mRNA_5527 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162001
Unique NamemRNA_5527
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A835Z8J0_9STRA (Putative myosin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J0_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.310e-84
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLGRYLSLPFVVDSCSLLRTCLGFSM 390
            MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLGRYLSLPFVVDSCSLLRTCLGFSM
Sbjct:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLGRYLSLPFVVDSCSLLRTCLGFSM 130
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: D7FPS0_ECTSI (Myosin heavy chain, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.780e-47
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLG 321
            M RVREEH+ +Q V+ +LN KIS VL+KQEGDFLAAYRAHMYTVQKELQ+LRQRV++AE  LQ+NDKVQ+LED C+WYR+EALRLDSFN+AMKKDLK M  K+ +LG
Sbjct:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILG 107
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A7S2XXS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.330e-39
Identity = 69/89 (77.53%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   52 LNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVL 318
            LN KIS VLSKQE DFLAAYRAHMY VQKELQ+LRQR VDAE ALQ+NDK+Q+LE+ CEWYR+EALRLDSFN+AMKKDLK M +K+ +L
Sbjct:    4 LNDKISGVLSKQESDFLAAYRAHMYNVQKELQALRQRAVDAENALQKNDKIQKLEEECEWYRKEALRLDSFNTAMKKDLKYMKEKLEIL 92
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A3F2RK62_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK62_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.950e-28
Identity = 54/106 (50.94%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVL 318
            M  VRE+H  +  V+G+L+ KISAVL++QE DFLAAYRAHMYTVQKEL  +R+++   E    +++K++++ED  +WYR+EALRLD+F + M KDLK M + +  +
Sbjct:    1 MAVVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYTVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 106
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A7S3XVS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVS7_HETAK)

HSP 1 Score: 108 bits (269), Expect = 1.150e-27
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALR 252
            M RV +EH  +Q V+G LN +ISAVL +QE  FLAAYRAHMY VQKELQ+L+ R   AE  LQ+NDK+Q+LE+ CEWYR+EALR
Sbjct:    1 MKRVDDEHRKVQEVIGQLNERISAVLGQQEAGFLAAYRAHMYNVQKELQALKARAARAENELQKNDKIQKLEEECEWYRKEALR 84
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A329RSS2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RSS2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.340e-26
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLK 291
            M  VR++H  +  V+G+L+ KIS+VL++QE DFLAAYRAHMY VQKEL  +R+++   E    +++K++++ED  +WYR+EALRLD+F + M KDLK
Sbjct:    1 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTKMTKDLK 97
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A8J5J7K0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J7K0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.250e-26
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRM 297
            M  VR++H  +  V+G+L+ KIS+VL++QE DFLAAYRAHMY VQKEL  +R+++   E    +++K++++ED  +WYR+EALRLD+F + M KDLK M
Sbjct:   45 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYM 143
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A2R5GNU1_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNU1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.370e-26
Identity = 55/103 (53.40%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKV 309
            MGRV++ H  + SV+G+L+ K+S VL KQE +FL+AYRAHMY VQKELQ LR +V +AE  LQR++K+++L    +W+R+EALRLD++ ++MKK++K M +K+
Sbjct:   57 MGRVQDLHHQLSSVVGSLSDKVSDVLKKQESEFLSAYRAHMYNVQKELQELRTKVQNAELELQRDEKIKQLTQERDWFRKEALRLDAYATSMKKEIKFMEEKL 159
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A6A3F344_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F344_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.250e-26
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVL 318
            M  VRE+H  +  V+G+L+ KISAVL++QE DFLAAYRAHMY VQKEL  +R+++   E    +++K++++ED  +WYR+EALRLD+F + M KDLK M + +  +
Sbjct:   42 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTIMTKDLKYMKENLEAI 147
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BLAST of jgi.p|Trimin1|162001 vs. uniprot
Match: A0A8K1CGJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGJ7_PYTOL)

HSP 1 Score: 110 bits (274), Expect = 7.220e-26
Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRM 297
            M  VRE+H  +  V+G+L+ KISAVL +QE DFLAAYRAHMY VQKEL  LR+++   E    +++K++++E+  +WYRREALRLD+F +AM KDLK M
Sbjct:   43 MAMVREKHAQLHEVVGSLSDKISAVLGRQEKDFLAAYRAHMYNVQKELHELREKIHRNETVENKSEKIKKIEEERDWYRREALRLDAFTTAMTKDLKYM 141
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162001 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8J0_9STRA3.310e-84100.00Putative myosin heavy chain n=1 Tax=Tribonema minu... [more]
D7FPS0_ECTSI1.780e-4773.83Myosin heavy chain, putative n=1 Tax=Ectocarpus si... [more]
A0A7S2XXS8_9STRA5.330e-3977.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3F2RK62_9STRA2.950e-2850.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S3XVS7_HETAK1.150e-2764.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A329RSS2_9STRA2.340e-2651.55Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A8J5J7K0_9STRA3.250e-2651.52Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A2R5GNU1_9STRA4.370e-2653.40Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A6A3F344_9STRA5.250e-2650.00Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A8K1CGJ7_PYTOL7.220e-2655.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:796118..797429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162001|e_gw1.19.162.1
Max annot lvl2759|Eukaryota
EggNOG OGs29GIY@1|root,2RPR6@2759|Eukaryota
Evalue2.92e-48
Seed ortholog2880.D7FPS0
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmyosin heavy chain, putative
Ec32 orthologEc-20_001120.1
TranscriptId162323
TrackFilteredModels1
ProteinId162001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162001gene_5527Tribonema minus UTEX_B_3156 geneContig_19 796118..797429 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5527_1exon_5527_1Tribonema minus UTEX_B_3156 exonContig_19 796118..796272 +
exon_5527_2exon_5527_2Tribonema minus UTEX_B_3156 exonContig_19 797192..797429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5527CDS_5527Tribonema minus UTEX_B_3156 CDSContig_19 796118..796272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162001Trimin1|162001|e_gw1.19.162.1Tribonema minus UTEX_B_3156 polypeptideContig_19 796118..797429 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5527 ID=mRNA_5527|Name=jgi.p|Trimin1|162001|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_19:796118..797429+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCGCGTGCGAGAGGAGCACACCCACATCCAGAGCGTGCTGGGGAC
GCTGAACAGCAAAATATCGGCGGTGCTGTCCAAGCAGGAGGGGGACTTTC
TGGCAGCGTACCGAGCGCACATGTATACCGTGCAGAAAGAGTTACAGTCG
CTGAGGCAGCGCGTTGTGGACGCCGAGAAGGCGCTGCAGCGCAACGACAA
GGTGCAGCGGCTGGAGGACGCGTGCGAGTGGTACCGCCGCGAGGCGCTGC
GGCTGGACAGCTTCAACAGCGCCATGAAGAAGGACCTCAAGCGCATGGGG
GACAAGGTGGCAGTGCTCGGTAGGTACTTGTCCTTGCCATTTGTTGTGGA
TTCGTGTAGCCTGCTACGTACCTGTCTCGGGTTTTCAATGTAG
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protein sequence of jgi.p|Trimin1|162001

>Trimin1|162001|e_gw1.19.162.1 ID=Trimin1|162001|e_gw1.19.162.1|Name=jgi.p|Trimin1|162001|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQS
LRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMG
DKVAVLGRYLSLPFVVDSCSLLRTCLGFSM*
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mRNA from alignment at Contig_19:796118..797429+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5527 ID=mRNA_5527|Name=jgi.p|Trimin1|162001|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1312bp|location=Sequence derived from alignment at Contig_19:796118..797429+ (Tribonema minus UTEX_B_3156 )
ATGGGGCGCGTGCGAGAGGAGCACACCCACATCCAGAGCGTGCTGGGGAC
GCTGAACAGCAAAATATCGGCGGTGCTGTCCAAGCAGGAGGGGGACTTTC
TGGCAGCGTACCGAGCGCACATGTATACCGTGCAGAAAGAGTTACAGTCG
CTGAGGTGAGTCCTGCATCCCAGGTAGTGAGCCGCTTGACAGGCATGGCT
GCATGTAGAGCCAACTTCGTGCCAGCTGAGTTGAGCCATGGGTCCGCGCT
GAGGTTCACTTCGCTCTGTACACCTCATGTACTATGTAGTACCACACAGC
ATCTTCTGAACGGCGGAGAATGGCCTGTGGTTCTCGGGTTTGAACGGCGG
AGAATGGCCTGTGGTTCTCGGGTCTGCTGAGGCAGGACATGCTGCCGCAG
CAGCTGACTTGAAGAGGTGCAGCGGCTTTGTGTTCAAATATACTGCAGAG
CCAGCATTGTAGTTGTTGTGGGATCGTCATGCTTCATCAATAGCTGTGAG
ATGCTACTCGCCATTTGTTGTTCATGTTGGCATGAAGGCACTGCCGGCTT
GAAAGCAAAACAAAGCATGTGCTCTGGAGGCATCCATGTCGCGTGCACAG
CAGAGCCTTGGATGCAGGAAGTACTGTTGTCTACTTCAAACTATATCATA
GGCCCATGCAACACATAAGCTATGAGGACTGCCGACGCTATCTGTATGTG
CGCCACAAATCAGCTGGCGGGACCACATCCAGCCTCCGTGCCATGAGCCT
GGTTCGTGCAAACCGCCTTTCAGCAAGGTCGCAAGGACTCCCACATGTCT
ACAAGTACACACATGCAGCATCCCACGTACTGCAACTACTCCTGTAATGA
CCGCATGCGACGCCTCTGATCACCATGCATACACCAACAGTCGCGAACAG
CTCCGCAGCCAGCACGTGCAGGACGCGGAGGAGTCTTTGCAGTGCAGTGC
CGAAAGCTTGCTGCAACCTTTCATTTCTCGCCAGGGCCGCATCTGCACGT
GCCCCTCTGCGCGCATACATAGGACTTGCGTGCCCTTTTCAATCGTATGA
CGCTTGCGTGACGTGGCTCCGCAGGCAGCGCGTTGTGGACGCCGAGAAGG
CGCTGCAGCGCAACGACAAGGTGCAGCGGCTGGAGGACGCGTGCGAGTGG
TACCGCCGCGAGGCGCTGCGGCTGGACAGCTTCAACAGCGCCATGAAGAA
GGACCTCAAGCGCATGGGGGACAAGGTGGCAGTGCTCGGTAGGTACTTGT
CCTTGCCATTTGTTGTGGATTCGTGTAGCCTGCTACGTACCTGTCTCGGG
TTTTCAATGTAG
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Coding sequence (CDS) from alignment at Contig_19:796118..797429+

>mRNA_5527 ID=mRNA_5527|Name=jgi.p|Trimin1|162001|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_19:796118..797429+ (Tribonema minus UTEX_B_3156 )
ATGGGGCGCGTGCGAGAGGAGCACACCCACATCCAGAGCGTGCTGGGGAC
GCTGAACAGCAAAATATCGGCGGTGCTGTCCAAGCAGGAGGGGGACTTTC
TGGCAGCGTACCGAGCGCACATGTATACCGTGCAGAAAGAGTTACAGTCG
CTGAGGCAGCGCGTTGTGGACGCCGAGAAGGCGCTGCAGCGCAACGACAA
GGTGCAGCGGCTGGAGGACGCGTGCGAGTGGTACCGCCGCGAGGCGCTGC
GGCTGGACAGCTTCAACAGCGCCATGAAGAAGGACCTCAAGCGCATGGGG
GACAAGGTGGCAGTGCTCGGTAGGTACTTGTCCTTGCCATTTGTTGTGGA
TTCGTGTAGCCTGCTACGTACCTGTCTCGGGTTTTCAATGTAG
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