mRNA_5488 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348056
Unique NamemRNA_5488
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835Z5J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J6_9STRA)

HSP 1 Score: 535 bits (1379), Expect = 1.840e-190
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
Query:    1 MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA 867
            MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA
Sbjct:    1 MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA 289          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A836CFS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS2_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.210e-68
Identity = 139/285 (48.77%), Postives = 192/285 (67.37%), Query Frame = 1
Query:   19 IGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLS-YSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVK----AATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGK 858
            +  L LLLCT S N      +  A +  ++ G+ + F KLAA GD Y    K+V +++E GDVNGSN+C G FV +++R+ R +Y+S+  DN++S  SV VS+ KG YR CTD E+ST+S   YS+   CCS+  +L G E+I +  G+++  L+ Q+LIT+   + +PL +++XXXXXXXXXXXXX        TA VTL +DC ++++   T T D C RG+CVSSS +QN YWCT KL+ A +TGT+ V+G+GLNQPKIDLA LPAGYT+ AR DF  E GK
Sbjct:   11 LSLLLLLLCTPSPN------VNAAPDGEAQHGAGLRFDKLAAVGDWYKSTSKSVVLTVENGDVNGSNVCFGTFVEINLRVSRNAYNSNVKDNNYSYGSVHVSYTKGAYRPCTDQEVSTSSYGIYSTDTTCCSDVVTLSGEESI-AKAGSWQFDLSKQDLITSTLNINIPLQENAXXXXXXXXXXXXXXXXEPATGTAVVTLNVDCVNAISRHSTTTADSCTRGECVSSSGQQNKYWCTKKLNDAKVTGTVRVRGQGLNQPKIDLAKLPAGYTVAARADFDVETGK 288          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835Z0L8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L8_9STRA)

HSP 1 Score: 211 bits (537), Expect = 4.640e-63
Identity = 125/275 (45.45%), Postives = 172/275 (62.55%), Query Frame = 1
Query:   34 LLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGK 858
            LLL TSS +    +  +V  +     G+ + F +LA  GD Y    K V + +EKGDVNGS+ CSG FV MS+ + R +YDS+  D + S SSV   + KG++RDCTD+E++T+S  Y +S  CCS+  SL G  +I   VGTFKLGL  Q LIT+  +V +PL+  S               AATA V   IDC + +N  VTL GD C RG+C S++ +Q++YWCTTKL  A +TGT+ +QG   +QPK+DLA LP+GYT+VAR D + ++GK
Sbjct:   11 LLLSTSSFSLKADSNSEVQHD-----GAALRFNQLATMGDWYKTTSKGVRLILEKGDVNGSSQCSGKFVEMSLHITRDTYDSNMSDETGSYSSVYFDYSKGSWRDCTDSEVTTSS--YFTSINCCSDRDSLSGSADIPE-VGTFKLGLGKQQLITSTTSVKIPLFAGSSTSSGE-------TPAATAVVKFNIDCDNLINRHVTLAGDACTRGECYSTTGQQDNYWCTTKLGDATVTGTVELQG--FSQPKLDLAKLPSGYTMVARADLFIDNGK 268          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835Z906_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z906_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.240e-61
Identity = 122/232 (52.59%), Postives = 156/232 (67.24%), Query Frame = 1
Query:  178 VHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYG-YENIDSGVGTFKLGLTSQN-LITAKATVTVPLYDSSXXXXXXXXXXXXXV---KAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGK---GLNQPKIDLANLPAGYTLVARTDFYTE 849
            +++SIEKGDVNGSNICSG FVAMS++L+ FSY S+ PD+ FS +++ V++ KG YR+C   EL++TS + SSSN CCS++TSLYG  E+I S VGTF LGL   + LITA A V VPLYDSS                  ++ A VTLK+DCT+ LN  VT  GD C RG+C+ SS +++ YWCTTK D AAL+GT  V  K      Q KI+LA LP GYTL AR   +T+
Sbjct:    1 MYVSIEKGDVNGSNICSGKFVAMSIQLDLFSYKSNVPDDDFSFNAIYVNYKKGKYRNCKPDELTSTSSAVSSSNSCCSDSTSLYGSVEDISSEVGTFTLGLKKDSELITAFAKVRVPLYDSSSTSSSHDEAPPALAATGSSSMALVTLKMDCTNVLNRHVTKAGDLCTRGECIHSSGQEDKYWCTTKWDDAALSGTFEVAVKFDPSRGQSKINLAKLPPGYTLRARAQTFTK 232          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A836C930_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C930_9STRA)

HSP 1 Score: 202 bits (513), Expect = 2.690e-59
Identity = 131/293 (44.71%), Postives = 169/293 (57.68%), Query Frame = 1
Query:    1 MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLS---YSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTT--KLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTI 864
            +  S+C G LSLL+CT SS++          EV   +G    F KLAAKGD Y   +KTV MSIEKGDVNGSNICSG F +M++RL R+S D S+ D   S SSV +S+ +G +RDC   E ST++     Y     CCS+T  L GY ++   VG F+LGL    LITA A + VPL  +S                 TAKV+L++DC + +N      GD C+RGDCVSS+ EQ+  WC T    D A LTGTI + G    + K+DLA  P GYT+ AR DF  + GK +
Sbjct:    2 VSLSRCAGLLSLLMCTMSSSSAAEPTGNGGSEVQPGAGD--RFNKLAAKGDWYKDSNKTVRMSIEKGDVNGSNICSGKFASMNIRLTRYSSDRSDSDKC-SESSVSISYRRGMWRDCEPDETSTSTYGGGYYGFDKSCCSDTLHLTGYTSVPE-VGIFRLGL-KDKLITAVANIEVPLDQTSSSSSGDNTGGTI----VTAKVSLQMDCVNVINRHNIFAGDFCLRGDCVSSTGEQDINWCATAANTDDAVLTGTIELTGDV--KLKVDLAAPPTGYTVSARADFEADKGKVV 283          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A836C7V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.800e-57
Identity = 133/253 (52.57%), Postives = 159/253 (62.85%), Query Frame = 1
Query:  112 GSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENI-DSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA 867
            G+   F KLAAKGD Y    K VH+S EKGDVNGSNICSG F +M + L R S DSS  D   S S V V + KGT+RDCT  E ST+S SYS+S  CC +  +L GY  + ++  GTFKLGL  + LITAK  V VPL  SS XXXX           ATA V L++DC + +N   T  GD CVRGDCVS + E + YWCTTK D A LTGTI +  KG     +DLA LPAGYT+ AR DF  ++GK I+
Sbjct:  307 GAGARFNKLAAKGDWYEDSYKEVHVSFEKGDVNGSNICSGRFASMYLGLHRSSSDSSV-DGKSSDSYVHVRYHKGTWRDCTPDETSTSS-SYSASGSCCRDRVTLSGYATLPEAPPGTFKLGLKGK-LITAKVDVAVPLDQSSSXXXXSNGASL----TATAVVKLQMDCVNVINRYTTQAGDSCVRGDCVSFTGEDDKYWCTTKADDATLTGTIEL--KGDIALTVDLAKLPAGYTMSARADFEADNGKVIS 550          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835ZB26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB26_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.040e-45
Identity = 109/289 (37.72%), Postives = 150/289 (51.90%), Query Frame = 1
Query:    1 MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQNLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA 867
            MG S+C+GAL ++L  S S A+PH E   A++   + G  + F +L+ +               EKGD                                      V+++KG +RDC   EL+T SL+Y +SNPCCS++ SL G+ NID  VG+F LGL  Q LITA A V VP+Y+ S             V  ATA + LK+ C + +N  V L G  C RGDCV+   +Q+ YWCT+K   AALTGT+ ++     + K+D+A LPAGYTLVAR D +T+  K  A
Sbjct:    1 MGLSRCVGALCIILLLSVS-AMPHTE---ANDSEVQPGPGLRFNELSEQA--------------EKGDC-------------------------------------VTYNKGAWRDCIGDELTTNSLAYYNSNPCCSDSVSLEGFGNIDPEVGSFTLGLKKQ-LITATANVKVPVYEVSSSSTSNSGDPQMPV--ATAVLALKLGCVNVINRHVALAGKSCTRGDCVTVKGDQSAYWCTSKAGDAALTGTMELRDHTKPKWKVDIAKLPAGYTLVARADLHTDTSKVTA 231          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835Z8N6_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.050e-25
Identity = 86/282 (30.50%), Postives = 138/282 (48.94%), Query Frame = 1
Query:   25 ALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKGDRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSFSGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDSGVGTFKLGLTSQ-NLITAKATVTVPLYDSSXXXXXXXXXXXXXVKAATAKVTLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGTIGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA 867
            AL L++  +++ A+     KVAD      G   H   LA  GD+Y    K + +SIEKG+VNGS+ C+G + A+++   R +   ++  N      +  ++     R+CT  EL   S S  S   CC ++T L G          FK+  T   NL  A+ + T+ L  +              V      V + + C   ++  VT TG+RC+   CVSS   +   +CT ++   ALTGT+ +  K L QP ++LA+LPAGY+++ R D + +  +T+A
Sbjct: 1152 ALGLMMAPAAAAALASTAEKVADP-----GFASHLGSLAGPGDKYKDVTKYLSVSIEKGNVNGSHSCTGQYTAINLFAVRDTVTGADSSNF---GYIEFAYRLAKRRECTADELENFSSSSDSPPECCEDSTDLGGIVFFPLAGSVFKVTPTQDGNLPLAQLSSTLTLQGTKTTKGKEVALPDSKVV-----VDVALQCQKRIDETVTYTGERCIGAKCVSSEGSRTHDYCTDRIKEGALTGTVDI--KYLKQPPLNLADLPAGYSVLGRADIFVDAAETVA 1418          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A835Z8S9_9STRA (Thioredoxin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S9_9STRA)

HSP 1 Score: 541 bits (1393), Expect = 2.440e-191
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 3
Query:   39 MASNDILAMLGTGDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS 902
            MASNDILAMLGTGDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS
Sbjct:    1 MASNDILAMLGTGDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS 288          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A8J5XBT9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBT9_DIALT)

HSP 1 Score: 218 bits (555), Expect = 7.350e-63
Identity = 126/300 (42.00%), Postives = 175/300 (58.33%), Query Frame = 3
Query:    6 WPPRLSIERDTMASNDILAMLGTGDLVGPKGNTVPISSLAGKS-LALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS 902
            WP +  +  D +   D  A L T    G  G+ V +  L GK  L +YFSAHWCPPC+ FTP L++VY+A++ +GRDDFEF+F+SSDRS  +F EY  + PWL +P      K ALS RF V GIP+ + +   G  +NA ARGA M DPTGA FPW P+P ++LE   +     +N+ P++VA LEG D+  QREAI   +R A   A                +FYA  +  V  +VR + G  A++    A +L+LD+PD G YYV DA +VT  +L A +  +  G + LTR+Q++
Sbjct:  142 WPQKSVL--DLLGGAD--AQLLTSPAAGGDGDDVRVGELWGKKKLGVYFSAHWCPPCKAFTPKLIEVYKALKQSGRDDFEFVFVSSDRSTNEFSEYFGSQPWLGIPPGD-PRKAALSRRFGVEGIPTFVMLDERGATINANARGAVMADPTGARFPWAPEPAADLEDGPD----GLNETPSVVALLEGLDEAAQREAIAAVIRVAK--ATRESSRAAGEDESPFCFFYATAAANVTLQVRKLTGQPASAPKGHATLLLLDIPDDGGYYVGDAHDVTDASLKALLADY--GAKKLTRQQMA 428          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A6V1NWZ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWZ1_HETAK)

HSP 1 Score: 214 bits (546), Expect = 1.120e-61
Identity = 122/277 (44.04%), Postives = 164/277 (59.21%), Query Frame = 3
Query:   75 GDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYA-KRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS 902
            GD    K  TV  S + GK+L +YFSAHWC PCR FTP L KVY  ++  G+++FE IF+S D+S++QF+EY   MPWL++PY  KR ++  L+ RF V GIP L+ + PDGTV+NA ARG    D     FPW P+P+ +L +T EC G  IN+ P+LV F+EG DD++Q EA    L  A E A               L+F A G G +  +VR M GL     +    M++LD+PD G YY SDA E+  +T+  F   +   K   TR+QLS
Sbjct:  150 GDEFKGKEGTVGRSVIEGKTLGIYFSAHWCGPCRGFTPTLAKVYNKLKEKGQNNFEVIFVSGDKSDSQFEEYYGEMPWLAIPYGDKRIDQ--LNQRFEVNGIPHLVILNPDGTVLNASARGKIDADENAENFPWAPEPMEDLGVTAECMGSDINEKPSLVLFMEGVDDLQQDEAWAAGLAVAREFAARGGGDGPAL-----LFFGARGGGRIPPQVRRMTGL--PEQEEKISMVVLDIPDSGGYYKSDAEEINEQTVRDFAENY---KTLATRQQLS 414          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: D8LC01_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC01_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.590e-53
Identity = 109/284 (38.38%), Postives = 166/284 (58.45%), Query Frame = 3
Query:   63 MLGTGDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRA-AGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSD---ASEVTPETLAAFVGAFNDGKRGLTRKQLS 902
            ++GT + V   G       + GK+LALYFSAHWCPPCR FTP LV+ Y+ ++  AG DD EF+F+SSD+ +AQFD+Y   MPW ++P+   + + AL+TR  V GIP+L T+  DG V+N  A+GAA+ D  G  FPW P+ + +L + ++ NG  + + P+L+ F+E CDD++Q+E ++ AL P A A              V ++F       +  +VR +C L   +     QM+I+++   GAY++     ++ V   T+  FV A+  G   L R QLS
Sbjct:  149 LIGT-EFVTKPGTLAGEEVVRGKTLALYFSAHWCPPCRAFTPRLVQTYKDLKKRAGSDDVEFLFVSSDKDQAQFDDYFREMPWAAIPFGDVNRRRALATRLGVRGIPTLTTIDRDGVVINQTAKGAAIADAKGLEFPWWPKAVEDLSVNSQSNGFHVQEMPSLIVFMEACDDVDQKE-VEEALLPIATAEAEAAKANGGQP--VLIFFTVKSEASLPTQVRNVCDL--KTVPDSPQMIIVNIQGNGAYHLPQGGISAPVNATTIRDFVEAYKSGA--LERFQLS 424          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A7S0MU66_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MU66_9CHLO)

HSP 1 Score: 187 bits (474), Expect = 3.870e-51
Identity = 121/285 (42.46%), Postives = 162/285 (56.84%), Query Frame = 3
Query:   54 ILAMLGTGDLVGPKGNTVPISSL--AGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLE-GCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQL 899
            I  +LG+ +LV   GN V + SL  AG  +ALYFSAHWC PCR FTP LVK Y A++AAG+  FE +F+SSDR EA F EY  TMPWL+LP+ KR+ K  LS+   V GIP+L+ + P   V+N   RG    DP GA FPW P+ +S ++   E     +N  P L+  +E   DD +  EA   AL   AE A                + +A  +GG+ QR+R +  LG A A    +M++LDLPD GAYY  + + VT E +AA +  +  G   LT+  L
Sbjct:  141 IADVLGS-ELVSSGGNKVSVMSLKEAGTYIALYFSAHWCGPCRGFTPELVKTYNALKAAGKP-FEIVFVSSDRDEASFAEYFGTMPWLALPFDKREAKAELSSLLEVEGIPTLVMLDPSLKVLNRDGRGRVGSDPKGAEFPWAPRKVSPVDEVVE----ELNSTPTLLVLMEEAADDWDDLEA---ALEAVAEEALGSVPEEEDPPFT---FAHAQETGGIAQRIRQLLKLGKAGATP--EMVLLDLPDDGAYYKHEGA-VTKEAMAAMLQGYKAGS--LTKLSL 408          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A7S0E2L2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E2L2_9EUKA)

HSP 1 Score: 181 bits (459), Expect = 5.800e-49
Identity = 116/271 (42.80%), Postives = 160/271 (59.04%), Query Frame = 3
Query:   96 GNTVPISSLAG--KSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITV-APDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQL 899
            G TV +S+L G  K + LYFSAHWCPPC+ FTP LV+ Y+ ++AAG++ FE +F+SSD+   QF EY ATMPWL++P   +  K ALSTRF V GIP+L+ V    G  +NA  RGA   DP G  FPW P+ L+  +M +  +GL  ND   +   +EG    E + A+  A+   AEAA              +L+F A  +G V  +VR +  LG A+A    Q+ ILD+PD G +YV +   V  +++A+FV  +  G  GL RKQL
Sbjct:  160 GETVELSALRGEGKVVGLYFSAHWCPPCKAFTPLLVETYKKVKAAGKE-FEVVFVSSDKDMGQFQEYFATMPWLAIPPGDK-RKAALSTRFEVEGIPALVLVDGATGETINAKGRGAVGGDPEGEEFPWRPKALN--DMASGADGL--NDEACVCVMMEGAP-AESQAALAAAMGVVAEAAKAAGGE--------ELYFVARAAGEVADQVRKLTKLGDAAA--APQLAILDIPDEGGFYVYEGM-VDADSIASFVAKYKAG--GLERKQL 410          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: R1C0K2_EMIHU (Uncharacterized protein n=4 Tax=Eukaryota TaxID=2759 RepID=R1C0K2_EMIHU)

HSP 1 Score: 181 bits (458), Expect = 8.110e-49
Identity = 124/276 (44.93%), Postives = 160/276 (57.97%), Query Frame = 3
Query:   96 GNTVPISSLAG--KSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMP--WLSLPYAKRDEKTALSTRFRVTGIPSLITV-APDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGS--GGVVQRVRTMCGLG-AASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQL 899
            G+   +S L G  K + LYFSAHWCPPCR FTP LVK    ++AAG+  FE IF+SSDR +  F EY  +M   +L++P      K  LS+ F V GIP+L+TV    G  +N  ARGA   DP G AFPW P+P+  ++    C+G  IND  +L   LEGC  +E ++A   A  P AEAA              +L F+AA    GG V ++R M  LG A SA A   M++LD+PD GAYYVSDA+E T  T+ AF+ A+  G   L RKQL
Sbjct:  155 GDAAEVSQLKGEGKVIVLYFSAHWCPPCRGFTPELVKTVGKLKAAGKA-FEIIFVSSDRDQKSFQEYFGSMGPHFLAIPQGD-PRKAKLSSFFGVEGIPTLVTVDGATGATINGNARGACGGDPDGLAFPWAPKPV--VDFADGCDG--INDTLSLCLLLEGCG-LEVQQAAIAAATPLAEAAKASQE---------ELCFFAATKVEGGPVSQIRQMTKLGDAGSAPA---MILLDIPDEGAYYVSDATEATATTIQAFLAAYKAGT--LDRKQL 409          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: F0YDG6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDG6_AURAN)

HSP 1 Score: 179 bits (455), Expect = 5.320e-48
Identity = 125/293 (42.66%), Postives = 166/293 (56.66%), Query Frame = 3
Query:    9 PPRLSIERDTMASNDILAMLGTGDLVGPKGNTVPISSLAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATM--PWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGT-----VVNAGARGAAMEDPTGAAFP--WPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGA 860
            PP L   R+T+A    L  L T    GPK  TV ++ +AG  L +YFSAHWCPPCR FTP LV  +  ++AA   D   +F+SSD+ EA+FD Y A M   W +LPYA RD+K ALS  F V+GIPSL+ ++  G      VV   ARG   E      FP  W P+P ++L    ECNG  +N+  +LV   +G DD     A   AL+ AA  A               L+F+A  + G V +VR +CGL AA A    ++L+LD+PD GAYYV+DA+ VT + +AAF+ A
Sbjct:  173 PPTL---RETLAG---LPPLATKK--GPK--TVEVADVAGP-LLVYFSAHWCPPCRGFTPQLVAFFSELKAA-HPDASIVFVSSDKGEAEFDAYFAEMGDDWYALPYAARDDKAALSKHFDVSGIPSLVLLSAPGADGNRDVVTTSARGLVAEAVV-EGFPESWKPKPYADLSKGVECNGSDVNETRSLVVLADGMDDSAGAVA---ALKEAAAKAEAGRSGDVDA-----LYFFAPKTEGPVAQVRKLCGLPAA-APKEPRLLLLDIPDGGAYYVADAAAVTADAIAAFLAA 443          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A7S0YPF4_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YPF4_9CRYP)

HSP 1 Score: 177 bits (450), Expect = 1.510e-47
Identity = 112/277 (40.43%), Postives = 150/277 (54.15%), Query Frame = 3
Query:   81 LVGPKGNTVPISS-LAGKSLALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITVAPDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGG--VVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQLS 902
            LV P G  V  ++ L GK+ A+YFSAHWC PC+ FTP L   YEA++A G DDFE +F+S+DRSE  F +Y  TMPWL++P+  RD +  LS  F V GIP+L  + PDG V NA    A   DP  A FPW  + ++ LE   +  G  +ND P L+ F  G D         GALR   +                ++ F A G GG  +  +VR +C LG      G Q+++LD+PD G +YV +   VT E +  F+  +   K  L RKQLS
Sbjct:  162 LVKPDGTEVDAAAALGGKTYAVYFSAHWCGPCKGFTPKLAAAYEALKARG-DDFEVVFVSADRSEKAFADYFGTMPWLAVPFDDRDREQELSALFEVEGIPTLCIIGPDGKVSNADGVQAVAGDPECAKFPWGKEDVTALE---DAGGF-LNDTPCLILF--GGDQ--------GALRAPGKEERARASAAGDDGDVEEVAFVAGGDGGGDLAGQVRKLCQLGD-QVGGGGQLVLLDIPDEGGFYVHEGGAVTEEAVRGFLADYRAKK--LARKQLS 420          
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Match: A0A7S2FUN0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FUN0_9EUKA)

HSP 1 Score: 175 bits (444), Expect = 1.090e-46
Identity = 108/281 (38.43%), Postives = 153/281 (54.45%), Query Frame = 3
Query:   66 LGTGDLVGPKGNTVPISSLAGKS--LALYFSAHWCPPCRMFTPALVKVYEAMRAAGRDDFEFIFLSSDRSEAQFDEYRATMPWLSLPYAKRDEKTALSTRFRVTGIPSLITV-APDGTVVNAGARGAAMEDPTGAAFPWPPQPLSNLEMTTECNGLTINDAPALVAFLEGCDDIEQREAIDGALRPAAEAAXXXXXXXXXXXXXVQLWFYAAGSGGVVQRVRTMCGLGAASADAGAQMLILDLPDRGAYYVSDASEVTPETLAAFVGAFNDGKRGLTRKQL 899
            LGT  L G +G TV I+ +  +S  + LYFSAHWCPPCR FTP LVK YE    A   D E IF+SSDR +  F EY  TMPWL++P   +  K  LS  F V+GIPS + +    G  +   AR     DP G  FPW P+ L+N+      +   +N+  A+   L+GC +   + A++  L P AEA+               LW YA  + G V+++R +  L ++      QM++LD+PD G +Y S  SE++ ET+ AF+ A+    + L R+QL
Sbjct:  159 LGTEFLSGTEGETVDIAEVKVRSKYIGLYFSAHWCPPCRSFTPTLVKAYEQHLKA--KDLEIIFVSSDRDQKAFSEYFGTMPWLAIPNGDK-RKDQLSKFFEVSGIPSFVLIDVATGATITDNARSNVSSDPEGKDFPWHPKALNNVSSGEGID--KVNEEMAICVLLDGCSETAVKAAVE-VLEPLAEASKAKGDEL--------LWLYAPKTEGPVEQIRKLTKLTSSDKP---QMVLLDIPDEGGFYTSQTSEISAETVTAFLAAYK--AKELERQQL 420          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z5J6_9STRA1.840e-190100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFS2_9STRA1.210e-6848.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0L8_9STRA4.640e-6345.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z906_9STRA2.240e-6152.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C930_9STRA2.690e-5944.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C7V9_9STRA1.800e-5752.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZB26_9STRA9.040e-4537.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8N6_9STRA8.050e-2530.50SNF2 family N-terminal domain-containing protein n... [more]
back to top
BLAST of jgi.p|Trimin1|348056 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8S9_9STRA2.440e-191100.00Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A8J5XBT9_DIALT7.350e-6342.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6V1NWZ1_HETAK1.120e-6144.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LC01_ECTSI2.590e-5338.38Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S0MU66_9CHLO3.870e-5142.46Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S0E2L2_9EUKA5.800e-4942.80Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R1C0K2_EMIHU8.110e-4944.93Uncharacterized protein n=4 Tax=Eukaryota TaxID=27... [more]
F0YDG6_AURAN5.320e-4842.66Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0YPF4_9CRYP1.510e-4740.43Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2FUN0_9EUKA1.090e-4638.43Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:363061..367221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348056|estExt_Genemark1.C_Ctg_190043
Hectar predicted targeting categorysignal peptide
TranscriptId348378
TrackFilteredModels1
ProteinId348056
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348056gene_5488Tribonema minus UTEX_B_3156 geneContig_19 363061..367221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5488_2exon_5488_2Tribonema minus UTEX_B_3156 exonContig_19 363061..363978 -
exon_5488_1exon_5488_1Tribonema minus UTEX_B_3156 exonContig_19 367067..367221 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5488UTR3_5488Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 363061..363263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5488CDS_5488Tribonema minus UTEX_B_3156 CDSContig_19 367067..367221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348056Trimin1|348056|estExt_Genemark1.C_Ctg_190043Tribonema minus UTEX_B_3156 polypeptideContig_19 363264..367221 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Trimin1|348056|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1073bp|location=Sequence derived from alignment at Contig_19:363061..367221- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTCAGCAAGTGCATCGGCGCGCTCAGCCTCTTGCTGTGCACATC
AAGCAGCAATGCCGTGCCTCACGCCGAGCTCAAGGTTGCTGATGAGGTGC
ACTCCCGGTCCGGTTCGGATGTCCATTTCAAGAAGCTTGCAGCCAAGGGT
GACCGGTATACGGTCAAGGACAAGACCGTGCACATGAGCATCGAGAAAGG
TGATGTCAACGGCTCCAACATCTGCAGTGGCAACTTTGTGGCCATGAGTG
TTCGGCTCGAACGCTTCAGTTACGACAGCAGCGAGCCCGATAACAGCTTC
TCTGGGAGCTCTGTCAGGGTCTCGTTCGACAAGGGAACTTATCGCGACTG
CACTGATGCAGAGCTGTCCACAACCAGCCTCTCCTACTCCAGCTCGAACC
CCTGCTGCAGCAACACCACGTCGCTCTACGGCTACGAGAACATCGATTCT
GGCGTGGGCACCTTCAAGCTCGGCTTGACATCACAGAACCTCATCACCGC
AAAGGCCACCGTCACGGTCCCACTGTACGACTCCTCCTCGAGCTCGACGT
CCAGCAGCGGTACTTCGCCGCCGCCCGTTAAAGCCGCCACGGCAAAGGTG
ACGCTCAAGATCGACTGCACCGACTCCCTCAACTATCAAGTCACCTTGAC
CGGCGACCGCTGCGTCCGCGGCGATTGCGTCAGCAGCAGTGCCGAACAAA
ACGACTACTGGTGCACCACCAAGTTGGACGGCGCCGCCCTCACCGGCACC
ATCGGGGTGCAGGGCAAGGGCCTCAACCAGCCAAAAATCGACCTGGCGAA
TCTGCCCGCCGGCTACACTCTGGTCGCGCGCACAGACTTCTACACCGAGG
ACGGCAAGACGATCGCTTGAGTATCAACTTATAAGCAGATCTACGCCGAC
GACTGGTGCGCCTGCCAGTGTGCCGGTGGCACTGGCAGGATGTCCGCACA
GTCAAGTTGCTTCAAGTTTTAGAAGTTAGTGGCACGCCGTGACTGGCAGG
GCAGGTTCTTAATAGCTTGAGCTCAATTGATGCAGCCTCCGAGTTGTCTG
ACTGCAAGAGCATGCGTTGAGGG
back to top

protein sequence of jgi.p|Trimin1|348056

>Trimin1|348056|estExt_Genemark1.C_Ctg_190043 ID=Trimin1|348056|estExt_Genemark1.C_Ctg_190043|Name=jgi.p|Trimin1|348056|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp
MGFSKCIGALSLLLCTSSSNAVPHAELKVADEVHSRSGSDVHFKKLAAKG
DRYTVKDKTVHMSIEKGDVNGSNICSGNFVAMSVRLERFSYDSSEPDNSF
SGSSVRVSFDKGTYRDCTDAELSTTSLSYSSSNPCCSNTTSLYGYENIDS
GVGTFKLGLTSQNLITAKATVTVPLYDSSSSSTSSSGTSPPPVKAATAKV
TLKIDCTDSLNYQVTLTGDRCVRGDCVSSSAEQNDYWCTTKLDGAALTGT
IGVQGKGLNQPKIDLANLPAGYTLVARTDFYTEDGKTIA*
back to top

mRNA from alignment at Contig_19:363061..367221-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Trimin1|348056|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4161bp|location=Sequence derived from alignment at Contig_19:363061..367221- (Tribonema minus UTEX_B_3156 )
ATGGGCTTCAGCAAGTGCATCGGCGCGCTCAGCCTCTTGCTGTGCACATC AAGCAGCAATGCCGTGCCTCACGCCGAGCTCAAGGTTGCTGATGAGGTGC ACTCCCGGTCCGGTTCGGATGTCCATTTCAAGAAGCTTGCAGCCAAGGGT GACCGGTAAGTGCATTCAGATATGATGGTCCTGTACGGCATTGTTACTGT AGTACACCAGAGATCCTGCGGTTGGCAATATGCAAGCCGACTGGCAATGC ACTGCTGCAGCGTAAGGCTTGTAGGTCATGGCCGATCAAATGGCCCAGTG GGCCGGTGACCGTTGAGACGCAGACACAGCGCTTCACACAACACAATGTC ATGCAGACTGACGATCGCGTAATACTATCTGCGCTGAGCTTCCTGGAGGC TCGATGTGGCAGACACAAACGGCCACAATCACAGATGACTGTGACTGGCA GCAACGTCAAAGCAAGATTGAACTTCAGATTCTGAATCAGCGCAGGCCCA GGGCCTGTCGTAACTAAAGCCTGAAACCTTGCGGATTGCAGACTCTGAGT GCGTTGCCTTAAGACGACAAGGGCAAATCCCCATACATCATCTGATTCAC CAGCAAGTTGCAGCATCTGATTCACCAGCATTTCGGAAGGCTGATTCAAA ATCTGCCGGACCGGCCCTGGGTCTTCCAGGACCTGGTCCTGAAGAACAGC ATCGATACTAGTAATGTAAGCATCGATACTAGTAATGTGAGCATCGATAC TAGTGATGTAACTCAAATCGAAGCCCCAACATTACCATTTACATTATTTA CATGTGGAACTGCTAGCTGCCGCAGTGCTTGCCACGTCACTGTATCGATA ATTAGTAATACTCAGTCTAATAGTATTCAAGAAGCCAAAGAAAGTTTAAC CCACTGCCGCAGCCTGATTGGCGTGGAAACGACCCGGACGCAGAAAAGCG ACGCAAACTTTTTGAAAGGTTAAAGTAGCCTTTCTTGTGTTGTGCCAAAA CTGTGAACTGCACCACTGGCCCAATTTATGATTGCATTCACAGAAAACGA ACGATTCGAATGACCTACTTCAACTTTAAATTGAAGTTGATTACCAGGAC ATGGGTAACTTCAACAGCCCAACTTTAACTGATGCTCAGATTTATTAGCT CATCTCTTTGAGCTCCAACACTTTTTTGAACTTTTGAAACTTCAATATCA ACAAACTCTCCTCAGCGCCGACCACAACAATAAGGGGTTATGGTGACTCA ACATCATAGAGATACTTCAACTGCGTCGTTTGGGCTGATCATTATTCAAG TTGTTGGCTGTAAACCCATGTCGCTTTCTAGCTTCTGAGGTCGCTTTCTT GTCAATTAAGGGCTCAAGGAGGGCCCGGCCGACAAATCACTGCAGTCAGT ACTGATGGCACGACAGGCCTGACAGTCACTGTGTTGAAAGTAATATTTCA ATTTGACACTCAGAGTGACTTCTCAGTGGGGGCTATTTTCGAGTTGAACA AGTGTATGTAGAATATGCTGATCGGACGTACCTTGCGCTAGGTATCTGCA GGTGTCAGCGGTAAATATGTCTGAGTCAGACTCAGTGGCCGCGCTCAGTC TGTTAGACAATTTGAACTTCGATTGAATCTCTGAGTCAGTGCAGCGTTCA TCGATTGCACATGTGTCACACTGGATACAAGCACCGAATTGAATTTGATT TGTAAATCGAATGCATGCAGCTGAAACCATTGGCAATTCAGTGAATTACT TCGGTAGCCACTCCGGGAATTCTCATGTGACATGAGAATTCTTGAGGTTC GGTCATTCAATCTGCTGTTTAAAGGACTAGATTAAATTCAAAAGCTGAGG TGCTCACTGCACTGTGCGCCCAAGTGTTGTCGATACAACGCACCTCAGTA CCTGTACGAGACACACTGTCATCACACTGTGACAGTCGTACAGGTACCGA GATGCGCTGTATCGACGACACATCTGGGTGCACAGCACCTGGTTGTGGTG ATTTTGAAGTATCACCAAGTGTTTGCACACAGTGTTTACACACAAAAGCT GCAACCTTTGTAGCTAAGCCTGAGGGTCAGGGTTCAACCTGGCTGAGTAG AAGCCCCAACAGGTCCATACCCCCCCTGTCAGATGTAACTGCCAACTGCA AGTCTTGCGACCTGTGCTTTCAGAGCACGGAAGCAAGCCTCCTAACACAC ACACTTTGGCTGAGTGGTGCTGTGAGTGTTAGTGCTCTGCTACAGCAACT AGTAGTGGCTACTAGTACTAGTAGCTGCCAGTGTCTCAGAGATGATCGTA TTATAGCTATAATAAGTAATAGCTTTTAAGTTAGGCTGGCACAAGCATGC GCTGACCGTCAGGTACTGCAGTGCTGCTGCATCTAGCAGCTGCCAGTGGT CACAAATTGAATGTTATAACAGTTTTTATAGTTCGTAAACTATCGGAACG GATTCCACAGAGTTGCACGCAGGGGGACATCACGTTCAACAAATTGCACT CACTGAGAATTTGTCTCGGAGCCTCAGAGTAGGAAAGAGCATTGCCTGCC AGTGCCCCGGGCCATGAACGTTCCGTTGGGCGGCGGGCAGCCAGGCTGAC AGTGTCAGTGAGCCTACTAGTAGTATTGCCACACGTTAGAGCCTTGTGAG GAGTACACGATGGCATCTGACTCACCTGTTGCACTGTTACAGTAGTGCAG TATCATAATGCATTATATGCATTGTATATGCATGATGGAAACATCTAGCG TGATGATTCAGTATGCATATGCATGATGCAAACATCCAGCGTGATGATTC TGAAACATCCGATTCGGATTCCATTTACTGGTCACTGCGGTACTTAGTGT AGTAGTAGTTGCCAACAGTCACGGTGACTACTACTAGCAGAATCTGGCAG TCGGACCCACTAGCACTGGCCCAGGCTCAGTGAGTCACTGGGAGTCACGA TGGCCGCCTGTCGCAGCGGGCCCTCAGGCTGCCAGTGGTCTCGGAGATTG CCATCATGACCCCAGGGAGTTTGTCAAGCTTTAGCCTGTGCTGCACTGGC AGCTGCTCTTTGCAAACCTTCAAGAAGTTCGGAGTACACAACTTCACAGA AGTTCGGGTTGAACATGTTGATCATGCCGCAAATAAGAAACACCACTGTG GCACATCATCATGTAGCTGTGCACTGTGAAATTCAATCTTGATCTGATGT AGATTTGCTGACTGTCCGCCCGCGTGCGGTCCCGCACCTGCAGGTATACG GTCAAGGACAAGACCGTGCACATGAGCATCGAGAAAGGTGATGTCAACGG CTCCAACATCTGCAGTGGCAACTTTGTGGCCATGAGTGTTCGGCTCGAAC GCTTCAGTTACGACAGCAGCGAGCCCGATAACAGCTTCTCTGGGAGCTCT GTCAGGGTCTCGTTCGACAAGGGAACTTATCGCGACTGCACTGATGCAGA GCTGTCCACAACCAGCCTCTCCTACTCCAGCTCGAACCCCTGCTGCAGCA ACACCACGTCGCTCTACGGCTACGAGAACATCGATTCTGGCGTGGGCACC TTCAAGCTCGGCTTGACATCACAGAACCTCATCACCGCAAAGGCCACCGT CACGGTCCCACTGTACGACTCCTCCTCGAGCTCGACGTCCAGCAGCGGTA CTTCGCCGCCGCCCGTTAAAGCCGCCACGGCAAAGGTGACGCTCAAGATC GACTGCACCGACTCCCTCAACTATCAAGTCACCTTGACCGGCGACCGCTG CGTCCGCGGCGATTGCGTCAGCAGCAGTGCCGAACAAAACGACTACTGGT GCACCACCAAGTTGGACGGCGCCGCCCTCACCGGCACCATCGGGGTGCAG GGCAAGGGCCTCAACCAGCCAAAAATCGACCTGGCGAATCTGCCCGCCGG CTACACTCTGGTCGCGCGCACAGACTTCTACACCGAGGACGGCAAGACGA TCGCTTGAGTATCAACTTATAAGCAGATCTACGCCGACGACTGGTGCGCC TGCCAGTGTGCCGGTGGCACTGGCAGGATGTCCGCACAGTCAAGTTGCTT CAAGTTTTAGAAGTTAGTGGCACGCCGTGACTGGCAGGGCAGGTTCTTAA TAGCTTGAGCTCAATTGATGCAGCCTCCGAGTTGTCTGACTGCAAGAGCA TGCGTTGAGGG
back to top

Coding sequence (CDS) from alignment at Contig_19:363061..367221-

>mRNA_5488 ID=mRNA_5488|Name=jgi.p|Trimin1|348056|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_19:363061..367221- (Tribonema minus UTEX_B_3156 )
ATGGGCTTCAGCAAGTGCATCGGCGCGCTCAGCCTCTTGCTGTGCACATC
AAGCAGCAATGCCGTGCCTCACGCCGAGCTCAAGGTTGCTGATGAGGTGC
ACTCCCGGTCCGGTTCGGATGTCCATTTCAAGAAGCTTGCAGCCAAGGGT
GACCGGTATACGGTCAAGGACAAGACCGTGCACATGAGCATCGAGAAAGG
TGATGTCAACGGCTCCAACATCTGCAGTGGCAACTTTGTGGCCATGAGTG
TTCGGCTCGAACGCTTCAGTTACGACAGCAGCGAGCCCGATAACAGCTTC
TCTGGGAGCTCTGTCAGGGTCTCGTTCGACAAGGGAACTTATCGCGACTG
CACTGATGCAGAGCTGTCCACAACCAGCCTCTCCTACTCCAGCTCGAACC
CCTGCTGCAGCAACACCACGTCGCTCTACGGCTACGAGAACATCGATTCT
GGCGTGGGCACCTTCAAGCTCGGCTTGACATCACAGAACCTCATCACCGC
AAAGGCCACCGTCACGGTCCCACTGTACGACTCCTCCTCGAGCTCGACGT
CCAGCAGCGGTACTTCGCCGCCGCCCGTTAAAGCCGCCACGGCAAAGGTG
ACGCTCAAGATCGACTGCACCGACTCCCTCAACTATCAAGTCACCTTGAC
CGGCGACCGCTGCGTCCGCGGCGATTGCGTCAGCAGCAGTGCCGAACAAA
ACGACTACTGGTGCACCACCAAGTTGGACGGCGCCGCCCTCACCGGCACC
ATCGGGGTGCAGGGCAAGGGCCTCAACCAGCCAAAAATCGACCTGGCGAA
TCTGCCCGCCGGCTACACTCTGGTCGCGCGCACAGACTTCTACACCGAGG
ACGGCAAGACGATCGCTTGA
back to top