mRNA_5552 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|35573
Unique NamemRNA_5552
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A835Z6E9_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E9_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 5.090e-182
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 2
Query:   62 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 829
            MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV
Sbjct:    1 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 256          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: D7G2J8_ECTSI (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2J8_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 5.300e-50
Identity = 98/239 (41.00%), Postives = 144/239 (60.25%), Query Frame = 2
Query:  116 LLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSE-KNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 829
            L  Q R    +A+ ++ +  E+PMK+ VR+ K N  WTR+++K  SEALA G  +LGC+ GD +A+WLP+ +EK   QLAAA  G  +  VDP L      +K+L E+GA + +V E    SL +A+PE+  Y+ +   SG  FRS +   LR C HTG + E+  L FR+ L+Y   +SP+ Q+   I + +PL   +SE   G    G T+SH +V++  +SW  +A+IL KEYVEV
Sbjct:   49 LTTQGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLVEESVVPSLIEAVPELRHYSTD---SGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALLYTPPVSPLAQVNGQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVSL-ASWPTIAAILKKEYVEV 283          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: K3X788_GLOUD (AMP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X788_GLOUD)

HSP 1 Score: 108 bits (269), Expect = 2.050e-23
Identity = 70/257 (27.24%), Postives = 122/257 (47.47%), Query Frame = 2
Query:   83 GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEK-----HNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGE-AVAGPTVSHKDVLAKESSWAVVASILNKEYVEV*G 835
            G +R       L    R+AS V   L++  E LP K+ +R  K +  W+  EL    + +A G++ L    G+ +A+WLP+ AE +  QLAAA  G  + ++DP +   E  + +L ++ A   +   K       E ++   PE+  Y  N     R FR + F  L     TGF+   G  QF  ++V   +   +  ++  + + +PL+V+YS+ NG+    G  ++H DVL + +      S+   + + + G
Sbjct:    9 GLTRLAAPASKLALGARAASTVGGALDEAVERLPHKEALRSLKQDLRWSFKELNAIVDEVANGFHSLKFEPGNVLAVWLPNNAESVITQLAAAKAGVTLAVIDPKVSTAEELEYILHDSKASGLLFEPKIAGRNQTEIVQGLFPELATYRENF----RLFRPKNFRNLHTVISTGFEPVEGIAQFHQVMVNAPEKHEVETVKQVVNEKTPLAVSYSKVNGQNPKKGEVLTHGDVLKRAAELTKTLSLSANDKILITG 261          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A225WUY5_9STRA (AMP-binding domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUY5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.110e-21
Identity = 71/250 (28.40%), Postives = 121/250 (48.40%), Query Frame = 2
Query:   62 MLALGRI-GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKH-----NESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
            MLAL R  G +RA+G         R+ S V  +LN+  + LP K+ +R  K +  W+  ELK   + LA G+ DL  ++GD VA+WLP+ AE +  QLAAA  G  + +++P +   +    +L ++ A   V   K       + ++   PE+  +    +     FR + F  L     T ++   G +    M+V   +   +  +   ++D +PL+VTYS+  G+      V +H D+L +  + A
Sbjct:    1 MLALARSKGLTRAMGV--------RTVSTVGAILNEAVDRLPHKEALRSVKQDVRWSFKELKAAVDELANGFLDLQFQSGDVVAVWLPNSAENVLTQLAAARAGLTLAVIEPEVSEAKELAFILEDSRASGLVFEPKQAGRNQTQVVQGLFPELATFRERKEV----FRPKHFRHLHSVITTSWEPVEGMINLNGMMVNSPEPYALQAVTKMLSDKTPLAVTYSKVQGQNPKKSAVLTHGDLLKRAENLA 238          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A662Y0B2_9STRA (AMP-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0B2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-20
Identity = 71/224 (31.70%), Postives = 110/224 (49.11%), Query Frame = 2
Query:   62 MLALGRI-GRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAI-----PEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYS 715
            ML L R  G +RALG    L    R+AS V   L++    LP K+ +R  K    W+  EL    + LA G+ DL   +GD VA+WLP+ AE +  QLAAA  G  + +++P +   E    +L ++ A   V   K     + AI     PE++ +  + +     FR ++F  L     TGF+   G +  + M+V   +   +  L   ++D +PL+VTYS
Sbjct:    1 MLGLVRSKGLARALGAQAKLALGARAASTVGAALDEAVTRLPHKEALRSIKQEIRWSFKELNDVVDELANGFLDLKFESGDVVAVWLPNNAENVVTQLAAAKAGLTLAVIEPEVSLPEEIAFILQDSKASGLVFEPKMAGRDQTAIVQGLFPELDTFRDHMEV----FRPKQFRHLHSIITTGFEPVEGMIHLKEMMVNCPEPYAMKALTKTLSDKTPLAVTYS 220          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: G5A2G9_PHYSP (AMP-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A2G9_PHYSP)

HSP 1 Score: 99.8 bits (247), Expect = 2.250e-20
Identity = 68/241 (28.22%), Postives = 116/241 (48.13%), Query Frame = 2
Query:   95 ALGFVDGLLQQT---RSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKH-----NESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
            AL    GL++     R+AS V   L++    LP K+ +R  K +  W+  EL    + LA+G+ DL  R GD VA+WLP+ AE +  QLAAA  G  + +++P + + E    +L ++ A   V   K       E ++   PE+  +    +     FR ++F  L     T ++   G +    M+V + +   +  +   ++D +PL+VTYS+  G+      V +H D+L +    A
Sbjct:    3 ALARSKGLMRAAMGARAASTVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLPNSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFEPKQAGRNQTEIVQGLFPELATFRERMEV----FRPKQFRHLHSVITTSWEPVEGMINLNGMMVNNAEPYAMKAVTKTLSDKTPLAVTYSKVEGQNPKKSAVLTHGDLLKRAEKLA 239          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A6G0WW75_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW75_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.820e-18
Identity = 71/239 (29.71%), Postives = 109/239 (45.61%), Query Frame = 2
Query:  125 QTRSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNG-EAVAGPTVSHKDVLAKESSWAVVASILNKEYV 823
            + +  S V   L    E LP ++ VR F K +R     W+ AE     + L  G+ +L    GD +A+WLP+ AE +  Q AAA  G  I  VDP +D V+    V+ ++ A   +   K+N +   ++       AN  F  + F     T +     T  D    FLQFR++LV  ++     Q +A I + +PL V Y  KNG     G  ++H DVL K    A    + + + +
Sbjct:   20 RAKQFSTVGAALEKAVEALPHREAVRAFAKVDRDDDLRWSYAEFNRYVDELTNGFLELKFNKGDTLALWLPNNAENLVAQFAAAKAGLTIAAVDPTIDTVDELAFVIKDSKAVALLFDPKNNSNDPTSV-------ANQVFGQQGFHGSLHTVIT----TAIDPVYDFLQFRHILVNALEPHHSRQREAEINESTPLVVPYLRKNGGNPTRGTVLTHGDVLKKAKQIADSVKLTSNDKI 247          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: H3GLQ7_PHYRM (AMP-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLQ7_PHYRM)

HSP 1 Score: 94.0 bits (232), Expect = 2.740e-18
Identity = 73/249 (29.32%), Postives = 113/249 (45.38%), Query Frame = 2
Query:   62 MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEK-----HNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVAGPTV-SHKDVLAKESSWA 790
            MLAL R     AL    G     R+AS V   L+     LP K+ +R  K +  W+  EL    + LA G+ DL    GD VA+WLP+ AE +  QLAAA  G  + +++P + + +    +L ++ A   V   K       E ++   PE+  +  N +     FR R F  L     T ++   G +    M+V   +   +  L   + D +PL+VTYS+  G+      V +H D+L +    A
Sbjct:    1 MLALVRS--KSALRMASG----ARAASTVGAALDAAVARLPHKEALRSVKQDVRWSFKELSAAVDELANGFVDLQFARGDVVAVWLPNSAENVLTQLAAAKAGLTLAVIEPEVSQADELAFILQDSKASGLVFEPKMQGRNQTEIVQGLFPELASFRENLEV----FRPRNFRHLHNIITTSWEPVEGMVNLNGMMVNSTEPYAMKALTKTLDDKTPLAVTYSKVAGQNPKKSAVLTHGDLLKRAEKLA 239          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: A0A485L130_9STRA (Aste57867_13747 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L130_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.070e-17
Identity = 67/226 (29.65%), Postives = 104/226 (46.02%), Query Frame = 2
Query:  131 RSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEAVA-GPTVSHKDVLAKESSWA 790
            +S + +   L    + LP ++ VR F   +R     W+ AE     + L  G+ DL  + GD +A+WLP+ AE +  Q AAA  G  I  VDPA+   E  + V+ ++ A   +   K N S   A+ +  F+       G+  +    T +     T  D    FLQFR++L   ++   I +    I D +PL V Y+  NG+A   G  ++H DV  K    A
Sbjct:   18 KSFATIGATLEKAVDTLPHREAVRAFANVDRDDDLRWSYAEFNSYVDELTNGFLDLQFKKGDTIALWLPNNAENLVAQYAAAKAGLTIAAVDPAITSAEELEFVVKDSKAVALLFDPKANTSDPTAVADQVFH-------GQGLKGSLHTVIT----TAIDPYPNFLQFRHILCNALEPHHIQRRTKEINDSTPLVVPYAANNGQAPKRGAVLTHGDVFKKAQEIA 232          
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Match: W4GP84_9STRA (EF-hand domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP84_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.290e-14
Identity = 65/226 (28.76%), Postives = 105/226 (46.46%), Query Frame = 2
Query:  110 DGLLQQTRSASCVATVLNDLTEELPMKDTVR-FTKHNR----LWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAAITDDSPLSVTYSEKNGEA-VAGPTVSHKDVL 769
             G     ++ S V   L    + LP ++ VR F   +R     ++  E       L  G+ +L  + GD +A+WLP+ AE +  Q AAA  G  I  VDP++  V+    V+ ++ A   +   K+N+S    + +  F  AN  ++           L+    T  D   GFLQFR +LV  ++   + Q  A I   +PL V+Y+  NG+  + G  ++H DVL
Sbjct:   16 QGASAVAKAFSTVGATLEKAVDALPHREAVRAFNNVDRDDDLRFSYQEFNNFVNELTNGFLELQFQKGDTIALWLPNNAENLVAQFAAAKAGLNIAAVDPSISTVDELAFVVKDSKAVALLFDPKNNDSDSTDVAKQVF--ANQPYA---------RGLQTVITTAIDPVHGFLQFRRILVNALESHYVEQRTAQIDAAAPLVVSYTRNNGQTPIRGAALTHGDVL 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35573 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835Z6E9_9STRA5.090e-182100.00AMP-binding domain-containing protein n=1 Tax=Trib... [more]
D7G2J8_ECTSI5.300e-5041.00AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
K3X788_GLOUD2.050e-2327.24AMP-binding domain-containing protein n=1 Tax=Glob... [more]
A0A225WUY5_9STRA6.110e-2128.40AMP-binding domain-containing protein n=1 Tax=Phyt... [more]
A0A662Y0B2_9STRA1.520e-2031.70AMP-binding domain-containing protein n=1 Tax=Noth... [more]
G5A2G9_PHYSP2.250e-2028.22AMP-binding domain-containing protein n=3 Tax=Phyt... [more]
A0A6G0WW75_9STRA1.820e-1829.71AMP-binding domain-containing protein n=1 Tax=Apha... [more]
H3GLQ7_PHYRM2.740e-1829.32AMP-binding domain-containing protein n=1 Tax=Phyt... [more]
A0A485L130_9STRA4.070e-1729.65Aste57867_13747 protein n=1 Tax=Aphanomyces stella... [more]
W4GP84_9STRA1.290e-1428.76EF-hand domain-containing protein n=6 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:1004964..1007578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|35573|CE35572_368
KEGG TC4.C.1.1
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
KEGG rclassRC00002,RC00004,RC00014,RC00017
KEGG ReactionR01021,R01280,R01468
KEGG ModuleM00086,M00090,M00092
KEGG Pathwayko00061,ko00071,ko00564,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,ko05231,map00061,map00071,map00564,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920,map05231
KEGG koko:K00666,ko:K01897,ko:K14156
EC2.7.1.32,2.7.1.82,6.2.1.3
Descriptiono-succinylbenzoate-CoA ligase activity
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0318@1|root,KOG1177@2759|Eukaryota
Evalue1.43e-51
Seed ortholog2880.D7G2J8
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAMP-dependent synthetase/ligase
Ec32 orthologEc-11_002500.1
TranscriptId35895
TrackFilteredModels1
ProteinId35573
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35573gene_5552Tribonema minus UTEX_B_3156 geneContig_19 1004964..1007578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35573Trimin1|35573|CE35572_368Tribonema minus UTEX_B_3156 polypeptideContig_19 1005140..1007394 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5552_1exon_5552_1Tribonema minus UTEX_B_3156 exonContig_19 1004964..1005024 +
exon_5552_2exon_5552_2Tribonema minus UTEX_B_3156 exonContig_19 1005140..1005206 +
exon_5552_3exon_5552_3Tribonema minus UTEX_B_3156 exonContig_19 1005328..1005536 +
exon_5552_4exon_5552_4Tribonema minus UTEX_B_3156 exonContig_19 1005671..1005738 +
exon_5552_5exon_5552_5Tribonema minus UTEX_B_3156 exonContig_19 1005980..1006054 +
exon_5552_6exon_5552_6Tribonema minus UTEX_B_3156 exonContig_19 1006536..1006644 +
exon_5552_7exon_5552_7Tribonema minus UTEX_B_3156 exonContig_19 1007152..1007578 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_5552UTR5_5552Tribonema minus UTEX_B_3156 five_prime_UTRContig_19 1004964..1005024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5552CDS_5552Tribonema minus UTEX_B_3156 CDSContig_19 1005140..1005206 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5552UTR3_5552Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 1007395..1007578 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1016bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACCAGCAGAGCACCGGGGGCAGAGCCTCAGAGGAAGGCATAGCAGAGGT
GCCCCACCAGGATGCTGGCTCTGGGGCGCATCGGGAGATCCCGGGCACTC
GGCTTCGTGGACGGGCTGCTGCAGCAAACACGAAGTGCATCATGTGTGGC
AACGGTTCTGAACGACTTGACAGAGGAGCTGCCGATGAAGGACACTGTAC
GCTTCACTAAGCACAACAGGCTCTGGACGCGTGCAGAACTCAAGCTGCAG
AGCGAGGCGCTGGCCACGGGATGGTATGATTTGGGATGCAGGACTGGCGA
TGCAGTGGCTATATGGTTGCCAGATTACGCAGAGAAGATTGCATGCCAGC
TGGCGGCTGCGATTGGAGGATACAAAATCGTCATTGTGGATCCTGCTTTG
GACAGAGTGGAGCACTTTGACAAGGTGCTGTTTGAGACAGGCGCCAGAAT
AGCCGTGGTGACTGAGAAACACAATGAAAGCTTGAAGAAAGCCATCCCGG
AAATGGAGTTCTATGCAGCAAACCACGACTTCTCTGGACGTCACTTTCGG
TCGCGCCGCTTCACCAAACTGCGTTTCTGCTCACACACGGGCTTTGACCT
GGAGAGCGGCTTCCTGCAGTTCCGCAACATGCTCGTGTACCACATGGACA
TCTCCCCCATACCACAGCTGCAGGCTGCCATCACTGATGACTCGCCGCTC
AGTGTAACCTACAGTGAGAAAAATGGGGAGGCAGTCGCAGGGCCCACCGT
GTCTCACAAAGACGTGCTAGCAAAGGAAAGCTCATGGGCTGTTGTGGCCA
GCATCCTCAACAAGGAGTACGTGGAGGTCTGAGGCGTTTAGGAAAAGGGC
GGGGCGTCGAAAGCTGGTCGAATGATTGGCAGATGGGGTCAACACACTCC
TGCTGCCATGGCATTGACCATGAGGGGGAGAGCTACTAGGCGGCAGTTAT
AGCAAGCGAGCGTCTGCATCGCTACGTCGCAACACAAGAGGCAATGATAA
GCAGATTACATGGTGC
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protein sequence of jgi.p|Trimin1|35573

>Trimin1|35573|CE35572_368 ID=Trimin1|35573|CE35572_368|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp
MLALGRIGRSRALGFVDGLLQQTRSASCVATVLNDLTEELPMKDTVRFTK
HNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAA
IGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEF
YAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPI
PQLQAAITDDSPLSVTYSEKNGEAVAGPTVSHKDVLAKESSWAVVASILN
KEYVEV*
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mRNA from alignment at Contig_19:1004964..1007578+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2615bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )
AACCAGCAGAGCACCGGGGGCAGAGCCTCAGAGGAAGGCATAGCAGAGGT GCCCCACCAGGGTGAGTAAATTGTGCGCTCGAATGTCGGCACCTTTGTTT GTCCCTTTTTCCTGCTGTGCGTGTACACGCGCACTGAACCTCTGCGATTT GGGTGCTTGCTCGCACACGTCTGCAGATGCTGGCTCTGGGGCGCATCGGG AGATCCCGGGCACTCGGCTTCGTGGACGGGCTGCTGCAGCAAAGTAAGTT GCAGTCTACTGTTTTGCCTCATGTGATGTGGTCTCAACAAAAGTAGACCC TGGTGTGGTGGCGGATTTTTAAACCCTGCTCTCACGAAGCTGTTGATGCT GCTGTCTGCTGCAGCACGAAGTGCATCATGTGTGGCAACGGTTCTGAACG ACTTGACAGAGGAGCTGCCGATGAAGGACACTGTACGCTTCACTAAGCAC AACAGGCTCTGGACGCGTGCAGAACTCAAGCTGCAGAGCGAGGCGCTGGC CACGGGATGGTATGATTTGGGATGCAGGACTGGCGATGCAGTGGCTATAT GGTTGCCAGATTACGCAGAGAAGGTGAGTGAAACATGCTAGATGTGAACT TGTTACTGGCATCTGGGTCATAACGTGCGCTGGGAGGTAGAGGTGCGTTT GTATGCTGACTGTTGTGCTTCCTTGTGTCTCATATGTGGCTGTTTCCTGC GTCACAGATTGCATGCCAGCTGGCGGCTGCGATTGGAGGATACAAAATCG TCATTGTGGATCCTGCTTTGGACAGGTACACTGACAGTATCAATGCTGTG TTAGTCGACAGCATTCTGTGGTGCTGCAGATGGTGCAACTTTTAAGGTCA TGGTTTTCAAGGCAGACAACACTTGCTGCCATAATCATGCCAGCTCTAGG TCTGCTCCCGCTGTCTCATTGACCACGACTGCCGCGTCTGCATATGCTGA TGGCTAATCATCAGCTTGCATATGCTGATGGCTACCATTGTTGATCTTCC ATTGCTTGGTGCACAGAGTGGAGCACTTTGACAAGGTGCTGTTTGAGACA GGCGCCAGAATAGCCGTGGTGACTGAGAAACACAATGAAAGGTAAGCGAT CCTGCCATCTTACATGCTGGTTCCGGGAGTGTTGTGTGTTGTAGCATGGT TACACCTTATCAAGTACATCATCTTCATACTGCCGATGGGCCGCTGGTGC GTGCCCAAATTATGCAGTGATGCTAATTCTGTTGAACCTGTGAAGTTTGT GCAGTGCCCTCGCAACTTGGTGCAGATTTTCTCTTGTGCTGCACCTATAG TATTTTATGTTTTGCCCAGTGGCTTGTGTGACTTCTACGCTGTGTTGCTC AGAATGAAGATAAGAGAACTCACCAGTAGCCTGCACGTCTCGCTCGTGCG TTGCATCGCTAGCTACTGAGATGTGTGTGCCCGGTGGGTGGCTGGATCCA ACGCGTTGTCAATAGCTCCCAAAGCATTCCAACACACTGTTCCACACAAG CAAAGCTTCAAATGCAATGTGTGGTTGACGCTGTGTGATGATACGATTAC TTGATTGTTCTGTCTGTTTCAGCTTGAAGAAAGCCATCCCGGAAATGGAG TTCTATGCAGCAAACCACGACTTCTCTGGACGTCACTTTCGGTCGCGCCG CTTCACCAAACTGCGTTTCTGCTCACACACGGTGAGGCAAAAGCGTCAAT TGTTGTCACCTGCATGCACCAGTGCCACGGAGCGCATTGCGTGTGAACAT GCACCTGTAACAGCCGGTAGACTACGCTTGTGGTGCAGGAGCATATTCCA AGTTGATAGCCTGACAGATGCTGTCTTGGAGGTTTGTGTGCACTGATCGG GCGTTGTGTGGTCTCACGCTTGATGCTGCCCAATGATGTGATGGTAGTAC TACAAATTGCATTGAGACGTCATGTGTGCTCATAGACGTCTACCTCATTT GTGATCTTTGTTGTGTTCCAAGGTCACATCAACACGCTTTCAACGGGGGT ATCTTGATTAGCTTCAATGCATGTTGATCAGTTTGAGATCAGCACAAAAA GCATCAGGGTAGGGCATCGGCTTCAGTGTGAATCAACCAGACGCAGTGGC TTTGGCTTGATGCCTGAGTGTCAGTCACATCATGCCAATTCTTATGTGCT TGTGCGCTCTATGCTGTTGGTTGCTATTCCTGTGTCAGGGCTTTGACCTG GAGAGCGGCTTCCTGCAGTTCCGCAACATGCTCGTGTACCACATGGACAT CTCCCCCATACCACAGCTGCAGGCTGCCATCACTGATGACTCGCCGCTCA GTGTAACCTACAGTGAGAAAAATGGGGAGGCAGTCGCAGGGCCCACCGTG TCTCACAAAGACGTGCTAGCAAAGGAAAGCTCATGGGCTGTTGTGGCCAG CATCCTCAACAAGGAGTACGTGGAGGTCTGAGGCGTTTAGGAAAAGGGCG GGGCGTCGAAAGCTGGTCGAATGATTGGCAGATGGGGTCAACACACTCCT GCTGCCATGGCATTGACCATGAGGGGGAGAGCTACTAGGCGGCAGTTATA GCAAGCGAGCGTCTGCATCGCTACGTCGCAACACAAGAGGCAATGATAAG CAGATTACATGGTGC
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Coding sequence (CDS) from alignment at Contig_19:1004964..1007578+

>mRNA_5552 ID=mRNA_5552|Name=jgi.p|Trimin1|35573|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_19:1004964..1007578+ (Tribonema minus UTEX_B_3156 )
ATGCTGGCTCTGGGGCGCATCGGGAGATCCCGGGCACTCGGCTTCGTGGA
CGGGCTGCTGCAGCAAACACGAAGTGCATCATGTGTGGCAACGGTTCTGA
ACGACTTGACAGAGGAGCTGCCGATGAAGGACACTGTACGCTTCACTAAG
CACAACAGGCTCTGGACGCGTGCAGAACTCAAGCTGCAGAGCGAGGCGCT
GGCCACGGGATGGTATGATTTGGGATGCAGGACTGGCGATGCAGTGGCTA
TATGGTTGCCAGATTACGCAGAGAAGATTGCATGCCAGCTGGCGGCTGCG
ATTGGAGGATACAAAATCGTCATTGTGGATCCTGCTTTGGACAGAGTGGA
GCACTTTGACAAGGTGCTGTTTGAGACAGGCGCCAGAATAGCCGTGGTGA
CTGAGAAACACAATGAAAGCTTGAAGAAAGCCATCCCGGAAATGGAGTTC
TATGCAGCAAACCACGACTTCTCTGGACGTCACTTTCGGTCGCGCCGCTT
CACCAAACTGCGTTTCTGCTCACACACGGGCTTTGACCTGGAGAGCGGCT
TCCTGCAGTTCCGCAACATGCTCGTGTACCACATGGACATCTCCCCCATA
CCACAGCTGCAGGCTGCCATCACTGATGACTCGCCGCTCAGTGTAACCTA
CAGTGAGAAAAATGGGGAGGCAGTCGCAGGGCCCACCGTGTCTCACAAAG
ACGTGCTAGCAAAGGAAAGCTCATGGGCTGTTGTGGCCAGCATCCTCAAC
AAGGAGTACGTGGAGGTCTGA
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