mRNA_5644 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349377
Unique NamemRNA_5644
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A836CCP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP9_9STRA)

HSP 1 Score: 376 bits (965), Expect = 6.110e-131
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 3
Query:   69 MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653
            MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE
Sbjct:    1 MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 195          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A836CEA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA7_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.160e-87
Identity = 136/216 (62.96%), Postives = 168/216 (77.78%), Query Frame = 3
Query:    6 LTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653
            + YAF  APGH P  +AA  QM A L++NPF P IN L++VIFNALG++PA++AQLLLP SK Q+ +PAAPFVL SFAGG FLL PYLALRQYRP VDE  L GLA  +  ++GGVLTLV A GL+ +A+ +    +  E++ LF +QTLVHVS++DL LLS+V+WEPMLEDMRRRG YTDGS S  ++LAAFCAIPVLGPA Y+A RPPLL  ++
Sbjct:   57 VAYAFLYAPGHTPEGDAAVTQMTAALMTNPFSPDINQLYVVIFNALGVVPAIYAQLLLPGSKGQR-LPAAPFVLASFAGGYFLLAPYLALRQYRPCVDEAQLRGLATLSTLRLGGVLTLVFALGLLQFAITNHVWTSFEEYMLLFRSQTLVHVSSIDLLLLSVVVWEPMLEDMRRRGMYTDGSRSANIRLAAFCAIPVLGPAVYLAVRPPLLAAED 271          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A6U8J661_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8J661_9EUGL)

HSP 1 Score: 172 bits (437), Expect = 1.860e-46
Identity = 101/212 (47.64%), Postives = 137/212 (64.62%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638
            F+ YA  +APG +  A+A D  ++  +++  +  +   +F  IFN+LGIMPAV+A LLLP SKDQ+ +PA PF+ GSFA G F L PYLALR++RP     S+GG  K   +KI      VSA GLVAY +Q  A    P +L LF +Q LVHVS++DL++LS V    ++EDM+RRG Y  G    K  +AAF ++PV+GPAAY+  RP L
Sbjct:  449 FMAYAGLVAPGGSEEAQAKDLDLVMAIVN--YTGEAGHIFFSIFNSLGIMPAVYAALLLPGSKDQR-LPAVPFIAGSFALGFFALAPYLALREWRPYAPA-SIGGFTKLMENKINATFLFVSALGLVAYGLQDFA-TQWPLYLDLFGSQKLVHVSSLDLTILSCVFPFTVIEDMQRRGWYQTGDAKDKAVVAAF-SVPVIGPAAYLLLRPKL 654          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4BI97_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI97_CHRCT)

HSP 1 Score: 153 bits (387), Expect = 1.400e-41
Identity = 94/218 (43.12%), Postives = 135/218 (61.93%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGL-AKATNSKIGGVLTLVSACGLVAYAVQSGA-LATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRG-AYTDG---SGSQKLKLAAFCAIPVLGPAAYVATRPPL 638
            F++YAF  AP ++P + A D+++I     +     INA F   FN+LG++PAV+A LLLP +++Q+P+PA PFV  S A G F + PYL  RQ R  V + S GGL A+   S++     + +A  L A A+ S    A L EF+ +F    L H+ST+DL +LS ++WEPMLEDMRRR  A++ G   + +Q  +L AF  +PV+GP  Y+ TRP L
Sbjct:  114 FISYAFIFAP-NSPESAARDQEIILQFFDSARMFDINAYFFCTFNSLGVLPAVYAALLLPGAEEQRPLPALPFVGSSIALGYFGIAPYLVFRQPRTEVTQQSFGGLLARVLESRLYAAPLVAAAIALAARAIGSADDPAVLDEFVNIFQTSQLAHISTIDLVILSSIIWEPMLEDMRRRQWAWSAGETPTAAQLGRLLAFL-VPVVGPTLYLLTRPRL 329          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4Q148_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q148_9DINO)

HSP 1 Score: 144 bits (362), Expect = 3.770e-38
Identity = 93/226 (41.15%), Postives = 125/226 (55.31%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNS----KIGGVLTLVSACGLVAYAVQSGALATLPE------FLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT---DGSGSQKLKLAAFCA-IPVLGPAAYVATRPPL 638
            FL YAF LAPG +P A+  DKQ++  LIS PFD  ++ALF+ +FN+LGI P ++A  LLP + +Q PVPA PFV  SFA G F L PYLALR+YR      +   L   T +    +I  VL L  A  L  YA+ +G +  +        FL +F      HVS VD  +L +     +LED RRRG +    +   + +  L   CA +PV G  A++  RPPL
Sbjct:   75 FLGYAFLLAPGKSPEAQEQDKQLLQTLISTPFDGSVSALFVGVFNSLGIWPVIYAATLLPGAANQSPVPAWPFVGSSFALGAFGLSPYLALREYRGGKGSVAQDDLDWVTRNWLEGRINAVLLLGGAVYLTLYALGNGTIGAVAPAEAWTAFLPVFMGSLTPHVSCVDFMVLWMFYAPVLLEDGRRRGIFAGPFESWDASEKSLFVLCAGLPVFGGCAWLLLRPPL 300          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S0J5P6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5P6_9EUKA)

HSP 1 Score: 147 bits (371), Expect = 9.300e-38
Identity = 94/218 (43.12%), Postives = 131/218 (60.09%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIA-EAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAK-ATNSKI--GGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKL-KLAAFCAIPVLGPAAYVATRPPL 638
            F  Y    +PG   ++ ++ D ++I++ I++P    +N +F  +FNALG++PAV   LLLP +  QKP+P APFV  SFA G   LGPYLALR+ RP  +  + LG +A+  T SK+   G+L    A G    A      A L EF  LF    LVHVST+D ++LS   +EP+ EDM RRG + D +    + +LAAFC +PV+GP AY+  RPPL
Sbjct:  304 FSVYVAAFSPGEFSLSLDSMDNRLISNAIADP--QSLNPIFFAVFNALGVLPAVNLALLLPGANGQKPLPTAPFVGASFALGYGALGPYLALREPRPSAISRSELGFVARYVTESKLYAAGLLAASMALG-YGLATIVDVPAALSEFNQLFETSKLVHVSTIDFAILSTFAFEPIREDMSRRGWWDDDAADNNVGRLAAFC-VPVVGPCAYLLLRPPL 517          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A0M0JJ94_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJ94_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 2.180e-37
Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIAEAADK-QMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAKA-TNSKIGGVLTLVSACGLVAYAVQSGALATLPEF-------LTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT----DGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE 653
            +L+  F +  G  P     +   ++ + +    +P I   F VIFNALG++PA++A +LLP +KDQ+P P A  +  SF  G   LGPYL LRQ RP+ +    LG +A+  T SK+ GV  ++++ GL A       LAT+P+F        +LF+   +V+VS+ DL +LSL  +EP+ EDM+RRG Y     D S  +  +LAAFCA+PVLGPAAYV  RP L PL E
Sbjct:    5 YLSALFYVGSGSAPQGSPDETLAIVMNCLDTAAEPSI---FFVIFNALGVLPALYAAVLLPGAKDQRPAPPA-LIATSFFAGFGGLGPYLFLRQPRPQPISRAELGFIARTVTESKLFGVAMVLTSLGLGAK------LATIPDFDAALATYWSLFDQFGIVNVSSFDLLVLSLFFFEPLREDMQRRGWYAAPGEDPSTEEIARLAAFCAVPVLGPAAYVLARPAL-PLTE 224          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S4F170_CHRCT (Hypothetical protein n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F170_CHRCT)

HSP 1 Score: 139 bits (349), Expect = 8.330e-36
Identity = 79/179 (44.13%), Postives = 112/179 (62.57%), Query Frame = 3
Query:    3 FLTYAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGL-AKATNSKIGGVLTLVSACGLVAYAVQSGA-LATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRR 533
            F++YAF  AP ++P + A D+++I     +     INA F   FN+LG++PAV+A LLLP +++Q+P+PA PFV  S A G F + PYL  RQ R  V + S GGL A+   S++     + +A  L A A+ S    A L EF+ +F    L H+ST+DL +LS ++WEPMLEDMRRR
Sbjct:  114 FISYAFIFAP-NSPESAARDQEIILQFFDSARMFDINAYFFCTFNSLGVLPAVYAALLLPGAEEQRPLPALPFVGSSIALGYFGIAPYLVFRQPRTEVTQQSFGGLLARVLESRLYAAPLVAAAIALAARAIGSADDPAVLDEFVNIFQTSQLAHISTIDLVILSSIIWEPMLEDMRRR 291          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: A0A7S1MFT2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MFT2_ALECA)

HSP 1 Score: 137 bits (344), Expect = 1.020e-35
Identity = 89/223 (39.91%), Postives = 119/223 (53.36%), Query Frame = 3
Query:   12 YAFTLAPGHNPIAEAADKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYR---PRVDETSLGGLAKA-TNSKIGGVLTLVSACGLVAYAVQSGALATLPE------FLTLFNAQTLVHVSTVDLSLLSLVMWEPMLEDMRRRGAYT----DGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638
            YAF LAPG++P A+  D +++  ++S PFD  + ALF+ IFN+LGI P ++A  LLP +  Q PVPA PFV  SFA G F L PYLALR+YR       E  L  + +     +I  VL L  A  L  YA+ +G +  +        FL +F      HVS VD  +L +     +LED RRRG +        GSQK        +PV G  A++  RPPL
Sbjct:   55 YAFLLAPGNSPEAKELDLKVLGTMLSTPFDGTVAALFVCIFNSLGIWPVIYAATLLPGAASQSPVPAWPFVGSSFALGAFGLSPYLALREYRGSRSSAREEDLDWITRYWLEGRINAVLLLAGAVYLGLYALGNGTIGAVAPGEAWAAFLPVFMGSLTPHVSCVDFMVLWMFYGPVLLEDGRRRGLFAGPFESWEGSQKSLFVLCAGLPVFGGCAWLLLRPPL 277          
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Match: C1EIA9_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIA9_MICCC)

HSP 1 Score: 135 bits (339), Expect = 2.740e-35
Identity = 82/196 (41.84%), Postives = 114/196 (58.16%), Query Frame = 3
Query:   60 DKQMIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAPFVLGSFAGGLFLLGPYLALRQYRPR-VDETSLGGLAKAT-NSKIGGVLTLVSACGLVAYAVQSGALATLPEFLTLFNAQT-LVHVSTVDLSLLSLVMWEPMLEDMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPL 638
            D  ++  L+S PF   +N +F  +FN+LG++PAV+A LLLP +KDQ  +P  P +  SFA G F LGPYL  R+ R   V  +SLG   +    SK+        A  L+AY   +        F+ ++  Q+ L  VS+ DL++LS+ M+  + EDMRRRG Y DG+     K AAFCA+PVLGP  Y+ TRP L
Sbjct:   62 DAGLVTTLVSAPFSGAVNPIFEALFNSLGVVPAVYAALLLPGAKDQPRIPTVPPLAASFALGFFALGPYLIAREPRTEPVPRSSLGWATRTIFESKVFAAFNAAFAAFLIAYGAANFTSDAAEAFVAMWRDQSALACVSSCDLTVLSIAMYGALAEDMRRRGCY-DGA-----KAAAFCAVPVLGPCVYLLTRPSL 251          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349377 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCP9_9STRA6.110e-131100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEA7_9STRA1.160e-8762.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U8J661_9EUGL1.860e-4647.64Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4BI97_CHRCT1.400e-4143.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4Q148_9DINO3.770e-3841.15Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S0J5P6_9EUKA9.300e-3843.12Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0M0JJ94_9EUKA2.180e-3741.99Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S4F170_CHRCT8.330e-3644.13Hypothetical protein n=3 Tax=Chrysotila carterae T... [more]
A0A7S1MFT2_ALECA1.020e-3539.91Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
C1EIA9_MICCC2.740e-3541.84Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:313059..314219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349377|estExt_Genemark1.C_Ctg_420045
Max annot lvl2759|Eukaryota
EggNOG OGs28IFV@1|root,2QWFT@2759|Eukaryota
Evalue6.38e-37
Seed ortholog227086.JGI_V11_138529
Hectar predicted targeting categorysignal peptide
TranscriptId349699
TrackFilteredModels1
ProteinId349377
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349377gene_5644Tribonema minus UTEX_B_3156 geneContig_42 313059..314219 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5644_2exon_5644_2Tribonema minus UTEX_B_3156 exonContig_42 313059..313585 -
exon_5644_1exon_5644_1Tribonema minus UTEX_B_3156 exonContig_42 314037..314219 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5644UTR3_5644Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 313059..313112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5644CDS_5644Tribonema minus UTEX_B_3156 CDSContig_42 314037..314151 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5644UTR5_5644Tribonema minus UTEX_B_3156 five_prime_UTRContig_42 314152..314219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349377Trimin1|349377|estExt_Genemark1.C_Ctg_420045Tribonema minus UTEX_B_3156 polypeptideContig_42 313113..314151 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=710bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTTTCTGACATACGCTTTCACTCTTGCCCCAGGGCATAATCCGATAGCA
GAGGCAGCAGACAAGCAAATGATCGCCGACCTGATCTCGAATCCTTTTGA
TCCACAGATCAACGCTTTGTTTCTCGTTATTTTCAATGCCCTGGGCATCA
TGCCAGCGGTCTTCGCGCAGCTGTTGCTTCCAGCCAGCAAGGACCAGAAG
CCCGTGCCAGCCGCCCCCTTCGTACTTGGCTCCTTTGCTGGAGGCCTGTT
TCTGCTAGGGCCCTACCTGGCGCTCCGACAGTATCGTCCGCGTGTCGACG
AAACCTCATTGGGCGGACTGGCTAAAGCCACCAACTCCAAGATCGGGGGA
GTCTTGACGCTCGTGTCGGCCTGCGGGCTCGTGGCGTATGCCGTGCAGAG
CGGCGCGCTCGCCACGCTGCCGGAGTTTCTGACGCTCTTCAACGCTCAGA
CGCTCGTGCACGTGAGCACGGTGGACCTGTCGCTGCTCTCGCTCGTCATG
TGGGAGCCCATGCTGGAGGACATGCGGCGGCGCGGCGCTTACACGGATGG
GAGCGGGAGCCAGAAGTTGAAGTTGGCCGCGTTCTGCGCCATTCCGGTTC
TGGGGCCAGCGGCGTACGTAGCCACGCGACCCCCGTTGCTGCCGCTGGAT
GAGTAAACTTTGCGTTCTATCAGTTATCACATCAACAAATTGACTTTATT
GGAGCACACT
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protein sequence of jgi.p|Trimin1|349377

>Trimin1|349377|estExt_Genemark1.C_Ctg_420045 ID=Trimin1|349377|estExt_Genemark1.C_Ctg_420045|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MIADLISNPFDPQINALFLVIFNALGIMPAVFAQLLLPASKDQKPVPAAP
FVLGSFAGGLFLLGPYLALRQYRPRVDETSLGGLAKATNSKIGGVLTLVS
ACGLVAYAVQSGALATLPEFLTLFNAQTLVHVSTVDLSLLSLVMWEPMLE
DMRRRGAYTDGSGSQKLKLAAFCAIPVLGPAAYVATRPPLLPLDE*
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mRNA from alignment at Contig_42:313059..314219-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1161bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )
TGTTTCTGACATACGCTTTCACTCTTGCCCCAGGGCATAATCCGATAGCA GAGGCAGCAGACAAGCAAATGATCGCCGACCTGATCTCGAATCCTTTTGA TCCACAGATCAACGCTTTGTTTCTCGTTATTTTCAATGCCCTGGGCATCA TGCCAGCGGTCTTCGCGCAGCTGTTGCTTCCAGGTGAGTGTGCAGCAGGC AAACCAGTGTGGTGGTTGGTTTCATGTTGATTGCGTTGTCGCATCATCTG CAGCGATGTCATCTGCATGTGCAGTGATGAGACTTGAGCACTCGTTAAAT GTGGCTTTGCAAGCTGTTTGCTCTCGCACGCTGCAAGCAAAGATGCTGTG TTGCCTGTTGTACACGCGGTGCTGCACGTAGAAATGAGTTCTGGCACGCC CTTATTCCGCGCTGATTGAGCGCCAGCAAAATGTTTTCCTACTTCCAGCA GCTGTTGTTGTCAGACCAGCTGTGCATGTGATCGCTGCACAGAGATCATG AAGTGCATATAACTCTGACATCACCAGTGCAACTATTGCCACTATGCTGT TCATTCCACTGGACGCCGACAACCATTCCTCTACTGCACTCATCACGCCA TTTCCTGTCACTGCTGCCTCTACCACATTCGCAGCCAGCAAGGACCAGAA GCCCGTGCCAGCCGCCCCCTTCGTACTTGGCTCCTTTGCTGGAGGCCTGT TTCTGCTAGGGCCCTACCTGGCGCTCCGACAGTATCGTCCGCGTGTCGAC GAAACCTCATTGGGCGGACTGGCTAAAGCCACCAACTCCAAGATCGGGGG AGTCTTGACGCTCGTGTCGGCCTGCGGGCTCGTGGCGTATGCCGTGCAGA GCGGCGCGCTCGCCACGCTGCCGGAGTTTCTGACGCTCTTCAACGCTCAG ACGCTCGTGCACGTGAGCACGGTGGACCTGTCGCTGCTCTCGCTCGTCAT GTGGGAGCCCATGCTGGAGGACATGCGGCGGCGCGGCGCTTACACGGATG GGAGCGGGAGCCAGAAGTTGAAGTTGGCCGCGTTCTGCGCCATTCCGGTT CTGGGGCCAGCGGCGTACGTAGCCACGCGACCCCCGTTGCTGCCGCTGGA TGAGTAAACTTTGCGTTCTATCAGTTATCACATCAACAAATTGACTTTAT TGGAGCACACT
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Coding sequence (CDS) from alignment at Contig_42:313059..314219-

>mRNA_5644 ID=mRNA_5644|Name=jgi.p|Trimin1|349377|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_42:313059..314219- (Tribonema minus UTEX_B_3156 )
ATGATCGCCGACCTGATCTCGAATCCTTTTGATCCACAGATCAACGCTTT
GTTTCTCGTTATTTTCAATGCCCTGGGCATCATGCCAGCGGTCTTCGCGC
AGCTGTTGCTTCCAGCCAGCAAGGACCAGAAGCCCGTGCCAGCCGCCCCC
TTCGTACTTGGCTCCTTTGCTGGAGGCCTGTTTCTGCTAGGGCCCTACCT
GGCGCTCCGACAGTATCGTCCGCGTGTCGACGAAACCTCATTGGGCGGAC
TGGCTAAAGCCACCAACTCCAAGATCGGGGGAGTCTTGACGCTCGTGTCG
GCCTGCGGGCTCGTGGCGTATGCCGTGCAGAGCGGCGCGCTCGCCACGCT
GCCGGAGTTTCTGACGCTCTTCAACGCTCAGACGCTCGTGCACGTGAGCA
CGGTGGACCTGTCGCTGCTCTCGCTCGTCATGTGGGAGCCCATGCTGGAG
GACATGCGGCGGCGCGGCGCTTACACGGATGGGAGCGGGAGCCAGAAGTT
GAAGTTGGCCGCGTTCTGCGCCATTCCGGTTCTGGGGCCAGCGGCGTACG
TAGCCACGCGACCCCCGTTGCTGCCGCTGGATGAGTAA
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