mRNA_5454 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162002
Unique NamemRNA_5454
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A836CKJ8_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.450e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAIDATEGFRCIPSSILS 219
            RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAIDATEGFRCIPSSILS
Sbjct:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAIDATEGFRCIPSSILS 73
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A4S2M8_OSTLU (PseudoU_synth_2 domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2M8_OSTLU)

HSP 1 Score: 83.6 bits (205), Expect = 4.040e-18
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI--DATE--GFR 195
            RFCHQLD ATSG+++   TREAAG  A+LFRDRLAKK+Y+AVV+GWP+ D   V+A +  D T+  GFR
Sbjct:   39 RFCHQLDTATSGVVLTAHTREAAGNAAKLFRDRLAKKKYLAVVFGWPKEDEWTVNAKLGKDPTDVKGFR 107
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A0G4FEV8_VITBC (PseudoU_synth_2 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEV8_VITBC)

HSP 1 Score: 85.5 bits (210), Expect = 4.790e-18
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAID 177
            R CHQLD ATSG+LV+GKT+EA G CA LF  R A+KQY+A+VYG P WD   VDAAI+
Sbjct:  174 RPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGHPSWDETTVDAAIE 232
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A7S0Z9J9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z9J9_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 8.020e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI----DATEGFR 195
            RFCHQLD ATSG+++   TREAAG+ A+LFR+R AKK+Y+AVV+GWPE D   V+A +    D  +GF+
Sbjct:   73 RFCHQLDTATSGVVLTANTREAAGSAAKLFRERRAKKRYLAVVFGWPENDEWTVEAKLSKDPDDVKGFK 141
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A7S0KHX4_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KHX4_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 6.070e-17
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI----DATEGFR 195
            RFCHQLD ATSG+++   TREAAG+ A+LFR+R AKK+Y+AVV+GWPE D   V+A +    D  +GF+
Sbjct:  511 RFCHQLDTATSGVVLTANTREAAGSAAKLFRERRAKKRYLAVVFGWPENDEWTVEAKLSKDPDDVKGFK 579
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A1Y5ILB9_OSTTA (Pseudouridylate synthase, 23S RNA-specific n=3 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5ILB9_OSTTA)

HSP 1 Score: 78.6 bits (192), Expect = 1.890e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI----DATEGFR 195
            RFCHQLD ATSG+++   T+ AA A A+LFRDR AKK Y+AVVYGWPE D     A +    +  +GFR
Sbjct:  191 RFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGWPERDEWTTTAKLGKDPNCPKGFR 259
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A7S0KV63_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KV63_MICPS)

HSP 1 Score: 74.7 bits (182), Expect = 2.760e-14
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI----DATEGFR 195
            RFCHQLD ATSG+LV    + AAGA A+LFR+R A+K Y+A+V+G PE D   VD  +    D  +GFR
Sbjct:  119 RFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGHPEKDEWTVDVPMGRDPDDPKGFR 187
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A7S0MYQ1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MYQ1_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 3.310e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAI----DATEGF 192
            RFCHQ+DFAT G+L+  KT+ AAGA  +LF  R  KKQY+A+V+G P  D   +DA I    D  +GF
Sbjct:  212 RFCHQIDFATEGVLLAAKTQAAAGAVGKLFSSRSNKKQYLAIVFGHPASDEWTIDAPITKDEDCPKGF 279
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: A0A7S1ALB9_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALB9_NOCSC)

HSP 1 Score: 68.2 bits (165), Expect = 3.980e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWDNVEVDAAIDATEGF 192
            RFC+QLD ATSGILV+  T++AAG  AR F  R  +K Y+A+V G P W+ V +   +   EGF
Sbjct:  126 RFCNQLDHATSGILVMASTKQAAGRVARSFETRNVRKTYLAIVLGHPTWEEVRLTNQLADGEGF 189
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BLAST of jgi.p|Trimin1|162002 vs. uniprot
Match: K8EIZ1_9CHLO (Pseudouridine synthase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIZ1_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 4.160e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPE 144
            RFCHQLD ATSG+L+   T++AAG  A++FR+R  KK Y AVV+GWPE
Sbjct:  154 RFCHQLDNATSGVLLCALTKKAAGVAAKMFRERRTKKFYSAVVFGWPE 201
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162002 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKJ8_9STRA1.450e-47100.00PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A4S2M8_OSTLU4.040e-1860.87PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A0G4FEV8_VITBC4.790e-1866.10PseudoU_synth_2 domain-containing protein n=3 Tax=... [more]
A0A7S0Z9J9_9CHLO8.020e-1856.52Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S0KHX4_9CHLO6.070e-1756.52Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A1Y5ILB9_OSTTA1.890e-1555.07Pseudouridylate synthase, 23S RNA-specific n=3 Tax... [more]
A0A7S0KV63_MICPS2.760e-1453.62Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7S0MYQ1_9CHLO3.310e-1351.47Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S1ALB9_NOCSC3.980e-1250.00Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
K8EIZ1_9CHLO4.160e-1262.50Pseudouridine synthase n=1 Tax=Bathycoccus prasino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:68006..68227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162002|e_gw1.19.119.1
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Preferred nameRPUSD1
Descriptionpseudouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Evalue6.62e-19
Seed ortholog242159.ABO98070
Hectar predicted targeting categoryother localisation
TranscriptId162324
TrackFilteredModels1
ProteinId162002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162002gene_5454Tribonema minus UTEX_B_3156 geneContig_19 68006..68227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5454_1exon_5454_1Tribonema minus UTEX_B_3156 exonContig_19 68006..68227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5454CDS_5454Tribonema minus UTEX_B_3156 CDSContig_19 68006..68227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162002Trimin1|162002|e_gw1.19.119.1Tribonema minus UTEX_B_3156 polypeptideContig_19 68006..68227 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5454 ID=mRNA_5454|Name=jgi.p|Trimin1|162002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_19:68006..68227- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGTTCTGCCACCAGTTAGATTTCGCCACCAGCGGCATATTGGTCGTTGG
CAAAACGCGCGAGGCGGCGGGCGCCTGCGCACGCCTGTTCCGTGACCGCC
TGGCGAAAAAGCAGTACATGGCGGTGGTGTATGGGTGGCCGGAGTGGGAC
AATGTTGAAGTTGACGCGGCGATCGACGCAACGGAAGGCTTCAGGTGCAT
ACCATCTTCAATATTGAGTTGA
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protein sequence of jgi.p|Trimin1|162002

>Trimin1|162002|e_gw1.19.119.1 ID=Trimin1|162002|e_gw1.19.119.1|Name=jgi.p|Trimin1|162002|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
RFCHQLDFATSGILVVGKTREAAGACARLFRDRLAKKQYMAVVYGWPEWD
NVEVDAAIDATEGFRCIPSSILS*
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mRNA from alignment at Contig_19:68006..68227-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5454 ID=mRNA_5454|Name=jgi.p|Trimin1|162002|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_19:68006..68227- (Tribonema minus UTEX_B_3156 )
AGGTTCTGCCACCAGTTAGATTTCGCCACCAGCGGCATATTGGTCGTTGG
CAAAACGCGCGAGGCGGCGGGCGCCTGCGCACGCCTGTTCCGTGACCGCC
TGGCGAAAAAGCAGTACATGGCGGTGGTGTATGGGTGGCCGGAGTGGGAC
AATGTTGAAGTTGACGCGGCGATCGACGCAACGGAAGGCTTCAGGTGCAT
ACCATCTTCAATATTGAGTTGA
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Coding sequence (CDS) from alignment at Contig_19:68006..68227-

>mRNA_5454 ID=mRNA_5454|Name=jgi.p|Trimin1|162002|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_19:68006..68227- (Tribonema minus UTEX_B_3156 )
AGGTTCTGCCACCAGTTAGATTTCGCCACCAGCGGCATATTGGTCGTTGG
CAAAACGCGCGAGGCGGCGGGCGCCTGCGCACGCCTGTTCCGTGACCGCC
TGGCGAAAAAGCAGTACATGGCGGTGGTGTATGGGTGGCCGGAGTGGGAC
AATGTTGAAGTTGACGCGGCGATCGACGCAACGGAAGGCTTCAGGTGCAT
ACCATCTTCAATATTGAGTTGA
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