mRNA_5448 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348041
Unique NamemRNA_5448
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A835Z8D1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.270e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 MAPAPAAVTAEGTQLKLLLRVALAGLVFAVATTMIGWNLKSVQEVDPEDKKRRLLRKFEEGRFRRVETTRRILTKQQTEAQPALVRAQ 264
            MAPAPAAVTAEGTQLKLLLRVALAGLVFAVATTMIGWNLKSVQEVDPEDKKRRLLRKFEEGRFRRVETTRRILTKQQTEAQPALVRAQ
Sbjct:    1 MAPAPAAVTAEGTQLKLLLRVALAGLVFAVATTMIGWNLKSVQEVDPEDKKRRLLRKFEEGRFRRVETTRRILTKQQTEAQPALVRAQ 88          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A836CKS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS5_9STRA)

HSP 1 Score: 525 bits (1352), Expect = 1.530e-188
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 MDKGSVRFWLVVKQGFMVRLCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLGAHSMEVAEQEGQLTHHRSTAKARITNREDAPQACLVAEHLGMQREVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKDPANNSTTHRTSGS 774
            MDKGSVRFWLVVKQGFMVRLCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLGAHSMEVAEQEGQLTHHRSTAKARITNREDAPQACLVAEHLGMQREVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKDPANNSTTHRTSGS
Sbjct:    1 MDKGSVRFWLVVKQGFMVRLCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLGAHSMEVAEQEGQLTHHRSTAKARITNREDAPQACLVAEHLGMQREVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKDPANNSTTHRTSGS 258          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A1V9YAP2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAP2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.890e-20
Identity = 69/252 (27.38%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   58 LCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLGAHSMEVAEQEG--QLTHHRSTAKARITNREDAPQACLVAEHLGMQREVSDAVKSLT------------------------EWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            + IA  DP     P+ + +M+ V  + +  +  PD ++YKDEG ++KC+   V + D        H   L ++ VVP   +L+Y++G   ++Q+IL ++ +S R    A  A V+ RIE+  +         +   +G   +   R+T     + R   P     AE +    +  DA  S +                         W +  L AL  L+W+ VG+E+G+DG  D   P+YRCPSC ++KD
Sbjct:   95 VAIAPEDPTSTVAPVVSSEMVAVRHHLVVQNALPD-VWYKDEGSRDKCLEFAVHLVD--------HSGALVQSRVVPLRISLVYDNGVTVFKQDILKVAPESQRCTDPAGRALVKVRIEDVSRNHQSQPFRLLVAPDGLADVAPDRTTPVTVRSKRNKRPAEPRPAELVSAD-DSGDAASSASASPPRWAREKRPRLAADSTIGRVLSWTRSVLQALELLEWQQVGFEIGRDGAADFGRPLYRCPSCWRYKD 336          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A1V9YPE3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPE3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.350e-15
Identity = 68/272 (25.00%), Postives = 115/272 (42.28%), Query Frame = 1
Query:   58 LCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-AHSMEVAEQEGQLTHHRSTAKARIT--------NREDAPQAC-----LVAEHL--------------------------------GMQREVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            L I+ A       P+ +  M TV R++L +  +   ++YKDEGG++KCM + V + D        H  +   +  VP   TL+YE+ +   +Q+IL +S DS R +     A ++ RIE+  +   G A  ++V     Q   +   A    T        N+   PQ       L A H+                                    +++ +++S+  W    +  L  L+W+ +G+E   DG  D   P+YRCP+C ++KD
Sbjct:  103 LSISPAGGGHEMNPVLSNDM-TVIRHRLVIQEELPELWYKDEGGRDKCMLLPVHLVD--------HNNNTVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAFRLKVEADTAQSPINFDVAFDLSTTISVRSKRNKRRGPQTSSALGGLKAPHIITGEGHSSPTNLDLVSPSDVDHRKRARQELDVPSSTKMNPSMESVLSWTGSVVQGLQHLEWQPIGFETKPDGSMDRDRPIYRCPACWRYKD 365          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A6G0WPZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPZ0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.140e-15
Identity = 65/250 (26.00%), Postives = 107/250 (42.80%), Query Frame = 1
Query:   97 PITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-AHSMEVAEQEGQLTHHRSTA---------KARITNREDAP--------QACLVAEHLGMQREVSD-------------------AVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            PI +  M T   ++L +  +   ++YKDEGG++KCM + V + D     +P           VP   TL+YE  +   +Q+IL LS DS R + +   A ++ RIE+  +   G A  ++V     Q       A         +++   R   P         +    + L   RE  D                   +++S+  W    +  L +L+W+ +GYE   DG  D   P+YRCP+C ++KD
Sbjct:  119 PIMSTDM-TCITHRLMIQEELPELWYKDEGGRDKCMNLPVHLVDATNQPVPR---------AVPLRVTLLYESEHPVLKQDILKLSPDSQRLIDSHGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRNKRRGGPIPSPHVIASSSSGIDPLDSPREGEDPRPVKRTISPSTASGPLHPSMESILRWTSSVVQGLQQLEWQPIGYETRLDGGIDKDRPIYRCPACWRYKD 358          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A485LTJ6_9STRA (Aste57867_25083 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTJ6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.310e-15
Identity = 67/254 (26.38%), Postives = 107/254 (42.13%), Query Frame = 1
Query:  118 ITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALV----VPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-AHSMEVAEQEGQLTHHRSTA---------KARITNREDAPQACLVAEHLGMQ----------REVSD------------------------AVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            +T  R++L +      ++YKDEGG++KCM             LP+H  D S   V    VP   TL+YE+ +A  +Q+IL LS DS R + +   A ++ RIE+  +   G A  ++V     Q       A         +++   R         +  LG            RE  D                        +++ + +W    +  L +L+W+L+GYE   DG  D   P+YRCP+C ++KD
Sbjct:  125 MTCIRHRLIIQEDLPDLWYKDEGGRDKCMN------------LPVHLVDASNQTVGHRPVPLRVTLLYENEHAVLKQDILKLSPDSQRVIDSNGQALLKLRIEDVSKNHQGQAFRLKVEPDTAQSPLFFDVAPDWSTPISVRSKRNKRXXXXXXXXSSHGLGASGIDPLGPDSPRENDDHGRPAKRQIMTANGGGVGSQPLHPSMEGVLQWTGSVINGLQQLEWQLIGYETKLDGSLDRDRPLYRCPACWRYKD 366          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: T0QE37_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QE37_SAPDV)

HSP 1 Score: 84.0 bits (206), Expect = 9.910e-15
Identity = 66/272 (24.26%), Postives = 118/272 (43.38%), Query Frame = 1
Query:   58 LCIAAADPDGICGPITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-AHSMEVAEQEGQLTHHRSTA---------KARITNREDAPQACLVA--------------------------------EHLGMQR----EVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            L I+ A       PI + +M TV R++L +  +   ++YKDEGG++KCM + V + D        H  +   +  VP   TL+YE+ +   +Q+IL +S DS R +     A ++ RIE+  +   G A  ++V     Q   +   A         +++   R   P +  +                                 +HL +      +++ +++S+  W    +  L  L+W+ +G+E   DG  D   P+YRCP+C ++KD
Sbjct:  104 LSISPASSGLDVTPILSNEM-TVIRHRLVIQEELPELWYKDEGGRDKCMLLPVHLVD--------HNNNPVGSRPVPLRVTLLYENEHPVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAFRLKVEADTAQSPINFDVAFDLSTTISVRSKRNKRRGPPTSSALGGLKAPHIITGESHGSPTHLDLVSPSDAKRSRQDHLDVPTSSAAKMNPSMESVLSWTGSVVQGLQHLEWQPIGFETKPDGSMDRDRPIYRCPACWRYKD 366          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A1W0A8H7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8H7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-13
Identity = 67/257 (26.07%), Postives = 109/257 (42.41%), Query Frame = 1
Query:  118 ITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALV----VPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-AHSMEVAEQEGQLTHHRSTAKARIT--------NREDAPQAC-----LVAEHL-----------------------GMQRE----------VSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQFKD 735
            +TV R++L +  +   ++YKDEGG++KCM             LP+H  D S   V    VP   TL+Y++ +A  +Q+IL +S DS R +     A ++ RIE+  +   G A  ++V     Q   +   A    T        N+   P        L   HL                         QR+          ++ +++S+  W    +  L  L+W+ +G+E   DG  D   P+YRCP+C ++KD
Sbjct:  121 MTVIRHRLVIQEELPDLWYKDEGGRDKCML------------LPVHLVDQSNNPVGTRPVPLRVTLLYDNEHAVLKQDILKMSPDSQRVIDQHGKAVLKLRIEDVSKNHQGQAFRLKVEADTAQSPINFDVAYDLSTPISVRSKRNKRRGPSTTSASLSLKTSHLLPGEPHGSSPTNLDLISPSEEQRKRQRQDLEIPTSSAKMNPSMESVLSWTGSVVQGLQHLEWQPIGFETKPDGSMDRDRPIYRCPACWRYKD 365          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A1Z5K3I1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3I1_FISSO)

HSP 1 Score: 73.9 bits (180), Expect = 2.390e-11
Identity = 69/256 (26.95%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   37 KQGFMVRLCIAAADPDGICGPITAFKMITVYRYKLNVHTQ---PDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDG-----NAPYQQEILTLSQDSD-RQVTTAKSATVRFRIEEAQQQQLGAHSMEVAEQEGQL--------------THHRSTAKARITN-REDAPQACLVAEHLGMQRE-VSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPSCKQF 729
            +  F++RL  A  D  G     T   +I V R KLN+ T    PD ++YKDEGG++KCM + V + D  + RL  H+        VP    L YE        A   Q+IL L   S   ++ T+    +RFR+E+  +   G + +   + + ++              +      ++  TN  ED P     A       E + +AV  +T W +E +  ++ LQW+++GY    DG  D   P +   +   F
Sbjct:  116 RNAFVIRLD-AKGDVQG-----TQSAVIYVVRAKLNITTPSDWPDPVWYKDEGGRDKCMEVTVTITDKDSQRL--HES-------VPLRIELFYEAKPSGRPTAVLNQDILRLLGSSRILELDTSGQTKLRFRVEDVSKNHQGQNFVLKIQPKAEIVDIAPAWTPAVAIRSKRNKRQRSHTTNPTEDFPSPLATAPQPPHHNERLREAVNGITRWSEEVVNGIYPLQWQVMGYAQNADGSYDYNRPYHNMQNPNAF 356          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A7S1VP05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VP05_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.450e-11
Identity = 69/248 (27.82%), Postives = 108/248 (43.55%), Query Frame = 1
Query:  106 AFKMITVYRYKLNVHTQPD--AMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALVVPFTTTLIYEDGNAPYQ---QEIL-TLSQDSDRQVTTAKSATVRFRIEEAQQQQLG-------------------------AHSMEVAEQEGQLTHHRSTAKARITNREDAPQACLVA--EHLGMQR-----------EVSDAVKSLTEWIKEALAALHELQWELVGYEVGKDGKPDTKWPMYRCPS 717
            A + I+V R+K+ V  + D   ++YKDEGG++KCM++ V M D   ++L M +Q       VP   TL Y +G+ P +   Q+IL TL         T+  AT+RFRIE+  +   G                         A S+     +   T   + AK     +  + QA L +  E     R            + DA+K + +W  E +  L+ LQW+++GY    DG  D   P +  P+
Sbjct:  179 ATRAISVVRHKIRVTPESDWEKIWYKDEGGRDKCMSVSVSMYDK-NEQLYMGEQ-------VPLQMTLYYANGDEPIKVIKQDILKTLGAAKMYIEKTSGKATLRFRIEDVSKNHQGQDFKVEIAPDARVKGFGDVAPGFTPAVSIRSKRNKRHRTFSSTEAKQEARYQPGSRQAGLYSLPEEAARGRGEAAISTADLPRLRDAIKGVMQWTDEVVNGLYPLQWQVIGYAQNPDGSHDYNRPYHSMPN 418          
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Match: A0A7S4D5X0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5X0_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 6.210e-10
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   97 PITAFKMITVYRYKLNVHTQPDAMFYKDEGGKNKCMTIEVGMEDVLADRLPMHQQDLSKALV----VPFTTTLIYEDGNAPYQQEILTLSQDSDRQVTTAKSATVRFRIEEAQQQQLG 438
            P  + +++T+    L V   P   +YKDEGGK  C+T+ V ++    + LP      ++A      VP    L+YEDG A  QQ IL L++DS   V     AT+RFR+ E  Q+  G
Sbjct:  129 PPASSELMTICSALLEVVADPPTKWYKDEGGKGNCITLNVRLKGPAGEGLPEEGGPAARARPAAQEVPLFVALLYEDGKAVGQQGILQLARDSRLAVGPGAPATLRFRVGEVSQRHQG 246          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348041 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8D1_9STRA4.270e-48100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348041 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKS5_9STRA1.530e-188100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9YAP2_9STRA2.890e-2027.38Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9YPE3_9STRA5.350e-1525.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WPZ0_9STRA7.140e-1526.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LTJ6_9STRA7.310e-1526.38Aste57867_25083 protein n=1 Tax=Aphanomyces stella... [more]
T0QE37_SAPDV9.910e-1524.26Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1W0A8H7_9STRA2.000e-1326.07Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1Z5K3I1_FISSO2.390e-1126.95Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1VP05_9STRA3.450e-1127.82Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4D5X0_HETAK6.210e-1035.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:12069..14473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348041|estExt_Genemark1.C_Ctg_190003
Hectar predicted targeting categorysignal peptide
TranscriptId348363
TrackFilteredModels1
ProteinId348041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348041gene_5448Tribonema minus UTEX_B_3156 geneContig_19 12069..14473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5448_1exon_5448_1Tribonema minus UTEX_B_3156 exonContig_19 12069..12141 +
exon_5448_2exon_5448_2Tribonema minus UTEX_B_3156 exonContig_19 13935..14473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5448CDS_5448Tribonema minus UTEX_B_3156 CDSContig_19 12069..12141 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5448UTR3_5448Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 14129..14473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348041Trimin1|348041|estExt_Genemark1.C_Ctg_190003Tribonema minus UTEX_B_3156 polypeptideContig_19 12069..14128 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5448 ID=mRNA_5448|Name=jgi.p|Trimin1|348041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=612bp|location=Sequence derived from alignment at Contig_19:12069..14473+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCGCCCGCTGCGGTGACCGCCGAGGGCACTCAGCTGAAGCT
GTTGCTAAGAGTGGCACTGGCAGGCCTCGTCTTCGCCGTGGCCACCACCA
TGATCGGCTGGAACCTGAAGAGCGTGCAGGAGGTTGACCCTGAGGACAAG
AAGCGGCGGCTGCTGCGCAAGTTCGAGGAAGGCCGCTTCCGCCGCGTGGA
GACGACGAGGCGGATCCTCACCAAGCAGCAAACGGAGGCGCAGCCAGCGC
TGGTCCGTGCGCAGTAAGAGCTGTTTTTGAATCCCGTCGTGAATGTCACG
GCGTGCCAGGAGGCATTTTTGCTAGCCCAGACTGTTTTTAAAAGTGCGTC
GCGACAGCGGAGTTGTTGCTAGCAGTCGTCGACCGGTTGTCCAGTCATCG
GGAAATTTTGTGTGTGTATGGTGTCGTGTGTCAGTTCTGTCTTATGTATC
CTCCCCAGCCTTCTACGGAACCTCGAGCCTCAAGGCTGGCGCATCGCGCC
GAGGATGCCCATGTATTTGTACACATTTGGGCGGCGTCACGACGGTCGTT
GCTCTCTTTGGCATGCAGTGCGGCACAGCCGCATTTCACCAAATACACGG
ATTTTGACCTCA
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protein sequence of jgi.p|Trimin1|348041

>Trimin1|348041|estExt_Genemark1.C_Ctg_190003 ID=Trimin1|348041|estExt_Genemark1.C_Ctg_190003|Name=jgi.p|Trimin1|348041|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=89bp
MAPAPAAVTAEGTQLKLLLRVALAGLVFAVATTMIGWNLKSVQEVDPEDK
KRRLLRKFEEGRFRRVETTRRILTKQQTEAQPALVRAQ*
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mRNA from alignment at Contig_19:12069..14473+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5448 ID=mRNA_5448|Name=jgi.p|Trimin1|348041|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2405bp|location=Sequence derived from alignment at Contig_19:12069..14473+ (Tribonema minus UTEX_B_3156 )
ATGGCTCCCGCGCCCGCTGCGGTGACCGCCGAGGGCACTCAGCTGAAGCT GTTGCTAAGAGTGGCACTGGCAGGTGCTGGATGTGAGGTTTGGGTGGGCG ACTTGGAGCAGCAGCGACAAGAGGATGAGTGGGAGAAGCTGCTTGTGTAG TCCGCAGGTTGATCGTTCAACGTAAGTGCGGTCGCGGCGCCATGTGCGAA ACAGCGCAGTGGGTCATGCTCGGCAATAGAGAGCTCTAGGTGAAGTCGCT GTCGGCGTCGGCGCCGGAGCCGCCGCCCTTGTACGTCCGACGACCGTGAG TCACGAGCGGGCGCTGCGGCGGCCTCTGACAGACATGACCACGTCCGCTA CGTCAATGACGGTGGCTGCAGCTGCCATGGCACCGCTGCCACTGTTGCTG CCGCTGAGCTGGTGGGAGCTGGTGCAAGTCTAACTGCTGTGCATGGGCGC GTTTGCGCCACTGTTGAGGTTGGGGTTTTTGTCAACTTGCCAACTTGAAC TTGCTTTGAAGAATGAGACGTTGAGCCTGGTGTCTGCCGCGTGGAGGTAC ACATCCTGGCCATAATGCAGCCTCAGCGTTCTAAATTTGTCACACCGCTG CAATCTGCCTGGCCAGCAAGTAATTTTGTGGCAGCATTTGAATGAAGTTG AAAATTACCAATTTGTGGTATCATCGAAACTGTGGTGGCGACAGCTGGGC TAACACAATGACCAACTTGACAGTGTTGTACTGGTACCGAAATGCATTTT GTCATCAACACCTGGGCGCACAAGTACACGCATGATAGTGGGGACCGATC GGGGTTTGGGTGGGGTTTGTTGGGGTTGTGTTGGACTCTTCGTAGCAACA GCATTGATACCCTTAGCACCAGTGCCTGGTGCCCAGTGATCATTTTGCCT AGAGGCGTGATTCAGACGTGTCAGCATGGTCCTCAGTTCTGGGCGCTGTC AAAGGCGACCCAGGCCTGCATAAATCTTTTTCAAGACGGGACAAGTGTGG ACAAGTGTGCCTCACGGCTGGGCAACCCTAACTAGGGTTTGGTTTGGTTG TGGGGTGTTGGTGGTAGTGTGAAGAGGGGGAAGCCGGTTTGCGGTTGAGT CCCTCTTCGGAGAAGGAATGTTGCATTGAGTGCGCATCCAAAGAGAGGGC TTTTCGCGCCCCTTGCGAAGCGAAATTAATAAAAGAACACGCGACCCCAT CGACTGCGTTTGCAATTGCAATTGCCAGCCAGCCGTTCTGTGTTGAGGCC TTGCTCATACCATCAGTCACACATGCAGTGCCGGGATTCCACTGAAACCT CATCAGATGTATACAAGTCTTTCAGTCCCGAAAGCTGCAAATCTGCAGCA TGCTCTCCATTCACTTTAGGAGGCCACATGGACATGTGTTTGTCGGCAGA GCTACCTTGCAGCCTTGCCTTGGAAGCAGTAGGCAGGACACTCACCCCCC CCCCCCCCCCAGGGCACTGCAGTTCGTTACATGCAAGACGTGGTGATGGC CTGCCCGATACAGTACTGGCGGCACTGTGCGAGTACGCACACAGTCAGGA TCGTATCTACCCTTTGGTCCCGATGGCGTCACGTGCCATGTCACCCTCAG AATGAACCTCCGGGTTGAAACTTCACCTTCCGATATTCAGTTCTGTCCGA ACTCCGTAGGAATGCTTCCGCTGCCTACGACGTGTGTGGCTAGATCACTC TCTCTCTCTCTCTGTAGCACGCCAGGGACAAGTGTAGCTCGCTCACACCA CCACCCGAGCACTCCAACCTCGTCCGCTCAAAGCTGAAAGCTGGTCAGCC AAATCCGCGGATATCTACGTCAACGTGCACGCACACAAGCGACGACGATG CCGCTAGCCAGCGCAGGCCTCGTCTTCGCCGTGGCCACCACCATGATCGG CTGGAACCTGAAGAGCGTGCAGGAGGTTGACCCTGAGGACAAGAAGCGGC GGCTGCTGCGCAAGTTCGAGGAAGGCCGCTTCCGCCGCGTGGAGACGACG AGGCGGATCCTCACCAAGCAGCAAACGGAGGCGCAGCCAGCGCTGGTCCG TGCGCAGTAAGAGCTGTTTTTGAATCCCGTCGTGAATGTCACGGCGTGCC AGGAGGCATTTTTGCTAGCCCAGACTGTTTTTAAAAGTGCGTCGCGACAG CGGAGTTGTTGCTAGCAGTCGTCGACCGGTTGTCCAGTCATCGGGAAATT TTGTGTGTGTATGGTGTCGTGTGTCAGTTCTGTCTTATGTATCCTCCCCA GCCTTCTACGGAACCTCGAGCCTCAAGGCTGGCGCATCGCGCCGAGGATG CCCATGTATTTGTACACATTTGGGCGGCGTCACGACGGTCGTTGCTCTCT TTGGCATGCAGTGCGGCACAGCCGCATTTCACCAAATACACGGATTTTGA CCTCA
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Coding sequence (CDS) from alignment at Contig_19:12069..14473+

>mRNA_5448 ID=mRNA_5448|Name=jgi.p|Trimin1|348041|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=267bp|location=Sequence derived from alignment at Contig_19:12069..14473+ (Tribonema minus UTEX_B_3156 )
ATGGCTCCCGCGCCCGCTGCGGTGACCGCCGAGGGCACTCAGCTGAAGCT
GTTGCTAAGAGTGGCACTGGCAGGCCTCGTCTTCGCCGTGGCCACCACCA
TGATCGGCTGGAACCTGAAGAGCGTGCAGGAGGTTGACCCTGAGGACAAG
AAGCGGCGGCTGCTGCGCAAGTTCGAGGAAGGCCGCTTCCGCCGCGTGGA
GACGACGAGGCGGATCCTCACCAAGCAGCAAACGGAGGCGCAGCCAGCGC
TGGTCCGTGCGCAGTAA
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