mRNA_5568 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162012
Unique NamemRNA_5568
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A835Z5P8_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P8_9STRA)

HSP 1 Score: 551 bits (1419), Expect = 2.370e-198
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 1
Query:    1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP 810
            MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP
Sbjct:    1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAPGGNHP 270          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S2SV46_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV46_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.430e-62
Identity = 130/343 (37.90%), Postives = 171/343 (49.85%), Query Frame = 1
Query:   10 ESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQS---------------------------------------------------------------------TTDGGGVTAQQSQQPGT----------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDD----GVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMP 771
            + + DELLM++A +LG I+ LL T FSFLHRKTDFYV++DP  +   R  MGF +G +E++LL+ F+S                                                                      T     ++Q     GT                KQ P+GNGG      Y WTQTL EVTVY+ VP+GTR  D++C I  + L  KLK         ++P T +    S+W ++ D     G +V+TL+K+ KTWW   + G P ID + VDSTCK+ +YD +TQ AIRKIMFDQKQK +GLPTSDELT   +LEKAK  PGSPF+P
Sbjct:   10 QDQSDELLMSLASKLGGIEPLLGTFFSFLHRKTDFYVQYDPKSVPQAR--MGFPAGVSEKMLLRKFRSFPTKDYAAEVARLEEAQGLRRPAGPKLRPSSEARRAAQKVPVAPSEPMEVAAXXXXXXXXXXXXXXARTVTGPDASSSQAGPAAGTPAPKMPFPEVKYTDKGKQVPIGNGGVT--SRYTWTQTLYEVTVYIPVPQGTRAADILCTIAPKKLQLKLKKEPEWILDGDMPET-VRPDESMWVVEDDPAGDFGTVVITLDKIKKTWWDVVVVGDPAIDATMVDSTCKIDEYDPETQGAIRKIMFDQKQKSLGLPTSDELTTEAILEKAKYMPGSPFLP 347          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S3XL32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL32_HETAK)

HSP 1 Score: 204 bits (518), Expect = 2.610e-60
Identity = 135/347 (38.90%), Postives = 165/347 (47.55%), Query Frame = 1
Query:   19 YDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAF--------------------------------------------------------------------QSTTDGGGVTAQQ------------------SQQPGTK--------QTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGG 777
            YD +L+ +AGQ G I  LL   FSFLHRKTDFYV          +  MGF +G AE++LLQ+F                                                                    Q   DG    A                    S  PG +        Q P+GNGG      Y WTQTL EVT+YVD+P GTR +D+  +I   S+  KLK         E P TA A+  S+W L+ D+  LV+TLEKV +TWW   ++G PEID  KVDST KV DYDE+TQA IRKIMFDQKQK +GLPTS+EL    +LE+AK A GSPF+PGG
Sbjct:    9 YDNVLLGLAGQCGGIQPLLAAFFSFLHRKTDFYVVHADD---DNQAKMGFRAGAAEKILLQSFRKFPYKPMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADKAAPVQHEPDDINDSQEQKKPDGPSAAAAHENAGDQLQRGTAPAPVPASSGPGLEVRYTDEGLQIPIGNGGIT--ENYYWTQTLGEVTLYVDIPAGTRAKDLQVEISPSSIKIKLKAESEAIIEGEFPHTANASE-SMWTLE-DNRTLVITLEKVTQTWWRSVIKGDPEIDAQKVDSTTKVEDYDEETQATIRKIMFDQKQKALGLPTSEELKMQGILEQAKYAKGSPFLPGG 348          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7S3H6E3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6E3_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.820e-58
Identity = 121/316 (38.29%), Postives = 159/316 (50.32%), Query Frame = 1
Query:    1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQS--TTDGGGVTAQQSQQPGT-------------------------------------------------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNL----DSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765
            M D+  +D++L  +A + G I  LL T FSFL RKTDFYV++D          MGF  G AE+++LQAF+     D   V   Q +QP T                                                       KQ P+GNGG      Y WTQTL++VTVY+D   G RG+D+ CDI  ++L   ++G      + E     +  + S+W +    DS    +V+TLEK   TWW   + GH EIDT+KVDST  +G+YD++TQAAIRKIMFDQKQK +G PTS+E     LL KA L PGSP 
Sbjct:   13 MEDQQAFDDMLTHIASKAGGIKPLLDTFFSFLERKTDFYVQFDQPAAGKASYKMGFPKGVAEKMVLQAFRQYKLQDYETVMGNQKEQPATLPSPPQTPSKPTASEHLTPAAPSTPPKMSSGSXXXXXXXXXXXXXXXXXXYTPDGKQYPIGNGGI--GENYYWTQTLRDVTVYIDTAAGCRGKDVKCDIKAQALKVAIRGEVVVDGALE---GVVKTQESMWTISTTTDSAIQQIVITLEKTRPTWWKHVISGHEEIDTTKVDSTQNIGEYDDNTQAAIRKIMFDQKQKLLGQPTSEESAMDALLAKASLVPGSPI 323          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A8K1C5K9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K9_PYTOL)

HSP 1 Score: 194 bits (493), Expect = 1.630e-57
Identity = 118/283 (41.70%), Postives = 164/283 (57.95%), Query Frame = 1
Query:   16 RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ----------STTDGGGVTAQQSQQPGT-----------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAG-----GQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765
            R+DEL +T+A Q GSI+GLL + F FLHRKTDFYV   DP   AS    MGF+ G+A++++L A            +      V  Q  + P +                 KQ PVGNGG      Y WTQTL +V+++VD+P GTR RD+ C I  + +   LK        G     ++P   + A  S+W+++S    L ++LEK+ KTWWA AL G  EIDTS+VDST ++ +YD+ TQAAIRK MFDQ+Q++ GLPTSD++   +LL +A+ AP +P 
Sbjct:    7 RFDELFLTLAQQNGSIEGLLDSFFDFLHRKTDFYVVSHDPG--ASR---MGFLPGQAQQMVLAAMNKYPLKQIDPTAARPSAPVAKQAVKAPVSTPPPVKSTPLVALNAEGKQLPVGNGGVTDK--YTWTQTLDDVSIHVDLPTGTRSRDIDCQIRAQHVRVALKRPSERNDDGVLLEGDLP-DKIRADESIWSIESSTSTLQISLEKIKKTWWASALVGDAEIDTSQVDSTRQIHEYDDATQAAIRKAMFDQQQQQRGLPTSDQMQMQNLLAQARNAPNAPI 281          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A7R9U371_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U371_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.430e-57
Identity = 124/348 (35.63%), Postives = 176/348 (50.57%), Query Frame = 1
Query:    1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQSTT------------------------------------------------------------------DG--GGVTAQQSQQPGTK---------------QTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPLADAP 795
            MAD SR+D++ +++A Q   I+G+LR +F FLHR+TDFYV  +   L++    MGF  G+AE +LL+ F+S                                                                    DG  G +  ++S+ P TK               Q PV NGGA     Y W+QTL E T++V +P+G R RD+  +I    L+ + K       + + P   +    S+W +D+  G+L ++L+K  + WW+ AL G  EIDT++VDS  K+ DYD++TQ  IRKIMFDQKQK +GLPTSDEL   +L E+AK APGSPF+PGGP A+ P
Sbjct:    1 MADFSRFDDVFLSLASQSDGIEGMLRIVFDFLHRRTDFYVVKEARDLSAR---MGFNDGEAERILLRTFKSFAFKPLSAAQQKTVRKKKNKIAKRSSEAAKSKAPSPVAASPQEAAASHTATVEDELPGPTEHQSVPKMDGAAGALEERESKDPATKPEEVRPSLKVNEDGKQIPVNNGGATDK--YVWSQTLGEATMHVPLPEGMRARDIRVEILPSGLTVRKKADDDVILAGQWP-RRIQGDESVWTVDN--GILTISLDKADRAWWSSALVGDVEIDTTQVDSRTKIDDYDDETQGVIRKIMFDQKQKALGLPTSDELEKQELFERAKFAPGSPFLPGGPFAEKP 340          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A5D6XYI4_9STRA (CS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYI4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.390e-53
Identity = 109/254 (42.91%), Postives = 146/254 (57.48%), Query Frame = 1
Query:   16 RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFY-VEWDPALLASERPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQA---SKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 765
            R+D L  T+A Q   ++ LL + F F+HRKTDFY V  DPA     R  MGF+ G A++   +A    T+ G            KQ PVGNGGA     Y WTQ+L E T+ + VP  TR RD+ C I +  +    K A   +       +P   +     LW+L+ +   L ++LEK+ +TWWA AL+GH EIDTS+VDST  + +YD +TQ AIRKIMFDQ+Q++ GLPTSDE+    LL  A+ AP SP 
Sbjct:    5 RFDALFATLAQQHDGVEALLDSFFDFMHRKTDFYAVSRDPA-----RRKMGFLPGHAQQ---KARVKRTESG------------KQIPVGNGGATAS--YTWTQSLDETTINLRVPPNTRSRDLECKITSTYVRVTRKNAPLDEPPLLEGALP-DKVRVDECLWSLERESTTLQISLEKLKRTWWASALQGHDEIDTSQVDSTRAIHEYDGETQGAIRKIMFDQQQQQSGLPTSDEMLQESLLAHARRAPDSPI 235          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A2P4XCQ1_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XCQ1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.110e-52
Identity = 118/303 (38.94%), Postives = 169/303 (55.78%), Query Frame = 1
Query:    1 MADES------RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ---------STTDGGGVTAQQSQQPGT---------------------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASK-EIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRM--GLPTSDELTASDLLEKAKLAPGSPFMP 771
            MAD++      R+D LL  +A Q G ++ LL + F FLHRKTDFYV   DPA     R  MGF+ G+A++ +L+AFQ         S+ +G       S  P T                           KQ PVGNGG     GY WTQTL++V++ ++V +GTR +D+ C I +  L   LK    +   + E P   + A  S+W+L+S+   L ++LEK+  TWWA AL+G PEIDTS+VDS   + +YDE TQ AIRK ++DQ+Q+++  G+P + E     +L++AK  PGSPF+P
Sbjct:    1 MADQAMSAAPGRFDALLTQLAQQHGGVESLLDSFFDFLHRKTDFYVVSSDPA-----RHNMGFMPGQAQQKVLKAFQKYPLKSLDGSSVNGAAKVTTSSTAPVTASTQQNRAMDRAPVAKEEANPQLTEDGKQVPVGNGGVA--DGYTWTQTLEDVSIQMEVAQGTRAKDLKCQIESTKLHVALKSDPTKPLLEGEFP-EKIRADESIWSLESNH-TLNISLEKIKPTWWASALKGGPEIDTSQVDSRRNIQEYDEATQGAIRKAVYDQRQQQLNGGVPLTPE---EQMLQEAKYLPGSPFLP 291          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A6H5JZ97_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ97_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.610e-51
Identity = 96/195 (49.23%), Postives = 125/195 (64.10%), Query Frame = 1
Query:  265 KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAG-----------------GQQASKEIPF-----TALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPL 783
            KQ P+GNGG      Y WTQT+ E TVYVDVP GTR +D+ C I  R L  K++GAG                     ++++ F     +A++   S+W+L+ D   +V++ EK  K+WW   +EG PEIDTSKVDST K+ +YD +TQ AIRKIMFDQ+QK +GLPTSDEL A  LLE+AK+ PGSPF+PGG L
Sbjct:  200 KQVPIGNGGVT--DRYYWTQTVNEATVYVDVPPGTRSKDVTCIIQPRWLKLKVRGAGTAXXXXXXXXXXXXXXXXXXGAEDVVFDGELPSAVSREDSMWSLN-DGKTVVISFEKTTKSWWKSVVEGDPEIDTSKVDSTTKISEYDGETQGAIRKIMFDQRQKSLGLPTSDELNADALLERAKVLPGSPFLPGGVL 391          
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Match: A0A833VXU8_PHYIN (CS domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VXU8_PHYIN)

HSP 1 Score: 177 bits (449), Expect = 8.380e-51
Identity = 115/289 (39.79%), Postives = 163/289 (56.40%), Query Frame = 1
Query:    1 MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYV-EWDPALLASERPTMGFVSGKAEELLLQAFQ---------------------STTDG-----GGVTAQQSQQPGT----KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASKEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRM-GLPTSDELTASDLLEKAKLAPGSPFMP 771
            MAD  R+D LL  MA Q G ++ LL + F FLHRKTDFYV   DPA     +  MGF+ G+A++ +L AFQ                     S TD          A++  +P      KQ PVGNGG   +  Y WTQTL++V++ ++V +GTR + + C I    L   LK    +   +   F  + A  S+W+L+ +   L ++LEK+  TWWA AL+G PEIDTS+VDS   + +YD+ TQ AIRK +FDQ+Q+++ G+P + E     +LE+AK  PGSPF+P
Sbjct:   10 MAD--RFDALLAQMAQQHGGVEPLLESFFGFLHRKTDFYVVSSDPA-----KAKMGFLPGQAQQKVLAAFQKYPMKNLSGNAEAATSTVLSASKTDSTRNRSASAAAKEKIKPQLTEDGKQVPVGNGGVADN--YTWTQTLEDVSIQMEVAQGTRAKALNCQIEATKLRVSLKSDPTRPFLEGEFFDKIRADESIWSLEGNH-TLNISLEKIKPTWWASALKGGPEIDTSQVDSRRNIQEYDDVTQGAIRKAVFDQRQQQLNGVPLTPE---EQMLEEAKSLPGSPFLP 285          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162012 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5P8_9STRA2.370e-198100.00Nuclear migration protein nudC-like protein n=1 Ta... [more]
A0A7S2SV46_9STRA2.430e-6237.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XL32_HETAK2.610e-6038.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H6E3_9STRA4.820e-5838.29Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A8K1C5K9_PYTOL1.630e-5741.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9U371_9STRA4.430e-5735.63Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A5D6XYI4_9STRA5.390e-5342.91CS domain-containing protein n=1 Tax=Pythium brass... [more]
A0A2P4XCQ1_9STRA2.110e-5238.94Nuclear migration protein nudC-like protein n=1 Ta... [more]
A0A6H5JZ97_9PHAE1.610e-5149.23CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A833VXU8_PHYIN8.380e-5139.79CS domain-containing protein n=2 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:1095800..1097379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162012|e_gw1.19.163.1
KEGG TC1.A.1.4
BRITEko00000,ko02000
KEGG koko:K21867
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005868,GO:0005875,GO:0006457,GO:0006810,GO:0006996,GO:0007097,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0046907,GO:0051082,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0060271,GO:0070727,GO:0070925,GO:0071539,GO:0071840,GO:0072698,GO:0120031,GO:0120036,GO:1902494,GO:1905508,GO:1905793
Preferred nameNUDCD3
Descriptionunfolded protein binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2265@1|root,KOG2265@2759|Eukaryota
Evalue6.57e-60
Seed ortholog2880.D8LL35
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-26_003380.1
TranscriptId162334
TrackFilteredModels1
ProteinId162012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162012gene_5568Tribonema minus UTEX_B_3156 geneContig_19 1095800..1097379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162012Trimin1|162012|e_gw1.19.163.1Tribonema minus UTEX_B_3156 polypeptideContig_19 1095800..1097379 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5568_4exon_5568_4Tribonema minus UTEX_B_3156 exonContig_19 1095800..1095967 -
exon_5568_3exon_5568_3Tribonema minus UTEX_B_3156 exonContig_19 1096173..1096333 -
exon_5568_2exon_5568_2Tribonema minus UTEX_B_3156 exonContig_19 1096650..1096925 -
exon_5568_1exon_5568_1Tribonema minus UTEX_B_3156 exonContig_19 1097172..1097379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5568CDS_5568Tribonema minus UTEX_B_3156 CDSContig_19 1097172..1097379 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=813bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACGAAAGCAGATACGACGAACTCCTGATGACCATGGCGGGGCA
GCTGGGCAGCATCGATGGACTGTTGCGGACGCTGTTCTCTTTCCTGCACA
GGAAGACGGATTTCTACGTGGAGTGGGATCCTGCCCTGCTTGCCTCGGAG
CGGCCCACCATGGGTTTCGTGAGCGGCAAAGCAGAGGAATTGCTGCTCCA
GGCATTCCAAAGCACCACTGATGGTGGTGGCGTCACTGCACAGCAGTCTC
AGCAGCCTGGCACGAAGCAGACGCCGGTCGGAAATGGTGGTGCTTGCCCT
GATCATGGGTACTGCTGGACGCAGACCCTGCAAGAGGTAACTGTGTACGT
TGATGTGCCCAAAGGCACGCGTGGGCGGGACATGGTGTGTGACATTGGAA
CCAGGAGCTTGAGTTGTAAGCTGAAAGGCGCTGGAGGACAGCAGGCAAGC
AAAGAAATTCCTTTTACGGCACTTGCTGCAAGACGCAGTCTGTGGAATCT
CGACAGCGACGATGGAGTGCTAGTAGTGACATTGGAGAAGGTGGCCAAGA
CCTGGTGGGCCTGTGCCCTTGAGGGTCATCCAGAGATTGACACATCAAAG
GTCGACAGCACCTGTAAAGTCGGTGACTATGATGAAGATACGCAGGCAGC
AATTCGCAAGATCATGTTCGACCAGAAGCAGAAGCGCATGGGCCTGCCGA
CCAGCGATGAGTTGACTGCATCAGACCTGCTCGAAAAGGCCAAGCTTGCA
CCGGGCAGTCCCTTCATGCCAGGTGGCCCACTGGCGGATGCACCTGGCGG
CAACCACCCATGA
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protein sequence of jgi.p|Trimin1|162012

>Trimin1|162012|e_gw1.19.163.1 ID=Trimin1|162012|e_gw1.19.163.1|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
MADESRYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASE
RPTMGFVSGKAEELLLQAFQSTTDGGGVTAQQSQQPGTKQTPVGNGGACP
DHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQAS
KEIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSK
VDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLA
PGSPFMPGGPLADAPGGNHP*
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mRNA from alignment at Contig_19:1095800..1097379-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1580bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )
ATGGCGGACGAAAGCAGATACGACGAACTCCTGATGACCATGGCGGGGCA GCTGGGCAGCATCGATGGACTGTTGCGGACGCTGTTCTCTTTCCTGCACA GGAAGACGGATTTCTACGTGGAGTGGGATCCTGCCCTGCTTGCCTCGGAG CGGCCCACCATGGGTTTCGTGAGCGGCAAAGCAGAGGAATTGCTGCTCCA GGCATTCCGTGCCTATCCTTTCAAGGACTACCGCAGCGCCTGCGCCGCAA GCGCGGGTGCACCTTCACGAAAGCAGCCACAGCAGAAGAGGGAACCATCG TCAGCCAGTTCACAGCAAGTAAAAGCAGCTGCTGCTAGCAAACTTGCTGG CGAAGTTGCAAGTAGAAACCAGAAGGCTCGACCAGCGCAACCGGTGCACA GTCAGGATCAGCCAGATACACCAGCAGCGCTGACACCCGAAGAGCAGTTT GGAGAAAGCACCACTGATGGTGGTGGCGTCACTGCACAGCAGTCTCAGCA GCCTGGCACGAAGCAGACGCCGGTCGGAAATGGTGGTGCTTGCCCTGATC ATGGGTACTGCTGGACGCAGACCCTGCAAGAGGTAACTGTGTACGTTGAT GTGCCCAAAGGCACGCGTGGGCGGGACATGGTGTGTGACATTGGAACCAG GAGCTTGAGTTGTAAGCTGAAAGGCGCTGGAGGACAGCAGGCAAGCAAAG AAATTCCTTTTACGGCACTTGCTGCAAGACGTGGCTGCACACTTGACATG TCGCAAGATGTGCGCTTGACGTGTTACAGAATGTGACTTCATTGAATGCT TGACTGTGTGATCAGCGCAGACCTTGGGGTGCGTAGAATGCGCATGCACC TTGATCACAACAGCATCAGATCTGGCTGTACCTTGTACAGCAAGCGCACT GCTCTTTGAGAGCCATCATGCGCGGTCAGCATGTGAAAGCGACACTGGTT CTCATGTACACATGCTCGGACTGGCTGTCCACTTGTTGCTTGGCTTGAAC CTGCAGCTGCTGGCGGGCCAACTACCAGCATCAGTCAAACGGGAAGGCAG TCTGTGGAATCTCGACAGCGACGATGGAGTGCTAGTAGTGACATTGGAGA AGGTGGCCAAGACCTGGTGGGCCTGTGCCCTTGAGGGTCATCCAGAGATT GACACATCAAAGGTCGACAGCACCTGTAAAGTCGGTGACTATGATGAAGA TACGCAGGTAAGCTCGTTACATCCAGCACTGGAAGGGTGCGTGCTGCTAT GACTGCAATGACGTCAGTGATCAGCAACCAAGAGGAAACTTCAGATGGGT TTCTCATTGCGCAAACGTGGAAACGTGCGCTTACATGCATATACTTTCAG GTGTATTGTTGTGCCAGTCATTGATCCTGCTGCTTTCCGATTTGTTGTCT GCTTGGTCACAGGCAGCAATTCGCAAGATCATGTTCGACCAGAAGCAGAA GCGCATGGGCCTGCCGACCAGCGATGAGTTGACTGCATCAGACCTGCTCG AAAAGGCCAAGCTTGCACCGGGCAGTCCCTTCATGCCAGGTGGCCCACTG GCGGATGCACCTGGCGGCAACCACCCATGA
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Coding sequence (CDS) from alignment at Contig_19:1095800..1097379-

>mRNA_5568 ID=mRNA_5568|Name=jgi.p|Trimin1|162012|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_19:1095800..1097379- (Tribonema minus UTEX_B_3156 )
ATGGCGGACGAAAGCAGATACGACGAACTCCTGATGACCATGGCGGGGCA
GCTGGGCAGCATCGATGGACTGTTGCGGACGCTGTTCTCTTTCCTGCACA
GGAAGACGGATTTCTACGTGGAGTGGGATCCTGCCCTGCTTGCCTCGGAG
CGGCCCACCATGGGTTTCGTGAGCGGCAAAGCAGAGGAATTGCTGCTCCA
GGCATTCCAAAGCACCACTGATGGTGGTGGCGTCACTGCACAGCAGTCTC
AGCAGCCTGGCACGAAGCAGACGCCGGTCGGAAATGGTGGTGCTTGCCCT
GATCATGGGTACTGCTGGACGCAGACCCTGCAAGAGGTAACTGTGTACGT
TGATGTGCCCAAAGGCACGCGTGGGCGGGACATGGTGTGTGACATTGGAA
CCAGGAGCTTGAGTTGTAAGCTGAAAGGCGCTGGAGGACAGCAGGCAAGC
AAAGAAATTCCTTTTACGGCACTTGCTGCAAGACGCAGTCTGTGGAATCT
CGACAGCGACGATGGAGTGCTAGTAGTGACATTGGAGAAGGTGGCCAAGA
CCTGGTGGGCCTGTGCCCTTGAGGGTCATCCAGAGATTGACACATCAAAG
GTCGACAGCACCTGTAAAGTCGGTGACTATGATGAAGATACGCAGGCAGC
AATTCGCAAGATCATGTTCGACCAGAAGCAGAAGCGCATGGGCCTGCCGA
CCAGCGATGAGTTGACTGCATCAGACCTGCTCGAAAAGGCCAAGCTTGCA
CCGGGCAGTCCCTTCATGCCAGGTGGCCCACTGGCGGATGCACCTGGCGG
CAACCACCCATGA
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