mRNA_5662 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|349390
Unique Name	mRNA_5662
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|349390 vs. uniprot
Match: A0A835YSV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV2_9STRA)

HSP 1 Score: 482 bits (1241), Expect = 2.840e-168
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1

Query:    1 MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY 981
            MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY
Sbjct:    1 MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLSGGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGELVRLAADVGNLSIVALGTERAAKAVVLVLAXXXXXXXXXXXXXXXXXXXXXXXXVAXXXXXXXXXXXGDQGGLVVLAALEEALAVPXXXXXXXXXXXXXXXXXAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWAHHWTNGDVNVGRNGSIDGSGYTFWHGGXXXXXXXXXXXXXXXXXXXXXXXSRVSCAFRWAHRRPDPCADRWRYCWRY 327

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|349390 vs. uniprot

BLAST of jgi.p|Trimin1|349390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YSV2_9STRA	2.840e-168	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_42	contig	Contig_42:406950..410062 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|349390\|estExt_Genemark1.C_Ctg_420061
Description	Alpha-tubulin suppressor and related RCC1 domain-containing
COG category	DZ
Max annot lvl	28221\|Deltaproteobacteria
EggNOG OGs	COG5184@1\|root,COG5184@2\|Bacteria,1R504@1224\|Proteobacteria,42YUY@68525\|delta/epsilon subdivisions,2WU6Z@28221\|Deltaproteobacteria,2YUNM@29\|Myxococcales
Evalue	0.000604
Seed ortholog	502025.Hoch_2677
Hectar predicted targeting category	other localisation
TranscriptId	349712
Track	FilteredModels1
ProteinId	349390

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349390	gene_5662	Tribonema minus UTEX_B_3156	gene	Contig_42 406950..410062 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|349390	Trimin1\|349390\|estExt_Genemark1.C_Ctg_420061	Tribonema minus UTEX_B_3156	polypeptide	Contig_42 406950..410062 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_5662_1	exon_5662_1	Tribonema minus UTEX_B_3156	exon	Contig_42 406950..407256 +
exon_5662_2	exon_5662_2	Tribonema minus UTEX_B_3156	exon	Contig_42 407349..407413 +
exon_5662_3	exon_5662_3	Tribonema minus UTEX_B_3156	exon	Contig_42 408579..408662 +
exon_5662_4	exon_5662_4	Tribonema minus UTEX_B_3156	exon	Contig_42 408789..408869 +
exon_5662_5	exon_5662_5	Tribonema minus UTEX_B_3156	exon	Contig_42 409399..409508 +
exon_5662_6	exon_5662_6	Tribonema minus UTEX_B_3156	exon	Contig_42 409627..410062 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_5662	CDS_5662	Tribonema minus UTEX_B_3156	CDS	Contig_42 406950..407256 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_42:406950..410062+
coding sequence from alignment at Contig_42:406950..410062+

spliced messenger RNA

>mRNA_5662 ID=mRNA_5662|Name=jgi.p|Trimin1|349390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_42:406950..410062+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTGTTCGGCAGCGCGGACAACATCAACGACGATGCGAGCGACAC
GCCAGCGCCTGTTGACCTGGTGGTCGACACCGTGGAGCAGCGCTGCACGG
CGAGTGCTGTCGTCACCCCTGGCACCTACCACACGTGCACACTGCTCAGT
GGCGGCCAGGTGGCGCGCTTCGGCCTTAGTGACGATGCGCAGCTGGGCCA
GGGGAACACCGGCCAGCTGCGCGATGACCCCAGCGAATTTGGCGCGAGCG
TTTCAATTGTCAACCTCAGCGCAGGCGGCGTCCAGCAGCTAGGCGAACTC
GTGCGATTGGCTGCCGACGTGGGCAACCTGTCCATCGTGGCACTGGGCAC
GGAGCGCGCAGCGAAGGCTGTGGTGCTGGTGCTGGCGGCGGCGGTGGCGG
CGGCGGCAGTGGCGCCGTCTGTGGTGGCGGCGGCGGCCGTGGCGGCGGCG
GGGGGGGCGGTGGCGGTGGTGGCGGTGCTGGTGGTGCTGGTGGTGCTGGG
GGACCAGGGGGGGCTGGTGGTCCTGGCGGCATTGGAGGAGGCCCTGGCGG
TGCCGGCGGTGCCGGCGGCGCCGGCGGCGCCGACGGCGCAGGTGGCGTGG
GCGGCAGCGGCGGCGCTGGTGGACGACGCAGGCGACGCCCTACGACCCTG
CTCAGACGCCTGGAGCGTCACCGGCGCCCACGGCGCAGTCCACAGGTGGC
GGAACGGCGCCGGGCACGCGCACGGGGTCTCCCGCACCGTCTGCTGGGCC
CACCACTGGACAAACGGCGACGTCAACGTCGGCCGCAACGGCTCCATCGA
CGGCAGCGGCTACACCTTCTGGCACGGCGGCACAGACGGCAGCGTCAACG
CCGGCCGCGACGGCTCCTTCGACGACAGCGGCTACACCTACTGGCACGGC
AGCAGAGTCTCCTGCGCCTTCCGGTGGGCCCACCGGAGGCCAGACCCCTG
CGCCGACCGCTGGCGCTACTGCTGGCGCTACCGCTGGCATCACCGCTACT
GCTACCGCTGGCGCGACCGCTGCCGCGACCCTTGGCGCGACCGCTGGCGC
GACTGCTGGCGCGACCGCTGGCGTCACTGCTAG

protein sequence of jgi.p|Trimin1|349390

>Trimin1|349390|estExt_Genemark1.C_Ctg_420061 ID=Trimin1|349390|estExt_Genemark1.C_Ctg_420061|Name=jgi.p|Trimin1|349390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MGVFGSADNINDDASDTPAPVDLVVDTVEQRCTASAVVTPGTYHTCTLLS
GGQVARFGLSDDAQLGQGNTGQLRDDPSEFGASVSIVNLSAGGVQQLGEL
VRLAADVGNLSIVALGTERAAKAVVLVLAAAVAAAAVAPSVVAAAAVAAA
GGAVAVVAVLVVLVVLGDQGGLVVLAALEEALAVPAVPAAPAAPTAQVAW
AAAAALVDDAGDALRPCSDAWSVTGAHGAVHRWRNGAGHAHGVSRTVCWA
HHWTNGDVNVGRNGSIDGSGYTFWHGGTDGSVNAGRDGSFDDSGYTYWHG
SRVSCAFRWAHRRPDPCADRWRYCWRYRWHHRYCYRWRDRCRDPWRDRWR
DCWRDRWRHC*

mRNA from alignment at Contig_42:406950..410062+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5662 ID=mRNA_5662|Name=jgi.p|Trimin1|349390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3113bp|location=Sequence derived from alignment at Contig_42:406950..410062+ (Tribonema minus UTEX_B_3156 )
ATGGGGGTGTTCGGCAGCGCGGACAACATCAACGACGATGCGAGCGACAC
GCCAGCGCCTGTTGACCTGGTGGTCGACACCGTGGAGCAGCGCTGCACGG
CGAGTGCTGTCGTCACCCCTGGCACCTACCACACGTGCACACTGCTCAGT
GGCGGCCAGGTGGCGCGCTTCGGCCTTAGTGACGATGCGCAGCTGGGCCA
GGGGAACACCGGCCAGCTGCGCGATGACCCCAGCGAATTTGGCGCGAGCG
TTTCAATTGTCAACCTCAGCGCAGGCGGCGTCCAGCAGCTAGGCGAACTC
GTGCGATGTGCTCGACAAAAGGCATGGTGAAGTGCTGGGAGCTCGATGAC
AAAGGCAAGCTTGTCAATGGCCAGGGCAAAACGGCACCTCTTGGCGCAGT
GGCTGCCGACGTGGGCAACCTGTCCATCGTGGCACTGGGCACGGAGCGCG
CAGCGAAGGCTGTGGTTCCAGGAGACGATCACAATTGCGCGCTCTCTTGA
CTGGTGGGGCGATGGCATGTTGGGGGTATGGAGACATGGACAGTTCGGCA
TGGACAGTCGTGACAGCATAGTCAATGACAGAATGGAAATGGGTGACTTG
GTCTGCCACTGTTCTGCTCCAGGGCTGATCAGCAGCTTTCATATCCTTGC
ATCATTTCATGAATGTGTTAACCGTGTGGAACACCATCAACCAACTACGA
CTTGCAACAGCTTGCGCCGTGCATTGCGTCGTGTTGCCACCCTATCTGTT
AAATTATGCGCACGTGCATTTGGAAATTGATTACTTTCAAAGATGGCATT
CGTGGAGTCTGCAAGGCATCATGACTTGCAAAGTGTTGTTCAAGTTCTCA
GGTCAAGTCCATAGCATGCTTCGTGAACAGTCATGGGGTATGGCATGACG
TGGGGTTATGAGTTATGACCAATTCTGTTGAATACTGGCTCCAACTAAGT
CGTCCATGACTTGTCTCTCATGCCTGGGCCTTCTGGTGGTTTACTCGTGC
TTCGGGAGTGTACAGTGTTCTGAAGGCAAACTACTAAGATTCTTGGTTTC
ATCGGTGTGACTCTCCCTGGCTCGGACACCGCCCCTTGCCCCCACGCGTT
TCACGCTGTGTGTGGTTCTGTGATGATCACGCTGTGTGTGCTGCTGGTTC
TGCTAATTCCAGAAGCACCTGCACAAGGCAAGCACAAGCGCGCAGCTTAG
TACATCTGTCAGATCTCTCTGTGCGAGTGTACAGTCTGCAAGTCGCGAGC
TGGTTAGTGAGGTGCGAGCCGGTTGGCTGAGCGTCTCGCTGAGCGTCGCC
CGCCAAGCAATTTCAAGCAGCAGCCATGGGCGCCTTGTGGCTGAACGCTT
ACCGTTGCGATGGTGTGACAGCGAGGTCGATGTACCTTCTCTGTCGGGCA
CGCGACACCGTGACCACATCATAACCGTGATGCGAGCGACGACTCAAGGC
ATGATTCTCGCTGAAGCTGAGCTCGGCATGCTGTATGCAATCCTGCCTCG
ACGCAGGAGCGCCGTCTCCTGCTGTGTACAGTAGCATCCAAGGCTTGCAG
ATTTGTCATAGCGAGTTTCTGTGTACATGCACGACAGCCAAATTCACCCT
CAGCTTGTCACAAACATATTCATGCACAGGTGCTGGTGCTGGCGGCGGCG
GTGGCGGCGGCGGCAGTGGCGCCGTCTGTGGTGGCGGCGGCGGCCGTGGC
GGCGGCGGGGGGGGTGTAGGCATGCCAACTGCACCTCCATCGCCGCCACC
ATCCACGGCCATCTCCGTCGCACCTAGCATGGCCCCCACCATGCAACCCA
CCATGCTTGGAACCACCACAACATTTGGCGGCGGCGGAGGCGGTGGCGGT
GGTGGCGGTGCTGGTGGTGCTGGTGGTGCTGGGGGACCAGGGGGGGCTGG
TGGTCCTGGCGGCATTGGAGGTGGCGGGACTTTTGGTGGGGGTGGCTTTG
GTGGGGGGGGCGGCGGGATTGGTATGATACCGGGGTCACGTGGTCCGGCA
GGCCCTCCTGGGGCCCCAGGCAAGGGTGGGCCAAGTTGTCGTTCTCACCA
TCAAGAATCCTTAGTCATATGGGGAGTTGCATGATTGACTGTAGTGACAG
TGGTGGGCGAATCTTACTGTTCAAACCCAGTGCATGCTGCACCAGTCATT
GAGACAACAACCTGCTGCAGGGGGGTGCATACACAAGATCATGCTGTTGA
ACCTCGTACGGTCTGCTTTGATGGCAACTCCAAATGCATGCGCGCTGGCA
AGGATGCTCAGCGTCCCTCAATACTGCTTCTACTCTCTCCAACCATGCAC
GCCGCACCATACTGTTTGCTTCCACAATGGCACTTCCTCAGAAGCCTGCT
GCATTGCCACACCCGACATCAAAGCCATGTGTACACAGATGCACTCTTTC
TTTTGCTGTCCTCTGACGCATTGTTGCGCCCCCCCCTCACTACCCGCAGG
AGGCCCTGGCGGTGCCGGCGGTGCCGGCGGCGCCGGCGGCGCCGACGGCG
CAGGTGGCGTGGGCGGCAGCGGCGGCGCTGGTGGACGACGCAGGCGACGC
CCTACGACCGTACCATTGCCAGCCCCTTCTGCGGCACCGACTCTGGTGCA
AACACTTGCATCAACGCCTCACGTCACGGCGCCTCAGACGGCGCCCGTCA
CCGGAGCCTCCTCCATCGCCCCCACAGCTGCTCAGACGCCTGGAGCGTCA
CCGGCGCCCACGGCGCAGTCCACAGGTGGCGGAACGGCGCCGGGCACGCG
CACGGGGTCTCCCGCACCGTCTGCTGGGCCCACCACTGGACAAACGGCGA
CGTCAACGTCGGCCGCAACGGCTCCATCGACGGCAGCGGCTACACCTTCT
GGCACGGCGGCACAGACGGCAGCGTCAACGCCGGCCGCGACGGCTCCTTC
GACGACAGCGGCTACACCTACTGGCACGGCAGCAGAGTCTCCTGCGCCTT
CCGGTGGGCCCACCGGAGGCCAGACCCCTGCGCCGACCGCTGGCGCTACT
GCTGGCGCTACCGCTGGCATCACCGCTACTGCTACCGCTGGCGCGACCGC
TGCCGCGACCCTTGGCGCGACCGCTGGCGCGACTGCTGGCGCGACCGCTG
GCGTCACTGCTAG

Coding sequence (CDS) from alignment at Contig_42:406950..410062+

>mRNA_5662 ID=mRNA_5662|Name=jgi.p|Trimin1|349390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1083bp|location=Sequence derived from alignment at Contig_42:406950..410062+ (Tribonema minus UTEX_B_3156 )
ATGGGGGTGTTCGGCAGCGCGGACAACATCAACGACGATGCGAGCGACAC
GCCAGCGCCTGTTGACCTGGTGGTCGACACCGTGGAGCAGCGCTGCACGG
CGAGTGCTGTCGTCACCCCTGGCACCTACCACACGTGCACACTGCTCAGT
GGCGGCCAGGTGGCGCGCTTCGGCCTTAGTGACGATGCGCAGCTGGGCCA
GGGGAACACCGGCCAGCTGCGCGATGACCCCAGCGAATTTGGCGCGAGCG
TTTCAATTGTCAACCTCAGCGCAGGCGGCGTCCAGCAGCTAGGCGAACTC
GTGCGATTGGCTGCCGACGTGGGCAACCTGTCCATCGTGGCACTGGGCAC
GGAGCGCGCAGCGAAGGCTGTGGTGCTGGTGCTGGCGGCGGCGGTGGCGG
CGGCGGCAGTGGCGCCGTCTGTGGTGGCGGCGGCGGCCGTGGCGGCGGCG
GGGGGGGCGGTGGCGGTGGTGGCGGTGCTGGTGGTGCTGGTGGTGCTGGG
GGACCAGGGGGGGCTGGTGGTCCTGGCGGCATTGGAGGAGGCCCTGGCGG
TGCCGGCGGTGCCGGCGGCGCCGGCGGCGCCGACGGCGCAGGTGGCGTGG
GCGGCAGCGGCGGCGCTGGTGGACGACGCAGGCGACGCCCTACGACCCTG
CTCAGACGCCTGGAGCGTCACCGGCGCCCACGGCGCAGTCCACAGGTGGC
GGAACGGCGCCGGGCACGCGCACGGGGTCTCCCGCACCGTCTGCTGGGCC
CACCACTGGACAAACGGCGACGTCAACGTCGGCCGCAACGGCTCCATCGA
CGGCAGCGGCTACACCTTCTGGCACGGCGGCACAGACGGCAGCGTCAACG
CCGGCCGCGACGGCTCCTTCGACGACAGCGGCTACACCTACTGGCACGGC
AGCAGAGTCTCCTGCGCCTTCCGGTGGGCCCACCGGAGGCCAGACCCCTG
CGCCGACCGCTGGCGCTACTGCTGGCGCTACCGCTGGCATCACCGCTACT
GCTACCGCTGGCGCGACCGCTGCCGCGACCCTTGGCGCGACCGCTGGCGC
GACTGCTGGCGCGACCGCTGGCGTCACTGCTAG