mRNA_5568 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A835Z5P8_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P8_9STRA) HSP 1 Score: 551 bits (1419), Expect = 2.370e-198 Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1 Query: 1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP 810 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP Sbjct: 1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP 270
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S2SV46_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV46_9STRA) HSP 1 Score: 209 bits (531), Expect = 2.430e-62 Identity = 130/343 (37.90%), Postives = 171/343 (49.85%), Query Frame = 1 Query: 10 ESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQS---------------------------------------------------------------------TTDGGGVTAQQSQQPGT----------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDD----GVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMP 771 + + DELLM++A +LG I+ LL T FSFLHRKTDFYV++DP + R MGF +G +E++LL+ F+S T ++Q GT KQ P+GNGG Y WTQTL EVTVY+ VP+GTR D++C I + L KLK ++P T + S+W ++ D G +V+TL+K+ KTWW + G P ID + VDSTCK+ +YD +TQ AIRKIMFDQKQK +GLPTSDELT +LEKAK PGSPF+P Sbjct: 10 QDQSDELLMSLASKLGGIEPLLGTFFSFLHRKTDFYVQYDPKSVPQAR--MGFPAGVSEKMLLRKFRSFPTKDYAAEVARLEEAQGLRRPAGPKLRPSSEARRAAQKVPVAPSEPMEVAAXXXXXXXXXXXXXXARTVTGPDASSSQAGPAAGTPAPKMPFPEVKYTDKGKQVPIGNGGVT--SRYTWTQTLYEVTVYIPVPQGTRAADILCTIAPKKLQLKLKKEPEWILDGDMPET-VRPDESMWVVEDDPAGDFGTVVITLDKIKKTWWDVVVVGDPAIDATMVDSTCKIDEYDPETQGAIRKIMFDQKQKSLGLPTSDELTTEAILEKAKYMPGSPFLP 347
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S3XL32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL32_HETAK) HSP 1 Score: 204 bits (518), Expect = 2.610e-60 Identity = 135/347 (38.90%), Postives = 165/347 (47.55%), Query Frame = 1 Query: 19 YDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAF--------------------------------------------------------------------QSTTDGGGVTAQQ------------------SQQPGTK--------QTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGG 777 YD +L+ +AGQ G I LL FSFLHRKTDFYV + MGF +G AE++LLQ+F Q DG A S PG + Q P+GNGG Y WTQTL EVT+YVD+P GTR +D+ +I S+ KLK E P TA A+ S+W L+ D+ LV+TLEKV +TWW ++G PEID KVDST KV DYDE+TQA IRKIMFDQKQK +GLPTS+EL +LE+AK A GSPF+PGG Sbjct: 9 YDNVLLGLAGQCGGIQPLLAAFFSFLHRKTDFYVVHADD---DNQAKMGFRAGAAEKILLQSFRKFPYKPMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADKAAPVQHEPDDINDSQEQKKPDGPSAAAAHENAGDQLQRGTAPAPVPASSGPGLEVRYTDEGLQIPIGNGGIT--ENYYWTQTLGEVTLYVDIPAGTRAKDLQVEISPSSIKIKLKAESEAIIEGEFPHTANASE-SMWTLE-DNRTLVITLEKVTQTWWRSVIKGDPEIDAQKVDSTTKVEDYDEETQATIRKIMFDQKQKALGLPTSEELKMQGILEQAKYAKGSPFLPGG 348
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S3H6E3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6E3_9STRA) HSP 1 Score: 197 bits (500), Expect = 4.820e-58 Identity = 121/316 (38.29%), Postives = 159/316 (50.32%), Query Frame = 1 Query: 1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQS--TTDGGGVTAQQSQQPGT-------------------------------------------------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNL----DSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765 M D+ +D++L +A + G I LL T FSFL RKTDFYV++D MGF G AE+++LQAF+ D V Q +QP T KQ P+GNGG Y WTQTL++VTVY+D G RG+D+ CDI ++L ++G + E + + S+W + DS +V+TLEK TWW + GH EIDT+KVDST +G+YD++TQAAIRKIMFDQKQK +G PTS+E LL KA L PGSP Sbjct: 13 MEDQQAFDDMLTHIASKAGGIKPLLDTFFSFLERKTDFYVQFDQPAAGKASYKMGFPKGVAEKMVLQAFRQYKLQDYETVMGNQKEQPATLPSPPQTPSKPTASEHLTPAAPSTPPKMSSGSXXXXXXXXXXXXXXXXXXYTPDGKQYPIGNGGI--GENYYWTQTLRDVTVYIDTAAGCRGKDVKCDIKAQALKVAIRGEVVVDGALE---GVVKTQESMWTISTTTDSAIQQIVITLEKTRPTWWKHVISGHEEIDTTKVDSTQNIGEYDDNTQAAIRKIMFDQKQKLLGQPTSEESAMDALLAKASLVPGSPI 323
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A8K1C5K9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K9_PYTOL) HSP 1 Score: 194 bits (493), Expect = 1.630e-57 Identity = 118/283 (41.70%), Postives = 164/283 (57.95%), Query Frame = 1 Query: 16 RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ----------STTDGGGVTAQQSQQPGT-----------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAG-----GQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765 R+DEL +T+A Q GSI+GLL + F FLHRKTDFYV DP AS MGF+ G+A++++L A + V Q + P + KQ PVGNGG Y WTQTL +V+++VD+P GTR RD+ C I + + LK G ++P + A S+W+++S L ++LEK+ KTWWA AL G EIDTS+VDST ++ +YD+ TQAAIRK MFDQ+Q++ GLPTSD++ +LL +A+ AP +P Sbjct: 7 RFDELFLTLAQQNGSIEGLLDSFFDFLHRKTDFYVVSHDPG--ASR---MGFLPGQAQQMVLAAMNKYPLKQIDPTAARPSAPVAKQAVKAPVSTPPPVKSTPLVALNAEGKQLPVGNGGVTDK--YTWTQTLDDVSIHVDLPTGTRSRDIDCQIRAQHVRVALKRPSERNDDGVLLEGDLP-DKIRADESIWSIESSTSTLQISLEKIKKTWWASALVGDAEIDTSQVDSTRQIHEYDDATQAAIRKAMFDQQQQQRGLPTSDQMQMQNLLAQARNAPNAPI 281
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7R9U371_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U371_9STRA) HSP 1 Score: 195 bits (495), Expect = 4.430e-57 Identity = 124/348 (35.63%), Postives = 176/348 (50.57%), Query Frame = 1 Query: 1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTT------------------------------------------------------------------DG--GGVTAQQSQQPGTK---------------QTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAP 795 MAD SR+D++ +++A Q I+G+LR +F FLHR+TDFYV + L++ MGF G+AE +LL+ F+S DG G + ++S+ P TK Q PV NGGA Y W+QTL E T++V +P+G R RD+ +I L+ + K + + P + S+W +D+ G+L ++L+K + WW+ AL G EIDT++VDS K+ DYD++TQ IRKIMFDQKQK +GLPTSDEL +L E+AK APGSPF+PGGP A+ P Sbjct: 1 MADFSRFDDVFLSLASQSDGIEGMLRIVFDFLHRRTDFYVVKEARDLSAR---MGFNDGEAERILLRTFKSFAFKPLSAAQQKTVRKKKNKIAKRSSEAAKSKAPSPVAASPQEAAASHTATVEDELPGPTEHQSVPKMDGAAGALEERESKDPATKPEEVRPSLKVNEDGKQIPVNNGGATDK--YVWSQTLGEATMHVPLPEGMRARDIRVEILPSGLTVRKKADDDVILAGQWP-RRIQGDESVWTVDN--GILTISLDKADRAWWSSALVGDVEIDTTQVDSRTKIDDYDDETQGVIRKIMFDQKQKALGLPTSDELEKQELFERAKFAPGSPFLPGGPFAEKP 340
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A5D6XYI4_9STRA (CS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYI4_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.390e-53 Identity = 109/254 (42.91%), Postives = 146/254 (57.48%), Query Frame = 1 Query: 16 RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFY-VEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQA---SKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765 R+D L T+A Q ++ LL + F F+HRKTDFY V DPA R MGF+ G A++ +A T+ G KQ PVGNGGA Y WTQ+L E T+ + VP TR RD+ C I + + K A + +P + LW+L+ + L ++LEK+ +TWWA AL+GH EIDTS+VDST + +YD +TQ AIRKIMFDQ+Q++ GLPTSDE+ LL A+ AP SP Sbjct: 5 RFDALFATLAQQHDGVEALLDSFFDFMHRKTDFYAVSRDPA-----RRKMGFLPGHAQQ---KARVKRTESG------------KQIPVGNGGATAS--YTWTQSLDETTINLRVPPNTRSRDLECKITSTYVRVTRKNAPLDEPPLLEGALP-DKVRVDECLWSLERESTTLQISLEKLKRTWWASALQGHDEIDTSQVDSTRAIHEYDGETQGAIRKIMFDQQQQQSGLPTSDEMLQESLLAHARRAPDSPI 235
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A2P4XCQ1_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XCQ1_9STRA) HSP 1 Score: 181 bits (460), Expect = 2.110e-52 Identity = 118/303 (38.94%), Postives = 169/303 (55.78%), Query Frame = 1 Query: 1 MADES------RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ---------STTDGGGVTAQQSQQPGT---------------------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASK-EIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRM--GLPTSDELTASDLLEKAKLAPGSPFMP 771 MAD++ R+D LL +A Q G ++ LL + F FLHRKTDFYV DPA R MGF+ G+A++ +L+AFQ S+ +G S P T KQ PVGNGG GY WTQTL++V++ ++V +GTR +D+ C I + L LK + + E P + A S+W+L+S+ L ++LEK+ TWWA AL+G PEIDTS+VDS + +YDE TQ AIRK ++DQ+Q+++ G+P + E +L++AK PGSPF+P Sbjct: 1 MADQAMSAAPGRFDALLTQLAQQHGGVESLLDSFFDFLHRKTDFYVVSSDPA-----RHNMGFMPGQAQQKVLKAFQKYPLKSLDGSSVNGAAKVTTSSTAPVTASTQQNRAMDRAPVAKEEANPQLTEDGKQVPVGNGGVA--DGYTWTQTLEDVSIQMEVAQGTRAKDLKCQIESTKLHVALKSDPTKPLLEGEFP-EKIRADESIWSLESNH-TLNISLEKIKPTWWASALKGGPEIDTSQVDSRRNIQEYDEATQGAIRKAVYDQRQQQLNGGVPLTPE---EQMLQEAKYLPGSPFLP 291
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A6H5JZ97_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ97_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.610e-51 Identity = 96/195 (49.23%), Postives = 125/195 (64.10%), Query Frame = 1 Query: 265 KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAG-----------------GQQASKEIPF-----TALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPL 783 KQ P+GNGG Y WTQT+ E TVYVDVP GTR +D+ C I R L K++GAG ++++ F +A++ S+W+L+ D +V++ EK K+WW +EG PEIDTSKVDST K+ +YD +TQ AIRKIMFDQ+QK +GLPTSDEL A LLE+AK+ PGSPF+PGG L Sbjct: 200 KQVPIGNGGVT--DRYYWTQTVNEATVYVDVPPGTRSKDVTCIIQPRWLKLKVRGAGTAXXXXXXXXXXXXXXXXXXGAEDVVFDGELPSAVSREDSMWSLN-DGKTVVISFEKTTKSWWKSVVEGDPEIDTSKVDSTTKISEYDGETQGAIRKIMFDQRQKSLGLPTSDELNADALLERAKVLPGSPFLPGGVL 391
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A833VXU8_PHYIN (CS domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VXU8_PHYIN) HSP 1 Score: 177 bits (449), Expect = 8.380e-51 Identity = 115/289 (39.79%), Postives = 163/289 (56.40%), Query Frame = 1 Query: 1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ---------------------STTDG-----GGVTAQQSQQPGT----KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRM-GLPTSDELTASDLLEKAKLAPGSPFMP 771 MAD R+D LL MA Q G ++ LL + F FLHRKTDFYV DPA + MGF+ G+A++ +L AFQ S TD A++ +P KQ PVGNGG + Y WTQTL++V++ ++V +GTR + + C I L LK + + F + A S+W+L+ + L ++LEK+ TWWA AL+G PEIDTS+VDS + +YD+ TQ AIRK +FDQ+Q+++ G+P + E +LE+AK PGSPF+P Sbjct: 10 MAD--RFDALLAQMAQQHGGVEPLLESFFGFLHRKTDFYVVSSDPA-----KAKMGFLPGQAQQKVLAAFQKYPMKNLSGNAEAATSTVLSASKTDSTRNRSASAAAKEKIKPQLTEDGKQVPVGNGGVADN--YTWTQTLEDVSIQMEVAQGTRAKALNCQIEATKLRVSLKSDPTRPFLEGEFFDKIRADESIWSLEGNH-TLNISLEKIKPTWWASALKGGPEIDTSQVDSRRNIQEYDDVTQGAIRKAVFDQRQQQLNGVPLTPE---EQMLEEAKSLPGSPFLP 285 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGGACGAAAGCAGATACGACGAACTCCTGATGACCATGGCGGGGCAback to top protein sequence of jgi.p|Trimin1|162012 >Trimin1|162012|e_gw1.19.163.1 ID=Trimin1|162012|e_gw1.19.163.1|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASEback to top mRNA from alignment at Contig_19:1095800..1097379- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1580bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:1095800..1097379- >mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )back to top |