGACGGGCATTCGCGGCGACATCATCGACAAGCTAGGCCT CAATGGCCGGCGAGACATCGACAGGATCGCATTCATCTTGTTTGGCTTGG TGGTGGGATCATTTCTGAGCTCGACCAGCCTCATTGAGTTCCTGCCAGGG CCTGACATTGTCAGGTTCACCGCATCATGGGTGATTGCTTTCATACCATA TGGATTTCTCACGCTGGGCATCGCAAAGCCGGCGCTGCTGCAGAAGTCGC TGGTCAAGGCGTTTTCTGTCAACCCGGAGTATCGGGAGAGGCTTGCGAGG TGAGCGAGCAGCAGCTTACTCTGATATCGTAAAAAACATTGTGTTGCCAT GCGTCACTCTGATCATTCAAGGGTCATATCATGCACGCCGAAGCTTGTGT AGTATTGGCGTTGAGTTATTACTAATAGTCTACGTTGTGTGTAATGCGTT GATCCTTCGTGATAACAAAACCATGCCGCATCGCTCTGCGCATCGCCTTT GCAAATGCCAGCAGATGACAGCTCCGAAAGCCGGCAATGCAACATATTCG TCACGGCAGATCCAAGTGTCTTGTCCATGCATGAGTGCGGCCTTTTTGCA CTCATGCACAATGCCTCTGTCAGTACACCGTTTGGTACAAACGTACTTCA CTTTTATGGTACACCTGCGGACTTGCGAGTACAATCATCTCTGCAGACTT GCGAGTACACTTTCCTCCTGGCATTGTCAGGCTGCATATCGCTGCCACTT ACTACGCCATTGCACAGGCTACACACTCATTGGTGTAAGCAAACCCTCAA TGACATTGGAGGTTTTTGAGTTGAAGCGATCCTGGCAACTGACATGTTGT ACATAATTTGGTCTTGTGGTGGTAAAACATGAGTGAAAATTGCTGCAGTC ACCTGACACAAGCTGGCAGTAATGCGCAGATACTACATTCAGAGCATGTT GGCCGTCTACATGGCTTTTACCGATCGTCTGCTACTTCCAGCCATACGCA AAGGACAAGCTCATCACGCTGTAGAACCTTTATGACACCTCGTACGTTTT TCACCACCATGTTTCAAGCACAATGTTGAGCTACTTAGTGTGTGCTGTTT GATGAGATGTGTGTTGAAACACGCAGCGGCCAAGATGCCTACCCTGTACC TGGGTTTGAACTTTAGTGCCTCAAGATATACGGCGTAGTGAACTCACACT CCAGAAGGATGAAGCAGATATGCCTCAGCATCTGTGTGTGTCTTGTAGGC ATCAGCAAGATGCAGCCTGTACCTGCTGACATGCACTTTTCGCAGGTGTC AAACGCACACACAGAGTCGACTATTTGCACTACGTGTTCGATAGCACTCC CATGTCTTACTTCACATACAAATTACTGAACGATGGCGCATACTTCGAAG TATACCGTTTCAACGGGCAGAATTCATGTATCCCATACTTGAAGTAGATG TTTGCATTCAAGGGTACTGGCAGAAATTTTCAGCAGTTTTGTACTGTTTT GTTCATGTGTACAAGCTGCAGTGCAATGGTACAGTTACTGGTGACTGCCC ATTGCAGAAGACACTGGTGCAAGGCTTTATCAGGGACATTGTCAGAAACA CCTTCACCAGTGACACATGTAAGGGCGCACACATACATACATACATACAT ACATGCCCACATACAAAAGTAACCATTGTCATGCACTCGCTGCTCGCGCA GACACGAAGCGGGGCACTTTCTGGTGGGTTACCTCTGCGGCATGCCCATA GAGAGCTACCAGGCGGACTCCGTCACCAATGCGGTGGCGTTCTTTCCCGC GTTCTACAGCTCTGACGCGATGCTGCGGCGCATACCGGAGCCGGAGCTGC TGCGGCTAGCCGCCGTATCGCTGGGGGGGATTGTTGCGGAGTGCTTGCGG TTTGGGACGAGCGAGGGGGGGTATGCGGATCTGATGCAGCTTAACGCGCT GCTGCGGTGCGGCGAGGAGAGGCTGTCGGACAGGGAGCAGCAGGTCAGTG CTCAGCAGTGGGAAGGGGGGTGGTATGTTGATGCTGCACCTCACAGACAG GGAGCAGCAGGGCAGTGTTCAGGCGCAGGCAGGGATGGTATGTATTCACT CTGCAAGGGATGGTATGCGTTTATGAAGTGAGTCTTGTGAGGCTCACGGA CAGGGAGCAGCAGGTCAGTGCTCAGCAGCTGGAAGGGGCTGGTACGTATT GCTGCAAGGCATGGTTTGTATTCGCGAAGCGAACTTTGTGAGGCTCTTGG ATAGGGAGCAGCAGGTCAGTGCTCAGCAGCAGGAAGGGATGATAACATAT TTAAGTTGAGCTGCAAGGGATGGTATGCATCTACGCTGCGGATTTGTCCG TGAGGCTCACGGACAGGGAGCAACAGGTCAGTGTTCAGCAGCAGCGGCGG CAGCAGCATCAGCAGCGGCAGCAGCATCAGCAGCGGCAGCAGCAGCAAAG GATGGCAATCACAATGCAAATGTTGCATTTGGCTCCTGTATGACCACAGT CATGAGCCTTGATGACAGAGCGGGTTCATTGGACTTATCGTAAATTCAGC GTTCAAGTCTGTATATATAGGCATTAGAGCTGGAAATCGTGCTCCAATGT ACATATGCTGTTGGCGGTTTTTGCAAAGATAGTGCGCCTTGCGGAACTTT CAAGATGACTGCTCGAACACTGGGTGCCATCGGGCAGACAATGTTTTCGC ACACAGCTTGTGCGACATGCGCCTTATTCAATCACAAAGGTCGCCCCGGC GTGACTGAACAAGAAGATGACAGTTGACAGGCAAACTTGTGCCATGGCGG TTTCCAAAGCTTTTCTAAGCATTGCGTACATGGTGAAAACCTGCAGATTA TACCAGGGACCTGGGCTTAGACGCAGTAGACGCCCGAGTAACCAGCGCAA GTAGAAAAGTGTGATGCTTGCACCTGCCTGTTCGATACGGGCGTTCTGAT TTTTTGTACAAGTCATGATCTTGTCACAGGCGCTGATGTCTGCATTGACC AATACTGTCAAGGCTGCGCAGCTTCTGTGAGCTGTGCTTCGGCGCATCGC CCATCAGCACACCTGTGCATGTATGTATATTGCCCCCCCCTGCCATCAAC CGTGGTTTCTGGCCATGGCCTGGGCGAATGCCGACATTTCAGATTACTGT GAAGTATATGAGGCCATAACGCAGTGAGGGAACTAGTGTAGCCCCCTGGT AGCCCACTGCACAGGTGTTGCATGACAATGCTGACATTTGATCATCAATG GTTGCCTCAACACGCAGTGCGAGACATACTTGACCTCCCTCTCAATTAAC AATGCAGTCAATTGGATGGTCAATGGGTGGCGCATATGCGTATGCAATGC ACGGTCTAAAACCCCTGCAACCCAATTTGCAATTTGCGCTGGTGCCGCAG GATCGCGTGCGCTTTGCGGCTGTCATGGCGCACTCATACCTCAAAACGCA TGGCGATGCGTTGGATCGATTGACAGCGGCGGTGCAGCGGAGCGCCAGCG TCACGGACTGCATACGCGCCATTGAGGATCGTGCATAG
back to top

Coding sequence (CDS) from alignment at Contig_42:426673..430210+

>mRNA_5666 ID=mRNA_5666|Name=jgi.p|Trimin1|166292|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=729bp|location=Sequence derived from alignment at Contig_42:426673..430210+ (Tribonema minus UTEX_B_3156 )
ATGATGGCTGCGACGGGCATTCGCGGCGACATCATCGACAAGCTAGGCCT
CAATGGCCGGCGAGACATCGACAGGATCGCATTCATCTTGTTTGGCTTGG
TGGTGGGATCATTTCTGAGCTCGACCAGCCTCATTGAGTTCCTGCCAGGG
CCTGACATTGTCAGGTTCACCGCATCATGGGTGATTGCTTTCATACCATA
TGGATTTCTCACGCTGGGCATCGCAAAGCCGGCGCTGCTGCAGAAGTCGC
TGGTCAAGGCGTTTTCTGTCAACCCGGAGTATCGGGAGAGGCTTGCGAGA
CACGAAGCGGGGCACTTTCTGGTGGGTTACCTCTGCGGCATGCCCATAGA
GAGCTACCAGGCGGACTCCGTCACCAATGCGGTGGCGTTCTTTCCCGCGT
TCTACAGCTCTGACGCGATGCTGCGGCGCATACCGGAGCCGGAGCTGCTG
CGGCTAGCCGCCGTATCGCTGGGGGGGATTGTTGCGGAGTGCTTGCGGTT
TGGGACGAGCGAGGGGGGGTATGCGGATCTGATGCAGCTTAACGCGCTGC
TGCGGTGCGGCGAGGAGAGGCTGTCGGACAGGGAGCAGCAGGATCGCGTG
CGCTTTGCGGCTGTCATGGCGCACTCATACCTCAAAACGCATGGCGATGC
GTTGGATCGATTGACAGCGGCGGTGCAGCGGAGCGCCAGCGTCACGGACT
GCATACGCGCCATTGAGGATCGTGCATAG
back to top