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Homology
BLAST of jgi.p|Trimin1|147988 vs. uniprot
Match: A0A835Z3C8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C8_9STRA) HSP 1 Score: 677 bits (1746), Expect = 2.040e-245 Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 1
Query: 1 EFGAQDFLEPGRQFVLEGDLIKITRGGRKEHKFVLFNDKLVYGEEKGLLMRRTGMFANVVSGNTKRQYRKAYDFPLSRGLYVVNDVGGAYASARSGXXXXXAAEGVLGDTGFMFITPDKSFVVHAASPAEKDAWVQALRRVMADLTAKGDSRALKVDMDLSDKVKPAKSGKSISCDIFVWVIRDGKTMRQGFSLPPSALSAPFGVLSYSELVQRGAQVDPSPTRAGLPDDDLGFGLEWDAPPALQLEVLPDPFDDDYDDPLGGSRLQVEVSLQPGDRLGLRLRDIQGGGVLVMGFITRGCAAQVAGVCQGDRVTHIDGTGPLLSAAEAXXXXXXXLDRCGGGGVLKLTLRRGF 1059
EFGAQDFLEPGRQFVLEGDLIKITRGGRKEHKFVLFNDKLVYGEEKGLLMRRTGMFANVVSGNTKRQYRKAYDFPLSRGLYVVNDVGGAYASARSGXXXXXAAEGVLGDTGFMFITPDKSFVVHAASPAEKDAWVQALRRVMADLTAKGDSRALKVDMDLSDKVKPAKSGKSISCDIFVWVIRDGKTMRQGFSLPPSALSAPFGVLSYSELVQRGAQVDPSPTRAGLPDDDLGFGLEWDAPPALQLEVLPDPFDDDYDDPLGGSRLQVEVSLQPGDRLGLRLRDIQGGGVLVMGFITRGCAAQVAGVCQGDRVTHIDGTGPLLSAAEAXXXXXXXLDRCGGGGVLKLTLRRGF
Sbjct: 1 EFGAQDFLEPGRQFVLEGDLIKITRGGRKEHKFVLFNDKLVYGEEKGLLMRRTGMFANVVSGNTKRQYRKAYDFPLSRGLYVVNDVGGAYASARSGXXXXXAAEGVLGDTGFMFITPDKSFVVHAASPAEKDAWVQALRRVMADLTAKGDSRALKVDMDLSDKVKPAKSGKSISCDIFVWVIRDGKTMRQGFSLPPSALSAPFGVLSYSELVQRGAQVDPSPTRAGLPDDDLGFGLEWDAPPALQLEVLPDPFDDDYDDPLGGSRLQVEVSLQPGDRLGLRLRDIQGGGVLVMGFITRGCAAQVAGVCQGDRVTHIDGTGPLLSAAEAXXXXXXXLDRCGGGGVLKLTLRRGF 353
BLAST of jgi.p|Trimin1|147988 vs. uniprot
Match: A0A1E1XGQ0_9ACAR (Putative rho/rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XGQ0_9ACAR) HSP 1 Score: 55.8 bits (133), Expect = 9.020e-5 Identity = 41/139 (29.50%), Postives = 64/139 (46.04%), Query Frame = 1
Query: 16 DFLEPGRQFVLEGDLIKITRGGRKEHKFVLFNDKLVYGEEKGLLMRRTGMFANVVSGNTKRQYRKAYDFPLSRGLYVVNDVGGAYASARSGXXXXXAAEGVLGDTGFMFITPDKSFVVHAASPAEKDAWVQALRRVMAD 432
+ L+PGR F+ EG+L+K++R + FVLF+D L+Y LL G YR Y+ PLS G+ V+ Y + F T +SF++ A+SP E++ W+ AL + + D
Sbjct: 1343 EVLKPGRTFLKEGELMKVSRKEMQPRYFVLFSDSLLY-----LLPTPQGF------------YRVNYELPLS-GMKVMVPPQQDYQNE------------------FSVYTMKRSFILSASSPEEREEWISALTKAIED 1445
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|147988|gw1.19.143.1 |
Description | Rho guanyl-nucleotide exchange factor activity |
COG category | T |
Max annot lvl | 2759|Eukaryota |
EggNOG OGs | COG5422@1|root,KOG4424@2759|Eukaryota |
Evalue | 3.62e-22 |
Seed ortholog | 2880.D8LKY8 |
Hectar predicted targeting category | other localisation |
TranscriptId | 148310 |
Track | FilteredModels1 |
ProteinId | 147988 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5460 ID=mRNA_5460|Name=jgi.p|Trimin1|147988|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1059bp|location=Sequence derived from alignment at Contig_19:96491..101227+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GAGTTTGGTGCGCAAGACTTCCTGGAGCCCGGCCGGCAGTTTGTGCTGGA GGGCGACCTTATTAAGATCACACGCGGCGGCCGCAAAGAGCACAAGTTCG TGCTCTTCAATGACAAGCTCGTCTATGGCGAAGAGAAAGGCCTACTCATG CGCCGCACGGGCATGTTTGCCAACGTCGTCAGCGGCAACACCAAGCGCCA GTACCGCAAGGCCTACGACTTCCCCCTGAGCAGGGGGCTGTACGTGGTCA ACGACGTGGGGGGTGCGTATGCCAGCGCGCGTAGCGGGGGAGGGGGCGGG GGGGCAGCGGAGGGGGTTTTGGGGGACACGGGCTTCATGTTCATCACGCC GGATAAGAGTTTTGTCGTGCACGCTGCGTCGCCTGCGGAGAAGGACGCGT GGGTGCAGGCATTACGACGCGTGATGGCTGACCTGACGGCCAAGGGTGAC TCGCGCGCGCTCAAGGTCGACATGGATCTGTCAGACAAGGTCAAGCCCGC CAAAAGCGGCAAATCCATAAGCTGCGACATCTTCGTCTGGGTGATTCGCG ACGGGAAGACCATGCGCCAGGGGTTCTCCCTCCCCCCGTCCGCCCTGTCC GCCCCCTTTGGCGTCCTCTCGTACAGCGAGCTGGTCCAGAGGGGGGCGCA AGTGGACCCCTCCCCCACCCGCGCTGGCCTTCCTGATGACGATCTAGGGT TCGGTCTGGAGTGGGATGCGCCCCCCGCACTTCAACTTGAGGTGCTACCG GACCCCTTCGACGATGACTACGATGACCCCCTCGGGGGGTCACGACTTCA AGTTGAAGTTTCCCTTCAACCGGGCGACCGGCTGGGACTGCGCCTGCGGG ATATACAGGGGGGCGGCGTGCTGGTGATGGGGTTCATCACCAGGGGGTGC GCTGCGCAGGTTGCTGGCGTCTGCCAAGGCGACCGAGTCACCCATATCGA CGGCACTGGACCGCTATTATCAGCAGCAGAGGCGGCGGCCGCAGCAGCAG CAGCGCTCGACCGCTGCGGCGGTGGGGGAGTATTGAAGTTGACGCTCCGC AGGGGGTTC back to topprotein sequence of jgi.p|Trimin1|147988 >Trimin1|147988|gw1.19.143.1 ID=Trimin1|147988|gw1.19.143.1|Name=jgi.p|Trimin1|147988|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=353bp
EFGAQDFLEPGRQFVLEGDLIKITRGGRKEHKFVLFNDKLVYGEEKGLLM RRTGMFANVVSGNTKRQYRKAYDFPLSRGLYVVNDVGGAYASARSGGGGG GAAEGVLGDTGFMFITPDKSFVVHAASPAEKDAWVQALRRVMADLTAKGD SRALKVDMDLSDKVKPAKSGKSISCDIFVWVIRDGKTMRQGFSLPPSALS APFGVLSYSELVQRGAQVDPSPTRAGLPDDDLGFGLEWDAPPALQLEVLP DPFDDDYDDPLGGSRLQVEVSLQPGDRLGLRLRDIQGGGVLVMGFITRGC AAQVAGVCQGDRVTHIDGTGPLLSAAEAAAAAAAALDRCGGGGVLKLTLR RGF back to topmRNA from alignment at Contig_19:96491..101227+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5460 ID=mRNA_5460|Name=jgi.p|Trimin1|147988|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4737bp|location=Sequence derived from alignment at Contig_19:96491..101227+ (Tribonema minus UTEX_B_3156 ) GAGTTTGGTGCGCAAGACTTCCTGGAGCCCGGCCGGCAGTTTGTGCTGGA
GGGCGACCTTATTAAGGTGAGTCAGGCACCACTTAAGGTTAGGGTTAGGA
TTAGGGTTGGGTTAAAAGAACATGCCTTTGGTGCTGCAAAAAAGTGTGTG
TGTGTGGCGGGGACATTTCGGCCACCTCAGGGTTACGCTTAGAATTAGGG
TTAGAGGGTCTTCCACCAGGCCGTGTTCCTGCCAGGCCGGTGTGTGCGTG
TGTGTGTGGGTGAACGGGGGCAAGAACGATGCCAGTCGACAGAATGAGGG
GTCTTCCTTCTGCTTGTATGGGGTATGTATGCTTGTATGGGATACTCAAG
GTCGTTCCAAAACTCAAGGTCGTTCCAAAACGGTCATTGCTCTGGTCCAT
ATACCGCTAGACCTAGCAGTAGACGTAGGCGGTAGACCTAGAAGTACACG
CTGCAGTGTGGGTGCACGGGCGTCTGCAGTGGTGCGCTTTGTGACATGCA
CGTGCAGACAGTGCCGTGACGCAAACGCTAGCCCTAGCCCTGCGTCTTGC
GCACACCTGCCCATTTGACTCCAGCCGCGTGCGCAGACGCTAGCCCTAAC
CCTAGGTATGATGCATACCTACCCGTTACGCAGATCACGCGCGGCAGCCG
CAAAGAGCACAACTTTGTCCGCGTTATCATGAATCTTCCTACTGGGAACT
GGCATCGTACAACATGCAACGGCATTCACGCATCGGCATTTACACATTAA
TGGCTGAGACACCCAGCAGGCATGTGCAGTAAGCGCCGTCCCCCCCCCCC
CCAATCCCTCACTTCAACCCTCATCCTAGGTCCTGAGCGGTGACGCAAGC
CCTACAGTACCTCAAACCTAACCCTACCTCCTGAGCCGTGACACAAAAGC
GAGCCCCAACCCTAGGTCTGATGCAAACTTACCCACCTACCCTCCAACCA
ATGCACGCGCAGATCACGCGCAGCGGCCGCAAGGAGCGCATGTTTGTGCT
CTTCAGCGACGAAGCTGGTGTACAGCGAAGCGAAAGGGCTACCCTAACCC
TAACCCTAGGTCTGATTTGTACGTACCTACATACCCCCCAATCTTGCATG
CAGATCACACGCGGCGGCCGCAAAGAGCACAAGTTCGTGCTCTTCAATGA
CAAGCTCGTCTATGGCGAAGAGAAAGGCCTACTCATGCGCCGCACGGGCA
TGTTTGCCAACGTCGTCAGCGGCAACACCAAGCGCCAGTACCGCAAGGCC
TACGACTTCCCCCTGAGCAGGGGGCTGTACGTGGTCAACGACGTGGGGGG
TGCGTATGCCAGCGCGCGTAGCGGGGGAGGGGGCGGGGGGGCAGCGGAGG
GGGTTTTGGGGGACACGGGCTTCATGTTCATCACGCCGGATAAGAGTTTT
GTCGTGCACGCTGCGTCGCCTGCGGAGAAGGACGCGTGGGTGCAGGTGCG
TCATGGCGGCAATTATGCAGTTGGCAGTTATGTGGCAGTTACCACGTGGC
GTCGCCCATGCAGTTGCGTGGGTGCAGGTGCAGTTCGCATCCGGCAGTTA
CATGGCAGTTGCACAATTTGTTTTCGATACTTCTATTAGAATGCGGGGCA
AGCTTTGTCGCGCACGCGGCGTCACACGCGGAAAATTATGCGTGGGCAGT
TACATGGCAGTTACACATTACGACGCCGGACAAGAGCTTTGTCTTGCATG
CTGCGTCACCTGCTGAAAAGGATGCGCGGGTTCAGGCGCGTACCAACGGC
TGTTACGCAAACAGCAGTTACATGGCAGTTGCACAGAATTCATGATCCAC
GGCAGGAGCTGCGTGGTGCATGTGGCGTCGCCTGACCGGCGCGTGCGCGG
GCGGCGTCAGTCGCGCCGTTGGCCGTCACAGAGCAGTTGCGCAGTCTGCA
TGGTCAGGAGAGGTTTCGTGGTTCACGTGCTGTCGCTAGCGGAGAAGCTG
AGAGGCACGAATGGCAGCTACACAAACGGCAGTTACGCAGTTTGCCACAC
TGCTCAGCATCAGAAGGGTCTCTGTGCAACGCGGCTCGAAAACCCCTAGG
GTTAGGCTTAGGGTTAGGGTTAGGATTAGGGTTAGGGTTAAGGTTAACCC
TAACCCCAAGACATCCATCACTGTACTCGCAACTTCCAGTTCCATGGAGG
ATGAAGAGGCTCACAAGCACGGCGCAAGTGAACAGTGAACATGCTGCTGT
TGTTCAGCATGCAGCGCGCATTGCAGTTCTGCCTTGCTGCGCTCTTGAGG
CTAAAGTAAGGGCTAACCTAACCCTAACACTAATGGAAACGAATCAAACG
ATCGTAGAGCCGTAGGAGTTAAGGAGTGGTTAGCCGCAAGTGCCTTCCAC
CAATGATCCTAACCCTAACCCTATCCCTCTTCTCAATGTGTGCAGGCATT
ACGACGCGTGATGGCTGACCTGACGGCCAAGGGTGACTCGCGCGCGCTCA
AGGTCGACATGGATCTGTCAGACAAGGTGCGCTTATTAGCAGGTCATCAT
TGCTGGTGTGCCGTGCGCATCATCGATTCTGATTCAGGTGGCTATTAGTC
TGTTTCTGAAATAGCCATTGATATATGCACAGGGTAGAGTCAGACACGGG
CCATGAGTCGCTGAGATCAGCCACTGCGGCGCGTGCAATACAAACACTTT
TCGACAACTCACAATCTTTGATTCGAAGAAACATTGATCTATCGGACAGC
GTGGGACCGTTGCCATGCATGCAAAATCTGACCGGGCTGGCATTCAGGCT
CCGCATTGACATTGACATCGCATTCGCGTTATGCTCACGTCAGCAGCTGG
TGTGTCACACCACCCGCGCCTCTTGCTCAAGTGATGGCTGGGCATGAGAA
ATCTGGGCACAATACCCTGCAAGTGCGCTCTTCCGGCGCGTAAACTCCCA
AATAATTGACACCTGAACCCCCTCCCCCCCCTTCAACTCAGGTCAAGCCC
ACCAAAAGCGGCAAGTCCATATTGCGCGGTTTCAACCCCCCCCTCCCCCC
CCCTCCCCCCCTCCCCTTCCCTTCTCTTTTCATCTCAGGTCAAGCCCGCC
AAAAGCGGCAAATCCACATTGCGCGCCCTCACCAACTTGCAATGAATTGA
CCCCCCCCTCCCCTCCCCTTTTCTTCTCTTTTCAACTCAGGTCAAGCCCG
CCAAAAGCGGCAAATCCATAAGCTGCGACATCTTCGTCTGGGTGATTCGC
GACGGGAAGACCATGCGCCAGGGGTTCTCCCTCCCCCCGTCCGCCCTGTC
CGCCCCCTTTGGCGTCCTCTCGTACAGCGAGCTGGTCCAGAGGGGGGCGC
AAGTGGACCCCTCCCCCACCCGCGCTGGCCTTCCTGATGACGATCTAGGG
TTCGGTCTGGAGTGGGATGCGCCCCCCGCACTTCAACTTGAGGTGAGCGG
TGCCATGTCAGGGTTAGGGTTAGTTTTTTTTTAGTGTGCGCACTTGCACG
TACGTGTCGGGGTTAGAGTTAGGGTCAGGCCAAGCGCTCCGTTGCTTTGA
ACGGCAACGCATTACAGCAGTTATTGTTTGGTGTGTTGTTGTTGTGTGGC
GTCGCAGCATGGTAAACAGAGTGCGCCACACGCTGCTGGCACCTTGCGCT
GTTGCTGATTTGCATGCTCACCTGCACTCCGAGCGATGCCACAAGGTGAG
CTTGACATGCTCGTAGCATCAATTTGATGTTGACCACTGTAGCCATGCAT
TTCTTTCTTCATCAATCCTGTTTCTTGGTTTTTGTTGCCTCTGCATCAGG
TGCTACCGGACCCCTTCGACGATGACTACGATGACCCCCTCGGGGGGTCA
CGACTTCAAGTTGAAGTTTCCCTTCAACCGGGCGACCGGCTGGGACTGCG
CCTGCGGGATATACAGGGGGGCGGCGTGCTGGTGATGGGGTTCATCACCA
GGGGGTGCGCTGCGCAGGTGCGTCAGCTTTGAAGTTTACAGTTGCTTATG
TACTCGAAGTACATGCTTTGAGGCTATACGGATGCAAATGCGATGTGATG
TACTTACTCATGGTGCGCATACAGTATGTGAGGCATGTGCCATCATTGTA
TGTTGTACACGTTTTTACATCCCTCGGCAGTAGCCCATTATCAATGTGGG
GTGTGCTGCGCAGGTGCATACTCGTCAGCGGTCTGTCAGCGGCACAAGTC
TTCTTCAGCACGGTTTAGTTTTGACACTTTTCTGATCTTGCTGCATCCGT
TCAACTGGTTCCAGCCCATGGAGCCACTGCATTTTTGAAAGGGATCTGCC
TATTGAGACGAGTACCTCACACCAGGGCAGTTTGACGCGACGCTTGCAAC
AGCCCTTTGAGTCGACTAAAGGCTGTTCTCAGCTCAGTGCTGTAGCAATA
ACAATTTTTCATTGTTGTATAAAAATGCCCGTACCAGTCACTTCATGCCC
GAATGTGTGCGCTCAGCACAGCAACACATCACTCCTGCTCATTGCAACAT
CAACTTCAACTTATTTTTGCACATCGCTGGCTGTTGCCACAGCGACCTGG
TCACTTCTGCCTCATGCGCATACATACGGCTGGACCAAGCACAGCACACG
CTCACTTCACCAGTGACTTCAACTCCTTCGTGCGCAGGTTGCTGGCGTCT
GCCAAGGCGACCGAGTCACCCATATCGACGGCACTGGACCGCTATTATCA
GCAGCAGAGGCGGCGGCCGCAGCAGCAGCAGCGCTCGACCGCTGCGGCGG
TGGGGGAGTATTGAAGTTGACGCTCCGCAGGGGGTTC back to topCoding sequence (CDS) from alignment at Contig_19:96491..101227+ >mRNA_5460 ID=mRNA_5460|Name=jgi.p|Trimin1|147988|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1059bp|location=Sequence derived from alignment at Contig_19:96491..101227+ (Tribonema minus UTEX_B_3156 ) GAGTTTGGTGCGCAAGACTTCCTGGAGCCCGGCCGGCAGTTTGTGCTGGA GGGCGACCTTATTAAGATCACACGCGGCGGCCGCAAAGAGCACAAGTTCG TGCTCTTCAATGACAAGCTCGTCTATGGCGAAGAGAAAGGCCTACTCATG CGCCGCACGGGCATGTTTGCCAACGTCGTCAGCGGCAACACCAAGCGCCA GTACCGCAAGGCCTACGACTTCCCCCTGAGCAGGGGGCTGTACGTGGTCA ACGACGTGGGGGGTGCGTATGCCAGCGCGCGTAGCGGGGGAGGGGGCGGG GGGGCAGCGGAGGGGGTTTTGGGGGACACGGGCTTCATGTTCATCACGCC GGATAAGAGTTTTGTCGTGCACGCTGCGTCGCCTGCGGAGAAGGACGCGT GGGTGCAGGCATTACGACGCGTGATGGCTGACCTGACGGCCAAGGGTGAC TCGCGCGCGCTCAAGGTCGACATGGATCTGTCAGACAAGGTCAAGCCCGC CAAAAGCGGCAAATCCATAAGCTGCGACATCTTCGTCTGGGTGATTCGCG ACGGGAAGACCATGCGCCAGGGGTTCTCCCTCCCCCCGTCCGCCCTGTCC GCCCCCTTTGGCGTCCTCTCGTACAGCGAGCTGGTCCAGAGGGGGGCGCA AGTGGACCCCTCCCCCACCCGCGCTGGCCTTCCTGATGACGATCTAGGGT TCGGTCTGGAGTGGGATGCGCCCCCCGCACTTCAACTTGAGGTGCTACCG GACCCCTTCGACGATGACTACGATGACCCCCTCGGGGGGTCACGACTTCA AGTTGAAGTTTCCCTTCAACCGGGCGACCGGCTGGGACTGCGCCTGCGGG ATATACAGGGGGGCGGCGTGCTGGTGATGGGGTTCATCACCAGGGGGTGC GCTGCGCAGGTTGCTGGCGTCTGCCAAGGCGACCGAGTCACCCATATCGA CGGCACTGGACCGCTATTATCAGCAGCAGAGGCGGCGGCCGCAGCAGCAG CAGCGCTCGACCGCTGCGGCGGTGGGGGAGTATTGAAGTTGACGCTCCGC AGGGGGTTC back to top
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