mRNA_5603 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A835YSE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE9_9STRA) HSP 1 Score: 564 bits (1454), Expect = 3.400e-199 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1
Query: 238 QASTACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
QASTACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV
Sbjct: 80 QASTACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 406
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A6H5JQG5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG5_9PHAE) HSP 1 Score: 313 bits (802), Expect = 6.030e-92 Identity = 170/333 (51.05%), Postives = 210/333 (63.06%), Query Frame = 1
Query: 256 NLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGA-----VGG--------CLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVL 1215
+ V++HDFFDTLEKTFLL +PLVL+ GCQVLC N PGQAGTR PP P GLL W A +L EL+ VD GEMPL+ RP+ L+GIGN L +ACVNGFA+VD QLAAVLH++ AF FP +RPDLP+++WSRFVFSEGY+ ++G LALN+ AVANP+ E M++IV+GAL RDL+ L ++ LPLVL+QST N L+NAANVDPFL GR +H WSHQL+L + A V G C+G AL + L G GAFV WV GGHE RQECKR ++DV+ +L
Sbjct: 1175 SFVVVHDFFDTLEKTFLLFKPLVLKYPGCQVLCFNSPGQAGTRLPPEPEGLLTNVWVADRLDELMQHVDNMGEMPLSDRPFHLLGIGNGASIATAFACHHASKNKWKP-------------------TLRSLACVNGFATVDAQLAAVLHSAQRAFECFPPERPDLPISFWSRFVFSEGYLKSIGSDLALNILCAVANPLGVEGMLRIVRGALRSRDLTKDLKTMALPLVLVQSTDNVLINAANVDPFLEGRRPRHVWSHQLRLGGASAANNSGNVAGNRGENAVSCIGSGGELALFESLSAGAGGAFVAWVKGGHETRQECKRLVVDVLDLL 1488
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: D8LNE7_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE7_ECTSI) HSP 1 Score: 311 bits (796), Expect = 3.790e-91 Identity = 170/333 (51.05%), Postives = 208/333 (62.46%), Query Frame = 1
Query: 256 NLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTA-PAGAVGG------------CLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVL 1215
+ V++HDFFDTLEKTFLL +PLVL+ GCQVLC N PGQAGT PP P GLL W A +L EL+ VD GEMPL+ RP+ L+GIGN L +ACVNGFA+VD QLAAVLH++ AF FP +RPDLP+++WSRFVFSEGY+ ++G LALN+ AVANP+ E M++IV+GAL RDL+ L ++ LPLVL+QST N L+NAANVDPFL GR +H WSHQL+L P GG CLG AL + L G GAFV WV GGHE RQECKR ++DV+ +L
Sbjct: 1056 SFVVVHDFFDTLEKTFLLFKPLVLKYPGCQVLCFNSPGQAGTHLPPEPEGLLTNVWVADRLDELMQHVDNMGEMPLSDRPFHLLGIGNGASIAAAFACHHASKNKWKP-------------------TLRSLACVNGFATVDAQLAAVLHSAQRAFECFPPERPDLPISFWSRFVFSEGYLKSIGSDLALNILCAVANPLGVEGMLRIVRGALRSRDLTKDLKAMALPLVLIQSTDNVLINAANVDPFLEGRRPRHVWSHQLRLGGTPTVNNGGNAAGNRGENAVSCLGPGGELALFESLSAGAEGAFVAWVKGGHETRQECKRLVVDVLDLL 1369
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A2R5GUH9_9STRA (Ankyrin repeat domain-containing protein 27 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUH9_9STRA) HSP 1 Score: 233 bits (593), Expect = 4.480e-64 Identity = 137/325 (42.15%), Postives = 184/325 (56.62%), Query Frame = 1
Query: 244 STACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
S NLV+LHD FDT E + + + PL+ + G Q L LN PGQA TR P AG+LN ++ AA L ELL ++ +G+ + RP+ LVGIGN + L G+ +NGFA VD QLAAVLH+S F SFP RPDLP++Y+SRF+FS+ Y+ V L LN+YTAV NPI+ + + QGAL H+D+ L SL +PL+++QST NALVN NVDPF+ R H WSHQ +G +G + AAL + GAFVVW+ GHEVRQE K +++++ L+
Sbjct: 1111 SATPNLVVLHDMFDTCEASQIFLEPLMRKHYGSQALVLNYPGQAHTRFPKETAGVLNNEFVAATLHELLADLEHKGDFCCSFRPFYLVGIGNGANIATFFASEFGGLPEYR-------------------KCLRGLLSINGFAHVDEQLAAVLHSSVNIFESFPPTRPDLPISYFSRFLFSDDYLRRVDPALVLNIYTAVGNPITLQGRSHLCQGALRHKDMRQPLRSLKIPLIIVQSTENALVNPTNVDPFIENRMVSHLWSHQFL---DSGKIGPKAVDQMRAALRRP-----DGAFVVWLKAGHEVRQEAKAQVLEIVDSLL 1408
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A7S2BPI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BPI9_9STRA) HSP 1 Score: 217 bits (553), Expect = 5.950e-63 Identity = 133/330 (40.30%), Postives = 189/330 (57.27%), Query Frame = 1
Query: 256 NLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCP---------PAPAGL-LNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVL 1215
NLV+ HD FDT E T LL +PLV + +GCQVL N P QA TR P AP + LN +W A +L+EL+ V+ +GEM +A P+ ++GIG+ ++L + +NGFASVD QLAA+L ++ F S P RPDLPV+Y+S+F+FS+ Y+ V LALN++TAV NPI+ + ++++Q ALS D + L +P++++QST +ALVN++NVDP L R+ H WSHQ++ G LG++ S L LG+ GAFVVWV GHE+RQE K L+D+ +L
Sbjct: 56 NLVVCHDLFDTCEATRLLFKPLVEKHLGCQVLVFNYPSQAQTRFPVPTDEEAKHQAPGEVALNNEWMAPKLNELMQHVEGQGEMLFSA-PFHVLGIGHGLGIAAAFSSQFGASPRY-------------------AQSLRSLVSINGFASVDAQLAAILTSTMNVFRSIPENRPDLPVSYFSKFLFSDAYLQRVHPNLALNIHTAVLNPITLDGRIRLIQAALSMADTKDMVKRLNVPVIVVQSTEDALVNSSNVDPLLETRATSHLWSHQIEEN------GNALGKKGSKLLIDALGKP-KGAFVVWVRAGHEIRQEKKNILLDLFDLL 358
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A024TEM6_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEM6_9STRA) HSP 1 Score: 215 bits (548), Expect = 4.120e-58 Identity = 130/327 (39.76%), Postives = 171/327 (52.29%), Query Frame = 1
Query: 241 ASTACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCP-PAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
A T NL++ HDFFDTL+ T + R ++ GCQ+L N PGQAGT+ P P +LN + + + ELL + A + L + P+ LVG GN AL + VN FA +D QLA VLH + F+ FP RPDLP+ YWS+F+FS+ Y+ V +AL++YTAV N IS E ++I QGAL H DL+ L + +PLV++QS NALV NVDPFL GR+ H WSHQ G L + L Q L GAFV W+ GHEVRQE K + D++ LV
Sbjct: 757 AMTNANLIVCHDFFDTLDATKVFCRSVIKNHPGCQILLFNSPGQAGTQYPVEGPLQVLNNLFASQCVYELLAHLHASSKF-LTSVPFHLVGFGNGGNLATCLAIQYAQTWP----------------------ALASIVVVNSFAKIDAQLAGVLHGAVNLFSCFPPNRPDLPLTYWSKFLFSDAYLTRVDPNMALSIYTAVTNAISLEGRIRICQGALHHVDLASQLRGIAVPLVVVQSVDNALVAPTNVDPFLEGRACAHIWSHQHSKK-------GDLNAKAKQLLTQTLNTAEKGAFVAWLRAGHEVRQESKTFVCDLLEFLV 1053
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A5D6Y5F8_9STRA (SAM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5F8_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.540e-57 Identity = 133/330 (40.30%), Postives = 184/330 (55.76%), Query Frame = 1
Query: 244 STACNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAPAG----LLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGR-SAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
S CNLV+ HDFFDT++ T + RP++ VG + L N PGQAG+ G +LN W A ++ ELL++++ + L P+ LVG GN L + NGFASVD QLAA+LH++ F+ FP RPDLP++++++F+FS+ Y+A V LAL++YTAV N I+ + V+I +GAL H DL+ L ++ +PLVL+QS NALV NVDPFL+ R S HAWSHQ APA A G + + S L Q L S AFV W+ GHE+RQECK + ++M +LV
Sbjct: 545 SLKCNLVVFHDFFDTMDSTKVFFRPVLARNVGARALFFNFPGQAGSAYAAGERGTERAVLNNVWQARRVHELLNYLEHTKQFLLTGAPFHLVGFGNGANIAACYTILHGKAYDTH---------------------LQSLVLCNGFASVDAQLAAILHSAVNVFSCFPPARPDLPMSFFAKFLFSDAYLAKVDANLALSIYTAVTNAITLDGRVRICKGALRHVDLAGQLEAIDVPLVLVQSVENALVAPTNVDPFLQSRASVLHAWSHQQ---APAQAPAGDVRGKTSKQLRQALATPRS-AFVSWLRAGHELRQECKAYVAELMDLLV 849
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A6G0WDW1_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDW1_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.360e-55 Identity = 127/322 (39.44%), Postives = 172/322 (53.42%), Query Frame = 1
Query: 256 NLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPPAP-AGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
NLVI HDFFDTL+ T + +R ++ + +GCQ+L N PGQAG++ P +LN + + ++ ELL +D + + P+ +VG GN L VA +N FA ++ QLA +LH + F+ FP RPDLPV+Y+S+F+FSE Y+A V LAL++YTAV NPIS E +QI +GAL H DL L + +PLVL+QS N L+ NVDPFL GRS H WSHQ G L + L Q+L AFV W+ GHEVRQE K + D++ LV
Sbjct: 727 NLVICHDFFDTLDSTKVFIRSVLTKNLGCQILLFNLPGQAGSKYPVHDDLNVLNNVFISERVFELLTELDKSLKFRTSV-PFHIVGFGNGGNVAACLAIQYGKCWPQ----------------------LKSVALINAFAKIEAQLAGILHGALNIFSCFPPNRPDLPVSYFSKFLFSEAYLARVDPNLALSIYTAVTNPISLEGRIQICRGALHHVDLVSQLREIAVPLVLVQSVENVLIAPTNVDPFLEGRSCSHIWSHQHSKK-------GDLNSKAKQLLTQVLKTPEKSAFVTWLRAGHEVRQESKAYICDLLEFLV 1018
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A7S3MBB9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBB9_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.370e-55 Identity = 139/368 (37.77%), Postives = 185/368 (50.27%), Query Frame = 1
Query: 253 CNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGTRCPP---------APAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRD----LSP-----------HLPSLPL--PLVLLQSTGNALVNAANVDPFLRGRSAQHAWSHQLKLTAPA--------GA--VGGCLGQERSAALAQMLGEGG-----------SGAFVVWVPGGHEVRQECKRALMDVMRVL 1215
CN +++HDFFDT + T ++ +P+V GCQV+C N PGQA T P A +LN DW A +L ELL + G++ L P+ LVGIGN L V +NGF DPQL ++LH++ F S P RPD+PV++WSRFVFSE Y+ V LALN+YTAV+NPI+ + +I QG L HRD LSP H+P LP+ P+++LQST N+LVN +NVD FL+GR+ +H WSH L + + A GA VG LG G GAF +W GH V QE K A++D++ VL
Sbjct: 447 CNFIVVHDFFDTCDATAIMFKPIVQRHNGCQVMCFNYPGQAHTVWPRLSPAEKERGAKEPILNNDWIADRLHELLRHAEEEGDI-LLTNPFHLVGIGNGACIAAAFCQRWGRDKAYVS-------------------GLRSVVSINGFLYPDPQLTSILHSAQQVFESAPHSRPDIPVSFWSRFVFSEDYLLKVNPNLALNIYTAVSNPITNDGRAKITQGCLKHRDMRGALSPDYKPPRAGSDNHIPYLPVQVPVIVLQSTENSLVNGSNVDSFLQGRNCKHLWSHVLNVPSEAMLSHAVETGAQWVGRMSMGPEDYHKYSTLGRLGLKMVLESLRTPRGAFCMWTRNGHVVHQEYKAAVLDLLDVL 794
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Match: A0A0W8DU78_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DU78_PHYNI) HSP 1 Score: 200 bits (508), Expect = 2.710e-55 Identity = 125/329 (37.99%), Postives = 174/329 (52.89%), Query Frame = 1
Query: 253 CNLVILHDFFDTLEKTFLLVRPLVLEAVGCQVLCLNCPGQAGT------RCPPAPAGLLNADWTAAQLSELLDWVDARGEMPLAARPWRLVGIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRALCGVACVNGFASVDPQLAAVLHASAAAFASFPAQRPDLPVAYWSRFVFSEGYMAAVGQGLALNLYTAVANPISTEAMVQIVQGALSHRDLSPHLPSLPLPLVLLQSTGNALVNAANVDPFLRGRS-AQHAWSHQLKLTAPAGAVGGCLGQERSAALAQMLGEGGSGAFVVWVPGGHEVRQECKRALMDVMRVLV 1218
CNLV+ HD FDTLE T + RP+V VG Q L N PGQAG+ + +LN W A ++ ELL+++ + P+ ++G GN L +A NGFA+VD QLAAVLH++ FA P RPDLPV+++S+F+FS+ Y+ V LAL++YTAV N I+ + +++ +GAL H DLS L + +PLVL+QS N LV NVDPFL+GR+ QH WSHQ T+ L + A L + L S AFV W+ GHE+RQE K + +V+ +L+
Sbjct: 164 CNLVVFHDLFDTLENTRVFFRPIVARNVGAQALLFNFPGQAGSSYAVDDQAREEDKLVLNNMWLARRVHELLNFLQHTTQFVTTGAPFHIIGFGNGANVAACYTVLYGKNY---------------------NEYLQSLALFNGFANVDAQLAAVLHSAVNVFACLPPTRPDLPVSFFSKFLFSDAYLKKVDMNLALSIYTAVTNAITLDGRIRLCRGALRHMDLSSQLEEINVPLVLVQSVENTLVAPTNVDPFLQGRANVQHVWSHQQSHTSD-------LRPKTRAQLRKALATPNS-AFVSWLRAGHELRQEAKSYVTEVIDILM 463 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166119 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5603 ID=mRNA_5603|Name=jgi.p|Trimin1|166119|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1218bp|location=Sequence derived from alignment at Contig_42:105361..107806+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCTACGCGGTGTGCGGCCGGCCACCGCCGCCGCTGCCGCCGCAAGGback to top protein sequence of jgi.p|Trimin1|166119 >Trimin1|166119|e_gw1.42.146.1 ID=Trimin1|166119|e_gw1.42.146.1|Name=jgi.p|Trimin1|166119|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=406bp MPYAVCGRPPPPLPPQGVAQAAPPQQQQSSEARQQQQQQQQQQQQQQQQQback to top mRNA from alignment at Contig_42:105361..107806+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5603 ID=mRNA_5603|Name=jgi.p|Trimin1|166119|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2446bp|location=Sequence derived from alignment at Contig_42:105361..107806+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_42:105361..107806+ >mRNA_5603 ID=mRNA_5603|Name=jgi.p|Trimin1|166119|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1218bp|location=Sequence derived from alignment at Contig_42:105361..107806+ (Tribonema minus UTEX_B_3156 )back to top |