mRNA_5552 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A835Z6E9_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E9_9STRA) HSP 1 Score: 512 bits (1318), Expect = 5.090e-182 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 2
Query: 62 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 829
MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV
Sbjct: 1 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 256
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: D7G2J8_ECTSI (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2J8_ECTSI) HSP 1 Score: 177 bits (449), Expect = 5.300e-50 Identity = 98/239 (41.00%), Postives = 144/239 (60.25%), Query Frame = 2
Query: 116 LLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSE-KNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 829
L Q R +A+ ++ + E+PMK+ VR+ K N WTR+++K SEALA G +LGC+ GD +A+WLP+ +EK QLAAA G + VDP L +K+L E+GA + +V E SL +A+PE+ Y+ + SG FRS + LR C HTG + E+ L FR+ L+Y +SP+ Q+ I + +PL +SE G G T+SH +V++ +SW +A+IL KEYVEV
Sbjct: 49 LTTQGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLVEESVVPSLIEAVPELRHYSTD---SGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALLYTPPVSPLAQVNGQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVSL-ASWPTIAAILKKEYVEV 283
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: K3X788_GLOUD (AMP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X788_GLOUD) HSP 1 Score: 108 bits (269), Expect = 2.050e-23 Identity = 70/257 (27.24%), Postives = 122/257 (47.47%), Query Frame = 2
Query: 83 GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEK-----HNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGE-AVAGPTVSHKDVLAKESSWAVVASILNKEYVEV*G 835
G +R L R+AS V L++ E LP K+ +R K + W+ EL + +A G++ L G+ +A+WLP+ AE + QLAAA G + ++DP + E + +L ++ A + K E ++ PE+ Y N R FR + F L TGF+ G QF ++V + + ++ + + +PL+V+YS+ NG+ G ++H DVL + + S+ + + + G
Sbjct: 9 GLTRLAAPASKLALGARAASTVGGALDEAVERLPHKEALRSLKQDLRWSFKELNAIVDEVANGFHSLKFEPGNVLAVWLPNNAESVITQLAAAKAGVTLAVIDPKVSTAEELEYILHDSKASGLLFEPKIAGRNQTEIVQGLFPELATYRENF----RLFRPKNFRNLHTVISTGFEPVEGIAQFHQVMVNAPEKHEVETVKQVVNEKTPLAVSYSKVNGQNPKKGEVLTHGDVLKRAAELTKTLSLSANDKILITG 261
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A225WUY5_9STRA (AMP-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUY5_9STRA) HSP 1 Score: 101 bits (251), Expect = 6.110e-21 Identity = 71/250 (28.40%), Postives = 121/250 (48.40%), Query Frame = 2
Query: 62 MLALGRI-GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKH-----NESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
MLAL R G +RA+G R+ S V +LN+ + LP K+ +R K + W+ ELK + LA G+ DL ++GD VA+WLP+ AE + QLAAA G + +++P + + +L ++ A V K + ++ PE+ + + FR + F L T ++ G + M+V + + + ++D +PL+VTYS+ G+ V +H D+L + + A
Sbjct: 1 MLALARSKGLTRAMGV--------RTVSTVGAILNEAVDRLPHKEALRSVKQDVRWSFKELKAAVDELANGFLDLQFQSGDVVAVWLPNSAENVLTQLAAARAGLTLAVIEPEVSEAKELAFILEDSRASGLVFEPKQAGRNQTQVVQGLFPELATFRERKEV----FRPKHFRHLHSVITTSWEPVEGMINLNGMMVNSPEPYALQAVTKMLSDKTPLAVTYSKVQGQNPKKSAVLTHGDLLKRAENLA 238
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A662Y0B2_9STRA (AMP-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0B2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.520e-20 Identity = 71/224 (31.70%), Postives = 110/224 (49.11%), Query Frame = 2
Query: 62 MLALGRI-GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAI-----PEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYS 715
ML L R G +RALG L R+AS V L++ LP K+ +R K W+ EL + LA G+ DL +GD VA+WLP+ AE + QLAAA G + +++P + E +L ++ A V K + AI PE++ + + + FR ++F L TGF+ G + + M+V + + L ++D +PL+VTYS
Sbjct: 1 MLGLVRSKGLARALGAQAKLALGARAASTVGAALDEAVTRLPHKEALRSIKQEIRWSFKELNDVVDELANGFLDLKFESGDVVAVWLPNNAENVVTQLAAAKAGLTLAVIEPEVSLPEEIAFILQDSKASGLVFEPKMAGRDQTAIVQGLFPELDTFRDHMEV----FRPKQFRHLHSIITTGFEPVEGMIHLKEMMVNCPEPYAMKALTKTLSDKTPLAVTYS 220
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: G5A2G9_PHYSP (AMP-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A2G9_PHYSP) HSP 1 Score: 99.8 bits (247), Expect = 2.250e-20 Identity = 68/241 (28.22%), Postives = 116/241 (48.13%), Query Frame = 2
Query: 95 ALGFVDGLLQQT---RSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKH-----NESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
AL GL++ R+AS V L++ LP K+ +R K + W+ EL + LA+G+ DL R GD VA+WLP+ AE + QLAAA G + +++P + + E +L ++ A V K E ++ PE+ + + FR ++F L T ++ G + M+V + + + + ++D +PL+VTYS+ G+ V +H D+L + A
Sbjct: 3 ALARSKGLMRAAMGARAASTVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLPNSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFEPKQAGRNQTEIVQGLFPELATFRERMEV----FRPKQFRHLHSVITTSWEPVEGMINLNGMMVNNAEPYAMKAVTKTLSDKTPLAVTYSKVEGQNPKKSAVLTHGDLLKRAEKLA 239
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A6G0WW75_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW75_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.820e-18 Identity = 71/239 (29.71%), Postives = 109/239 (45.61%), Query Frame = 2
Query: 125 QTRSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNG-EAVAGPTVSHKDVLAKESSWAVVASILNKEYV 823
+ + S V L E LP ++ VR F K +R W+ AE + L G+ +L GD +A+WLP+ AE + Q AAA G I VDP +D V+ V+ ++ A + K+N + ++ AN F + F T + T D FLQFR++LV ++ Q +A I + +PL V Y KNG G ++H DVL K A + + + +
Sbjct: 20 RAKQFSTVGAALEKAVEALPHREAVRAFAKVDRDDDLRWSYAEFNRYVDELTNGFLELKFNKGDTLALWLPNNAENLVAQFAAAKAGLTIAAVDPTIDTVDELAFVIKDSKAVALLFDPKNNSNDPTSV-------ANQVFGQQGFHGSLHTVIT----TAIDPVYDFLQFRHILVNALEPHHSRQREAEINESTPLVVPYLRKNGGNPTRGTVLTHGDVLKKAKQIADSVKLTSNDKI 247
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: H3GLQ7_PHYRM (AMP-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLQ7_PHYRM) HSP 1 Score: 94.0 bits (232), Expect = 2.740e-18 Identity = 73/249 (29.32%), Postives = 113/249 (45.38%), Query Frame = 2
Query: 62 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEK-----HNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
MLAL R AL G R+AS V L+ LP K+ +R K + W+ EL + LA G+ DL GD VA+WLP+ AE + QLAAA G + +++P + + + +L ++ A V K E ++ PE+ + N + FR R F L T ++ G + M+V + + L + D +PL+VTYS+ G+ V +H D+L + A
Sbjct: 1 MLALVRS--KSALRMASG----ARAASTVGAALDAAVARLPHKEALRSVKQDVRWSFKELSAAVDELANGFVDLQFARGDVVAVWLPNSAENVLTQLAAAKAGLTLAVIEPEVSQADELAFILQDSKASGLVFEPKMQGRNQTEIVQGLFPELASFRENLEV----FRPRNFRHLHNIITTSWEPVEGMVNLNGMMVNSTEPYAMKALTKTLDDKTPLAVTYSKVAGQNPKKSAVLTHGDLLKRAEKLA 239
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A485L130_9STRA (Aste57867_13747 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L130_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.070e-17 Identity = 67/226 (29.65%), Postives = 104/226 (46.02%), Query Frame = 2
Query: 131 RSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVA-GPTVSHKDVLAKESSWA 790
+S + + L + LP ++ VR F +R W+ AE + L G+ DL + GD +A+WLP+ AE + Q AAA G I VDPA+ E + V+ ++ A + K N S A+ + F+ G+ + T + T D FLQFR++L ++ I + I D +PL V Y+ NG+A G ++H DV K A
Sbjct: 18 KSFATIGATLEKAVDTLPHREAVRAFANVDRDDDLRWSYAEFNSYVDELTNGFLDLQFKKGDTIALWLPNNAENLVAQYAAAKAGLTIAAVDPAITSAEELEFVVKDSKAVALLFDPKANTSDPTAVADQVFH-------GQGLKGSLHTVIT----TAIDPYPNFLQFRHILCNALEPHHIQRRTKEINDSTPLVVPYAANNGQAPKRGAVLTHGDVFKKAQEIA 232
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: W4GP84_9STRA (EF-hand domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP84_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.290e-14 Identity = 65/226 (28.76%), Postives = 105/226 (46.46%), Query Frame = 2
Query: 110 DGLLQQTRSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEA-VAGPTVSHKDVL 769
G ++ S V L + LP ++ VR F +R ++ E L G+ +L + GD +A+WLP+ AE + Q AAA G I VDP++ V+ V+ ++ A + K+N+S + + F AN ++ L+ T D GFLQFR +LV ++ + Q A I +PL V+Y+ NG+ + G ++H DVL
Sbjct: 16 QGASAVAKAFSTVGATLEKAVDALPHREAVRAFNNVDRDDDLRFSYQEFNNFVNELTNGFLELQFQKGDTIALWLPNNAENLVAQFAAAKAGLNIAAVDPSISTVDELAFVVKDSKAVALLFDPKNNDSDSTDVAKQVF--ANQPYA---------RGLQTVITTAIDPVHGFLQFRRILVNALESHYVEQRTAQIDAAAPLVVSYTRNNGQTPIRGAALTHGDVL 230 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1016bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACCAGCAGAGCACCGGGGGCAGAGCCTCAGAGGAAGGCATAGCAGAGGTback to top protein sequence of jgi.p|Trimin1|35573 >Trimin1|35573|CE35572_368 ID=Trimin1|35573|CE35572_368|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKback to top mRNA from alignment at Contig_19:1004964..1007578+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2615bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:1004964..1007578+ >mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )back to top |