mRNA_5598 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|66468
Unique NamemRNA_5598
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|66468 vs. uniprot
Match: A0A836CCN6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN6_9STRA)

HSP 1 Score: 308 bits (790), Expect = 8.230e-105
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:   97 MAKPKYLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGARYSPALRKLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGATDQVKTEYQEKAVEAGGGWRAQQQNMEDAMRESHARRMRALELHRQSRDNGATFESDRK 573
            MAKPKYLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGARYSPALRKLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGATDQVKTEYQEKAVEAGGGWRAQQQNMEDAMRESHARRMRALELHRQSRDNGATFESDRK
Sbjct:    1 MAKPKYLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGARYSPALRKLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGATDQVKTEYQEKAVEAGGGWRAQQQNMEDAMRESHARRMRALELHRQSRDNGATFESDRK 159
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BLAST of jgi.p|Trimin1|66468 vs. uniprot
Match: A0A7S2GKJ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKJ3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.740e-16
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  112 YLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGARYSPALR---KLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGATDQVKTEYQE 426
            + PPD+LSD+DV ++ DVR+ VW GG  GL  G  +G        R+ P      K    NY  L  + +GA+GS +GATVSGK SV  + DI++RGA  +  TEYQE
Sbjct:   23 FTPPDTLSDDDVRQVADVRRAVWTGGLKGLAVGLFVGACGHSGAVRWLPKNMFPVKFRNANYLFLYTLGAGAIGSLVGATVSGKNSVHMMTDIYSRGAKPKF-TEYQE 129
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BLAST of jgi.p|Trimin1|66468 vs. uniprot
Match: A0A7S2KDW0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDW0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-10
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:  112 YLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGARYSPALRKLSTT---------NYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGATDQVKTEYQEKAVE 438
            Y  PDSL+DED+ RLNDVR+++W  GA G+V GSV G     L   +    +  S T         N   L VM  G +GS+L A ++G +SV  +  +F RG +    +E  +  VE
Sbjct:    7 YERPDSLTDEDMQRLNDVRREMWVNGAKGMVFGSVGGITGLSLFDMFEQKKKGRSLTLPPRFTYGRNNAFLAVMLGGVVGSYLSARLTGIRSVRDLYPVFERGISHPKPSEELDSIVE 124
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BLAST of jgi.p|Trimin1|66468 vs. uniprot
Match: D8LNR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.870e-9
Identity = 56/168 (33.33%), Postives = 84/168 (50.00%), Query Frame = 1 
Query:  124 DSLSDEDVARLNDVRKQVWK--------GGALGLVNGSVLGFIASRLGARYSP-----ALRKLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTR----GATDQVKTEYQEKAVEAGGGWRAQQQNMEDAMRESHARRMRALELHRQS--RDNGATFESDR 570
            + LSDEDV RLN+VRKQ+W         GGA GL N  +   + ++    +       +L  L   +Y M C + +GA G FLGA + G +    + DI+ R    G T+Q +T     A+ +     A + ++  A  +SHARRM A+ L RQ    +   TF+S +
Sbjct:   53 EDLSDEDVNRLNNVRKQIWAAGYTGFFLGGAWGLANCVIYKALQAKAVEHFPKQSAIKSLPVLQNKHYVM-CTLVAGATGMFLGAGMGGIRGNEDLRDIYDRRTGGGLTEQQET----PALPSHLPRDAPEHHVAKASADSHARRMEAIRLKRQQDKAERDGTFKSGK 215
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BLAST of jgi.p|Trimin1|66468 vs. uniprot
Match: A0A7S2S5E0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5E0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.290e-5
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  112 YLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGF----IASRLGARYSPALR-KLS---------TTNYTMLCVMASGALGSFLGATVSGK 354
            +LPP+SLS ED+  + DVR+ VWK G  GL+ G+V G+    ++  + +R S A + KL+         T N   L VM   +L SF  A+ +GK
Sbjct:    5 FLPPESLSKEDIRVIADVRRDVWKSGMSGLLIGAVSGYFIHSVSKIIYSRLSDASKLKLTIPGENPIRFTRNTAFLSVMLGSSLTSFAFASAAGK 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|66468 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CCN6_9STRA8.230e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GKJ3_9STRA6.740e-1644.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2KDW0_9STRA1.360e-1037.29Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D8LNR6_ECTSI3.870e-933.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2S5E0_9STRA4.290e-537.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:33140..34343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|66468|CE66467_86
Max annot lvl2836|Bacillariophyta
EggNOG OGs2BW49@1|root,2QYDN@2759|Eukaryota,2XG1H@2836|Bacillariophyta
Evalue4.66e-05
Seed ortholog35128.Thaps25506
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006110.1
TranscriptId66790
TrackFilteredModels1
ProteinId66468
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66468gene_5598Tribonema minus UTEX_B_3156 geneContig_42 33140..34343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66468Trimin1|66468|CE66467_86Tribonema minus UTEX_B_3156 polypeptideContig_42 33277..34114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5598_3exon_5598_3Tribonema minus UTEX_B_3156 exonContig_42 33140..33690 -
exon_5598_2exon_5598_2Tribonema minus UTEX_B_3156 exonContig_42 34049..34146 -
exon_5598_1exon_5598_1Tribonema minus UTEX_B_3156 exonContig_42 34280..34343 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5598UTR3_5598Tribonema minus UTEX_B_3156 three_prime_UTRContig_42 33140..33276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5598CDS_5598Tribonema minus UTEX_B_3156 CDSContig_42 34049..34114 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5598UTR5_5598Tribonema minus UTEX_B_3156 five_prime_UTRContig_42 34280..34343 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5598 ID=mRNA_5598|Name=jgi.p|Trimin1|66468|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=713bp|location=Sequence derived from alignment at Contig_42:33140..34343- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTTGCACTGCACTGTGATCAGCTGAGACTAGGCAAGGTGCTTCAGGACG
CAAAGGATCTGCAGGAAAGGAGCCATTGCTCGCGTGCAGGTGGACGATGG
CGAAGCCCAAGTACCTGCCGCCTGATTCACTCAGCGACGAAGATGTTGCA
CGCCTCAATGATGTGCGGAAGCAGGTCTGGAAGGGAGGAGCTCTGGGTCT
TGTGAATGGTAGCGTTCTCGGTTTTATTGCCTCGCGGCTAGGCGCCCGCT
ACAGTCCTGCACTAAGAAAGCTTTCCACCACAAATTACACAATGCTGTGC
GTCATGGCATCTGGCGCACTGGGGTCCTTTCTCGGTGCAACCGTCAGCGG
CAAAAAGAGCGTTGTGTACATAGGCGACATTTTCACACGTGGCGCCACAG
ATCAGGTCAAGACAGAGTACCAAGAAAAGGCTGTAGAGGCGGGGGGCGGT
TGGAGGGCGCAGCAGCAGAACATGGAAGACGCAATGAGGGAGAGTCACGC
GCGTCGGATGCGTGCTTTGGAACTGCATCGGCAGAGCAGAGACAATGGAG
CTACGTTCGAGAGCGACAGGAAGTAAACGTGAAGCTGCAGTGATGCACTG
CTCCTGCCTATGCATACACACTGCTCAATGCTGATGTTCAGCACAGGTGC
ACACGGTTTGTCAGGTGCAAGGGTCAGGGTCAGGGTAAGGGTCAAGTTGC
AGTCAAAGTGCGT
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protein sequence of jgi.p|Trimin1|66468

>Trimin1|66468|CE66467_86 ID=Trimin1|66468|CE66467_86|Name=jgi.p|Trimin1|66468|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
MAKPKYLPPDSLSDEDVARLNDVRKQVWKGGALGLVNGSVLGFIASRLGA
RYSPALRKLSTTNYTMLCVMASGALGSFLGATVSGKKSVVYIGDIFTRGA
TDQVKTEYQEKAVEAGGGWRAQQQNMEDAMRESHARRMRALELHRQSRDN
GATFESDRK*
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mRNA from alignment at Contig_42:33140..34343-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5598 ID=mRNA_5598|Name=jgi.p|Trimin1|66468|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1204bp|location=Sequence derived from alignment at Contig_42:33140..34343- (Tribonema minus UTEX_B_3156 )
GCTTGCACTGCACTGTGATCAGCTGAGACTAGGCAAGGTGCTTCAGGACG
CAAAGGATCTGCAGGTATGTTGCTGCATGTAGAGCATTTGGCATTCTTTC
GGTTGCGGGTGTGCTCAGGAGTGAGAATTTGCATATTGCCTTTTTCCTCG
AGCACGACGGAAAAACTGAGCGATGTGTTGCAATTGCTGCTTCGCAGGAA
AGGAGCCATTGCTCGCGTGCAGGTGGACGATGGCGAAGCCCAAGTACCTG
CCGCCTGATTCACTCAGCGACGAAGATGTTGCACGCCTCAATGATGTAAG
TGGCCTGCAATGACGCTCAAGACATGTACTAAGCACACGTGCTGTTGATC
ATCATGTTCTTGAAAGTTGTCTTCATGCTGTTTAGTTTGTGGCCATGAAT
CTTTTTTGCAGTTCGGTACTCTAAACTCGTTGAATCCGTGGAGCCTCGCT
ACTTCACAAGGCGCATGCTGCATCGGGCTAACAAAGTGTGTACCCTTCCC
ATTCATCTCCTACTTCATTGTGCCGGAAAGCTGCAGCAGCGTGCTACTTT
GCAAAAGCCTGAATCAGGTTGCTTGCACAGTGCCCTGTCTGTATAGTGGT
GATTATCATTATATTCTCTTGCACACGGTGCCTGCTCTTCCCACGCTTGC
CAGGTGCGGAAGCAGGTCTGGAAGGGAGGAGCTCTGGGTCTTGTGAATGG
TAGCGTTCTCGGTTTTATTGCCTCGCGGCTAGGCGCCCGCTACAGTCCTG
CACTAAGAAAGCTTTCCACCACAAATTACACAATGCTGTGCGTCATGGCA
TCTGGCGCACTGGGGTCCTTTCTCGGTGCAACCGTCAGCGGCAAAAAGAG
CGTTGTGTACATAGGCGACATTTTCACACGTGGCGCCACAGATCAGGTCA
AGACAGAGTACCAAGAAAAGGCTGTAGAGGCGGGGGGCGGTTGGAGGGCG
CAGCAGCAGAACATGGAAGACGCAATGAGGGAGAGTCACGCGCGTCGGAT
GCGTGCTTTGGAACTGCATCGGCAGAGCAGAGACAATGGAGCTACGTTCG
AGAGCGACAGGAAGTAAACGTGAAGCTGCAGTGATGCACTGCTCCTGCCT
ATGCATACACACTGCTCAATGCTGATGTTCAGCACAGGTGCACACGGTTT
GTCAGGTGCAAGGGTCAGGGTCAGGGTAAGGGTCAAGTTGCAGTCAAAGT
GCGT
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Coding sequence (CDS) from alignment at Contig_42:33140..34343-

>mRNA_5598 ID=mRNA_5598|Name=jgi.p|Trimin1|66468|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_42:33140..34343- (Tribonema minus UTEX_B_3156 )
ATGGCGAAGCCCAAGTACCTGCCGCCTGATTCACTCAGCGACGAAGATGT
TGCACGCCTCAATGATGTGCGGAAGCAGGTCTGGAAGGGAGGAGCTCTGG
GTCTTGTGAATGGTAGCGTTCTCGGTTTTATTGCCTCGCGGCTAGGCGCC
CGCTACAGTCCTGCACTAAGAAAGCTTTCCACCACAAATTACACAATGCT
GTGCGTCATGGCATCTGGCGCACTGGGGTCCTTTCTCGGTGCAACCGTCA
GCGGCAAAAAGAGCGTTGTGTACATAGGCGACATTTTCACACGTGGCGCC
ACAGATCAGGTCAAGACAGAGTACCAAGAAAAGGCTGTAGAGGCGGGGGG
CGGTTGGAGGGCGCAGCAGCAGAACATGGAAGACGCAATGAGGGAGAGTC
ACGCGCGTCGGATGCGTGCTTTGGAACTGCATCGGCAGAGCAGAGACAAT
GGAGCTACGTTCGAGAGCGACAGGAAGTAA
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