mRNA_5482 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161987
Unique NamemRNA_5482
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A835Z707_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z707_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.360e-59
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKAEPPPGGAQLAGQVYIAFKARLNKFLGTKSLGLRLHMVQNTQNRNNS 279
            MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKAEPPPGGAQLAGQVYIAFKARLNKFLGTKSLGLRLHMVQNTQNRNNS
Sbjct:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKAEPPPGGAQLAGQVYIAFKARLNKFLGTKSLGLRLHMVQNTQNRNNS 93
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BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A835Z409_9STRA (RNA cytidine acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z409_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.270e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA 141
            MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA
Sbjct:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA 47
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BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A0L0FLT5_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLT5_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 2.320e-18
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA 141
            MVRKK+DSRVR L+ENGVKT  RSFF+LVGDHG++Q+VNLHYILSKA
Sbjct:    1 MVRKKIDSRVRTLVENGVKTGHRSFFVLVGDHGRNQIVNLHYILSKA 47
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BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A7S4MMR4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMR4_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 4.040e-16
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   10 KKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA 141
            KKVDSRVR LIENGVKTN RSFF+++GD G+DQVVNLHYILSK+
Sbjct:    1 KKVDSRVRTLIENGVKTNQRSFFIMIGDRGRDQVVNLHYILSKS 44
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BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A024U7Z3_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7Z3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.390e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSK 138
            MV+KKVD+RVR LIEN VKTN RSFF+LVGDHGKDQVVNLHYILSK
Sbjct:    1 MVKKKVDARVRTLIENCVKTNHRSFFVLVGDHGKDQVVNLHYILSK 46
[Close]
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A6G0X9Q5_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9Q5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.550e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSK 138
            MV+KKVD+RVR LIEN VKTN RSFF+LVGDHGKDQVVNLHYILSK
Sbjct:    1 MVKKKVDARVRTLIENCVKTNHRSFFVLVGDHGKDQVVNLHYILSK 46
[Close]
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A425CW08_9STRA (RNA cytidine acetyltransferase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A425CW08_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.550e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSK 138
            MV+KKVD+RVR LIEN VKTN RSFF+LVGDHGKDQVVNLHYILSK
Sbjct:    1 MVKKKVDARVRTLIENCVKTNHRSFFVLVGDHGKDQVVNLHYILSK 46
[Close]
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A418D3D3_9STRA (RNA cytidine acetyltransferase n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418D3D3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.640e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSK 138
            MV+KKVD+RVR LIEN VKTN RSFF+LVGDHGKDQVVNLHYILSK
Sbjct:  554 MVKKKVDARVRTLIENCVKTNHRSFFVLVGDHGKDQVVNLHYILSK 599
[Close]
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A8J4Q8V2_9MYCE (RNA cytidine acetyltransferase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q8V2_9MYCE)

HSP 1 Score: 79.0 bits (193), Expect = 4.240e-15
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKA 141
            MVRKKVDSR+R LIENGV TN RSFF++VGD+GKDQ+ NLHYILSK+
Sbjct:    1 MVRKKVDSRIRTLIENGVNTNHRSFFVIVGDNGKDQIPNLHYILSKS 47
[Close]
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Match: A0A485L0U8_9STRA (RNA cytidine acetyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0U8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.240e-15
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSK 138
            MV+KKVD+RVR LIEN VKTN RSF +LVGDHGKDQVVNLHYILSK
Sbjct:    1 MVKKKVDARVRTLIENCVKTNHRSFIVLVGDHGKDQVVNLHYILSK 46
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z707_9STRA5.360e-59100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z409_9STRA2.270e-20100.00RNA cytidine acetyltransferase n=1 Tax=Tribonema m... [more]
A0A0L0FLT5_9EUKA2.320e-1880.85Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A7S4MMR4_9EUKA4.040e-1681.82Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A024U7Z3_9STRA6.390e-1686.96RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]
A0A6G0X9Q5_9STRA6.550e-1686.96RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]
A0A425CW08_9STRA6.550e-1686.96RNA cytidine acetyltransferase n=5 Tax=Aphanomyces... [more]
A0A418D3D3_9STRA6.640e-1686.96RNA cytidine acetyltransferase n=7 Tax=Aphanomyces... [more]
A0A8J4Q8V2_9MYCE4.240e-1578.72RNA cytidine acetyltransferase n=1 Tax=Polysphondy... [more]
A0A485L0U8_9STRA4.240e-1584.78RNA cytidine acetyltransferase n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:312202..312483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161987|e_gw1.19.1.1
BRITEko00000,ko00001,ko01000,ko03009
KEGG Pathwayko03008,map03008
KEGG koko:K14521
GOsGO:0000049,GO:0000154,GO:0000166,GO:0002097,GO:0002101,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0010639,GO:0016043,GO:0016070,GO:0016072,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022613,GO:0030490,GO:0030496,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051391,GO:0051392,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1904356,GO:1904357,GO:1904812,GO:1990882,GO:1990883,GO:1990884,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Preferred nameNAT10
DescriptiontRNA N-acetyltransferase activity
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1444@1|root,KOG2036@2759|Eukaryota
Evalue2.26e-17
Seed ortholog2880.D7FZ70
Hectar predicted targeting categoryother localisation
TranscriptId162309
TrackFilteredModels1
ProteinId161987
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161987gene_5482Tribonema minus UTEX_B_3156 geneContig_19 312202..312483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5482_1exon_5482_1Tribonema minus UTEX_B_3156 exonContig_19 312202..312483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5482CDS_5482Tribonema minus UTEX_B_3156 CDSContig_19 312202..312483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161987Trimin1|161987|e_gw1.19.1.1Tribonema minus UTEX_B_3156 polypeptideContig_19 312202..312483 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5482 ID=mRNA_5482|Name=jgi.p|Trimin1|161987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_19:312202..312483- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCAAGAAGGTGGACTCTCGCGTGAGGGCGCTGATTGAGAATGG
GGTAAAAACCAACACCAGGAGCTTCTTTCTGCTGGTGGGAGACCATGGCA
AGGATCAGGTCGTCAACCTGCACTACATCCTCAGCAAAGCTGAACCCCCC
CCGGGGGGGGCACAACTGGCAGGACAGGTGTATATTGCATTCAAAGCCCG
CCTAAACAAATTCCTAGGGACGAAGTCACTAGGCCTCCGTTTGCACATGG
TGCAAAACACCCAAAATCGCAATAACTCCTGA
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protein sequence of jgi.p|Trimin1|161987

>Trimin1|161987|e_gw1.19.1.1 ID=Trimin1|161987|e_gw1.19.1.1|Name=jgi.p|Trimin1|161987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
MVRKKVDSRVRALIENGVKTNTRSFFLLVGDHGKDQVVNLHYILSKAEPP
PGGAQLAGQVYIAFKARLNKFLGTKSLGLRLHMVQNTQNRNNS*
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mRNA from alignment at Contig_19:312202..312483-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5482 ID=mRNA_5482|Name=jgi.p|Trimin1|161987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_19:312202..312483- (Tribonema minus UTEX_B_3156 )
ATGGTGCGCAAGAAGGTGGACTCTCGCGTGAGGGCGCTGATTGAGAATGG
GGTAAAAACCAACACCAGGAGCTTCTTTCTGCTGGTGGGAGACCATGGCA
AGGATCAGGTCGTCAACCTGCACTACATCCTCAGCAAAGCTGAACCCCCC
CCGGGGGGGGCACAACTGGCAGGACAGGTGTATATTGCATTCAAAGCCCG
CCTAAACAAATTCCTAGGGACGAAGTCACTAGGCCTCCGTTTGCACATGG
TGCAAAACACCCAAAATCGCAATAACTCCTGA
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Coding sequence (CDS) from alignment at Contig_19:312202..312483-

>mRNA_5482 ID=mRNA_5482|Name=jgi.p|Trimin1|161987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_19:312202..312483- (Tribonema minus UTEX_B_3156 )
ATGGTGCGCAAGAAGGTGGACTCTCGCGTGAGGGCGCTGATTGAGAATGG
GGTAAAAACCAACACCAGGAGCTTCTTTCTGCTGGTGGGAGACCATGGCA
AGGATCAGGTCGTCAACCTGCACTACATCCTCAGCAAAGCTGAACCCCCC
CCGGGGGGGGCACAACTGGCAGGACAGGTGTATATTGCATTCAAAGCCCG
CCTAAACAAATTCCTAGGGACGAAGTCACTAGGCCTCCGTTTGCACATGG
TGCAAAACACCCAAAATCGCAATAACTCCTGA
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