mRNA_5660 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|66766
Unique NamemRNA_5660
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A835YU88_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU88_9STRA)

HSP 1 Score: 481 bits (1237), Expect = 3.050e-171
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 3 
Query:   51 MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE 737
            MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE
Sbjct:    1 MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE 229
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BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A7S0T4L3_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4L3_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-15
Identity = 68/287 (23.69%), Postives = 114/287 (39.72%), Query Frame = 3 
Query:   69 CSRQDSRFVRAVITQVLL-AVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDA------------------PTCAAATLTAHRRRCRDVMAQCFP-------------------QQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE*GLVSHCSTCGAWFLKVYEHGAWPV 812
            CSR+ SR  R V+ +     V   ++   P +CP +   DMY + E  K  V+ T W+  Y  K+F SE Y+DKH+D++H ++ P     CLAD C +  CD                     C+   L   R  C  +M +CFP                     A+ +L++     +C    C+G  R+               H   +       + AV V++L  +Y+ ++   ++     DL     RR R+++          +    WF ++ +  AWP+
Sbjct:   68 CSRERSRHARGVLDEFFYPVVVDKNRFTLPLNCPFDRAQDMYLEHERHKEQVRRTQWKSLYSDKVFRSEYYVDKHMDSRHIDKIPAGADVCLADYCEVLQCDEHQAYKHPEVRRKIGAARQARCSEEKLKGVRHFCEVLMNRCFPTGGGSHSGXXXXXXXXXDADPAAVQLHEYFVRHHCELLTCEGTQRM---------FHLMRGHHAEFHQGAYITMLAVLVVLLGLYYLAIYCWTKDLRRTRDL-----RRARKETAA--------TRLAGWFARLSK--AWPL 330
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BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: UPI000D738892 (uncharacterized protein LOC112553463 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D738892)

HSP 1 Score: 84.3 bits (207), Expect = 1.520e-15
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 3 
Query:   54 SAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQAS 455
            S+ QRC R  SR VR V+ + LL        E   +CP     D +  QE+ K+      W C +C K F+SE +LDKH D +HP+        CL D+C +F CD  +            C    +    R+C +V+  C P   S
Sbjct:   19 SSVQRCDRGRSRLVRKVVHEKLLPAFSNLNTEPSPECPFSTTRDKFRVQESHKSIKDGVRWVCHFCGKAFISEYFLDKHFDNRHPDRVENKDSVCLEDVCEVFRCDVISGAMTPDYWDIALCIEDDMNRIYRKCTEVVKMCVPSGLS 165
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BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A2T7NIT3_POMCA (C2H2-type domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NIT3_POMCA)

HSP 1 Score: 84.3 bits (207), Expect = 8.600e-15
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 3 
Query:   54 SAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQAS 455
            S+ QRC R  SR VR V+ + LL        E   +CP     D +  QE+ K+      W C +C K F+SE +LDKH D +HP+        CL D+C +F CD  +            C    +    R+C +V+  C P   S
Sbjct:  275 SSVQRCDRGRSRLVRKVVHEKLLPAFSNLNTEPSPECPFSTTRDKFRVQESHKSIKDGVRWVCHFCGKAFISEYFLDKHFDNRHPDRVENKDSVCLEDVCEVFRCDVISGAMTPDYWDIALCIEDDMNRIYRKCTEVVKMCVPSGLS 421
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BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A3S1BQ57_ELYCH (C2H2-type domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BQ57_ELYCH)

HSP 1 Score: 76.3 bits (186), Expect = 1.750e-12
Identity = 44/157 (28.03%), Postives = 70/157 (44.59%), Query Frame = 3 
Query:   45 AVMSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQASPRLYDAL 476
            ++ S  + C R  SR V  V+ + +  V      +    CP  L  D+YA QE  K     + W C +C K F+SE +LD+H + +HP+   T    CLAD C +F CD  +            C  + +     +C+ ++  C P + +    D L
Sbjct:   34 SMSSPEKVCQRAKSRVVAKVVREKMFPVFNELGVKLNPSCPFSLQRDVYALQEDHKVQEGSSRWTCNFCGKSFISEFFLDRHFENRHPDSIQTGDIVCLADACDVFRCDIISGVAQPDYWDIALCLESDMQELLTQCQTLVEACIPSELTKNETDTL 190
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YU88_9STRA3.050e-171100.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0T4L3_9CHLO1.500e-1523.69Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
UPI000D7388921.520e-1531.97uncharacterized protein LOC112553463 n=1 Tax=Pomac... [more]
A0A2T7NIT3_POMCA8.600e-1531.97C2H2-type domain-containing protein n=1 Tax=Pomace... [more]
A0A3S1BQ57_ELYCH1.750e-1228.03C2H2-type domain-containing protein n=1 Tax=Elysia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:396078..397542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|66766|CE66765_34
Descriptionzinc finger
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs28JBI@1|root,2QRQG@2759|Eukaryota,37KQU@33090|Viridiplantae,3GA52@35493|Streptophyta,3HYUP@3699|Brassicales
Evalue5.49e-26
Seed ortholog28532.XP_010555915.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-28_001570.1
TranscriptId67088
TrackFilteredModels1
ProteinId66766
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66766gene_5660Tribonema minus UTEX_B_3156 geneContig_42 396078..397542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66766Trimin1|66766|CE66765_34Tribonema minus UTEX_B_3156 polypeptideContig_42 396157..397492 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5660_3exon_5660_3Tribonema minus UTEX_B_3156 exonContig_42 396078..396639 -
exon_5660_2exon_5660_2Tribonema minus UTEX_B_3156 exonContig_42 397165..397308 -
exon_5660_1exon_5660_1Tribonema minus UTEX_B_3156 exonContig_42 397430..397542 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5660UTR3_5660Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 396078..396156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5660CDS_5660Tribonema minus UTEX_B_3156 CDSContig_42 397430..397492 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5660UTR5_5660Tribonema minus UTEX_B_3156 five_prime_UTRContig_42 397493..397542 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5660 ID=mRNA_5660|Name=jgi.p|Trimin1|66766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_42:396078..397542- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTTTGCCGACCACTGAGACAGCGCATGAATTGGCTCCAAATCCGGCTGTC
ATGTCAGCTCATCAGCGTTGCTCCAGACAAGATTCCCGATTTGTCAGAGC
CGTCATTACACAGGTGCTCCTTGCGGTGCCAGGTGCAGACCAGCATGAGA
GACCGGCGGATTGCCCGCTCGAGTTGGGAGATGACATGTACGCACAGCAG
GAGGCTGACAAGACGTTTGTGAAATACACGGGATGGAGGTGCCCCTACTG
TTCTAAGATATTCGTTTCCGAGCTATACCTCGACAAGCACCTGGACACGA
AACACCCTGAGGAGGCGCCCACGCACGGCCGCTGCTTAGCAGACCTCTGT
CCCATGTTTGGCTGTGACGCTCCAACGTGTGCAGCCGCCACGCTCACTGC
CCACCGCCGCCGCTGCCGCGACGTGATGGCGCAGTGCTTCCCGCAGCAGG
CGTCGCCGCGTTTGTACGACGCGCTAGCCCTGCGCTACTGCAACGCGTTC
GCGTGCGACGGCGGCGGCAGACTGCGGCTGCCGGCGCCCGCTGACATCAC
TCTGACCGCGACCGTGAGGCACTGGGGGCACTACTGGGGGAGCGTGAGAG
GGGTGATCACTGCAGTGGCCGTGCTGGTTCTTGTAGCTTTTTATGTGGTC
CTGTGGCTGATCCGCAGAGAAAATACCATGCAGGATGATCTGTGGCAATT
TCGCCGGCGGCGGCGGCGGCGACAGAGCAAAGTGGAATAGGGACTGGTGT
CACACTGCAGCACTTGTGGAGCCTGGTTTTTGAAAGTATATGAGCATGGT
GCCTGGCCTGTCCACTTTA
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protein sequence of jgi.p|Trimin1|66766

>Trimin1|66766|CE66765_34 ID=Trimin1|66766|CE66765_34|Name=jgi.p|Trimin1|66766|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQ
EADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLC
PMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAF
ACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVV
LWLIRRENTMQDDLWQFRRRRRRRQSKVE*
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mRNA from alignment at Contig_42:396078..397542-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5660 ID=mRNA_5660|Name=jgi.p|Trimin1|66766|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1465bp|location=Sequence derived from alignment at Contig_42:396078..397542- (Tribonema minus UTEX_B_3156 )
CTTTGCCGACCACTGAGACAGCGCATGAATTGGCTCCAAATCCGGCTGTC
ATGTCAGCTCATCAGCGTTGCTCCAGACAAGATTCCCGATTTGTCAGAGC
CGTCATTACACAGGCAAGCCTTTGATCTGCCTGTGCGTTCCACAAGCTTG
TGACGTGCCCTCGTAGCTATGCAGCTCAGTTCGGGTGCTCAAATCTGGCA
GCTCACACTTGGGAGTGCTTCTCAATATGCACAGGTGCTCCTTGCGGTGC
CAGGTGCAGACCAGCATGAGAGACCGGCGGATTGCCCGCTCGAGTTGGGA
GATGACATGTACGCACAGCAGGAGGCTGACAAGACGTTTGTGAAATACAC
GGGATGGAGGTGCCCCTACTGTTCTAAGGTGTGTGCGGTTGGACAAAGGC
GTGCGATCACATCCAAGAGGCAACCAAGAGACGACTTGCTTTCAAGTGAA
ATGCAAAGCCCAACAGCAAACGTAGTTGAAAGCAATAGAGAGGGTCCTGG
TCTGATCGCCCATAATCACTGTACGGATTCGTGTGCTAGCAGGCGCACAT
GTGGTGATTTGTTCTGCATACAACACCAGACGCACTGTCCCAAAGAGCCA
AGCTCAGTGCGTTGTTGCTTTACTAGTGTGCAAGCAAGTGCTGTGGCGAA
TGGTACTTCGGCAAGGCTTAGAGTGCCATATGCATGCGCCACTCAGTTTT
GGGCAGCCACAATACGTCTGCCGCGAAAACTTTGCAACAAACGCCTTGTG
CAACGTGCCGCTGCGGCACGGCAAGCTCCATGCAGCACCTCATGGAAAAC
ACCTGCGGCGCAGAAGAATACCACATGCACACAATCCTCTCATTGACCTC
TCACCAACTGACACGACTCATGAGCCGACTCTGTGTCTCCCGGCGCCCCG
CAGATATTCGTTTCCGAGCTATACCTCGACAAGCACCTGGACACGAAACA
CCCTGAGGAGGCGCCCACGCACGGCCGCTGCTTAGCAGACCTCTGTCCCA
TGTTTGGCTGTGACGCTCCAACGTGTGCAGCCGCCACGCTCACTGCCCAC
CGCCGCCGCTGCCGCGACGTGATGGCGCAGTGCTTCCCGCAGCAGGCGTC
GCCGCGTTTGTACGACGCGCTAGCCCTGCGCTACTGCAACGCGTTCGCGT
GCGACGGCGGCGGCAGACTGCGGCTGCCGGCGCCCGCTGACATCACTCTG
ACCGCGACCGTGAGGCACTGGGGGCACTACTGGGGGAGCGTGAGAGGGGT
GATCACTGCAGTGGCCGTGCTGGTTCTTGTAGCTTTTTATGTGGTCCTGT
GGCTGATCCGCAGAGAAAATACCATGCAGGATGATCTGTGGCAATTTCGC
CGGCGGCGGCGGCGGCGACAGAGCAAAGTGGAATAGGGACTGGTGTCACA
CTGCAGCACTTGTGGAGCCTGGTTTTTGAAAGTATATGAGCATGGTGCCT
GGCCTGTCCACTTTA
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Coding sequence (CDS) from alignment at Contig_42:396078..397542-

>mRNA_5660 ID=mRNA_5660|Name=jgi.p|Trimin1|66766|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=690bp|location=Sequence derived from alignment at Contig_42:396078..397542- (Tribonema minus UTEX_B_3156 )
ATGTCAGCTCATCAGCGTTGCTCCAGACAAGATTCCCGATTTGTCAGAGC
CGTCATTACACAGGTGCTCCTTGCGGTGCCAGGTGCAGACCAGCATGAGA
GACCGGCGGATTGCCCGCTCGAGTTGGGAGATGACATGTACGCACAGCAG
GAGGCTGACAAGACGTTTGTGAAATACACGGGATGGAGGTGCCCCTACTG
TTCTAAGATATTCGTTTCCGAGCTATACCTCGACAAGCACCTGGACACGA
AACACCCTGAGGAGGCGCCCACGCACGGCCGCTGCTTAGCAGACCTCTGT
CCCATGTTTGGCTGTGACGCTCCAACGTGTGCAGCCGCCACGCTCACTGC
CCACCGCCGCCGCTGCCGCGACGTGATGGCGCAGTGCTTCCCGCAGCAGG
CGTCGCCGCGTTTGTACGACGCGCTAGCCCTGCGCTACTGCAACGCGTTC
GCGTGCGACGGCGGCGGCAGACTGCGGCTGCCGGCGCCCGCTGACATCAC
TCTGACCGCGACCGTGAGGCACTGGGGGCACTACTGGGGGAGCGTGAGAG
GGGTGATCACTGCAGTGGCCGTGCTGGTTCTTGTAGCTTTTTATGTGGTC
CTGTGGCTGATCCGCAGAGAAAATACCATGCAGGATGATCTGTGGCAATT
TCGCCGGCGGCGGCGGCGGCGACAGAGCAAAGTGGAATAG
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