mRNA_5445 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A835YXS6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXS6_9STRA) HSP 1 Score: 423 bits (1087), Expect = 7.350e-150 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQALQWYMRAAQPATPVSSAARGIPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERPPHLILVSDASRWGI 621 VVLELRAVFGWRLSPGYFDVFAQALQWYMRAAQPATPVSSAARGIPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERPPHLILVSDASRWGI Sbjct: 1 VVLELRAVFGWRLSPGYFDVFAQALQWYMRAAQPATPVSSAARGIPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERPPHLILVSDASRWGI 207
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 8.320e-15 Identity = 54/153 (35.29%), Postives = 76/153 (49.67%), Query Frame = 1 Query: 169 KMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQ-----VRLSAGFHDDLDWWRWLVQHVTLMT-TPLSSPVCAHVERPPHLILVSDAS 609 K +W TQ LG +D+ +SL K L L D+PR + AT + + S+ G L +L V R G+YFVWRL + G HT+ V L FHDDLD++RW ++H L L++P V+R P + +SDAS Sbjct: 1227 KSSNWDTQLEYLGFVIDSHKLKISLTTKKAEALKTALEIDWPRHKREATAQEVFSIAGKLWNLTYVVRAGKYFVWRLLR---------LTGLHRKHTRNCSHVVELGREFHDDLDFFRWAIEHELLTAGESLNAPCYGVVKRQPKRLYLSDAS 1370
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A225VAR6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VAR6_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 4.360e-10 Identity = 66/241 (27.39%), Postives = 106/241 (43.98%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQALQW----YMRAAQPA---------TPVSSAAR---------------GIPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLP---LDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERP---PHLILVSDASRWGI 621 +++EL A FGW SPG +++ A+ + + + PA V+ AA+ + + I+ K DWA+ +LG+ DTVA T+S+ ++K R + A+ F +R + RSL+GSLR +AT R R F+ RLQ + N T + ++ +DL WW WLV H +P + V P +I+ DAS +G+ Sbjct: 527 LIIELAAPFGWTGSPGSYEIVGGAISYVHGRHTNSINPAGIFNYHWVDDHVNVAAKIGLNCADMERSLRFAMVSVLGAAAINEDKFSDWASSQNVLGLRFDTVARTVSMAQSKINKARSIVASTFHSSSLSR-----KAYRSLLGSLRHVATCVRSARPFLQRLQHQESLLNR---------FTTINVTNDMKEDLRWW-WLVLH-----SPHLNGVSLEYFNTLPQPDVIVEVDASDYGL 747
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A3R7JLM5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JLM5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.060e-9 Identity = 67/241 (27.80%), Postives = 103/241 (42.74%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQALQWYMRAAQPAT-------------PVSSAA---------------RGIPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLP---LDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERP---PHLILVSDASRWGI 621 +V+EL A FGW SPG++++F+ A+ + A AT +S AA + + I+ K DW T+ +LG+ D+VA + +P +DK R + AT + TR + RSL+GSLR +AT R R F+ RL+ + V ++ DL WW WLV H TP + V P +++ DAS +G+ Sbjct: 113 LVIELAAPFGWTGSPGFYEIFSGAIAFMHDAHTNATCPTGFFNYHWIDDHISVAADIGASCCENDRSLRFAMVAVLGADAINTEKFSDWNTRQRVLGLEFDSVAEQILMPQAKIDKARGVVATAYFSTALTR-----KAYRSLLGSLRHVATCTRAARPFLQRLRQRERHLHR---------FRSVPVTEAMKQDLLWW-WLVLH-----TPHLNGVSLEYFNSLPSPDVVIEMDASDFGL 333
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A225VYG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYG7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.090e-9 Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 1 Query: 157 ISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERPPHLILVSDASRWGI 621 ++ K W+TQ +LG+ DT T+++P K K + +D R+ ++ + RSL+GSLR +AT RP R F+ RL++ +++ L+A DDL WWR ++Q L PL V P + +++DAS G+ Sbjct: 389 VNEEKFTPWSTQQKVLGLVFDTSTHTVAMPASKIAKAQR-IVEDAIRSHSLTRI-AYRSLLGSLRHVATCIRPARAFLQRLRAGEPQLRR---------RSRIYLTAAMRDDLVWWRIILQEQHLNGVPL---VFFEALPQPDITVITDASDVGL 529
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: G4ZPL9_PHYSP (Tyr recombinase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPL9_PHYSP) HSP 1 Score: 65.9 bits (159), Expect = 5.290e-9 Identity = 64/239 (26.78%), Postives = 98/239 (41.00%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQALQW----------------YMRAAQPATPVSSAARGIPTVR------------DCPISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPL----SSPVCAHVERPPHLILVSDASRWGI 621 ++L+L A FGW S G + V A+ + Y VS TV ++ K DW+T+ +LG+ DT A T+++P K K A T + RSL+GSLR +AT P + F+ RL+ A+ CA +V++++ DDL WWR+++ L PL S P P + +++DAS GI Sbjct: 516 IILDLAAAFGWTGSAGTYSVLGGAVAYIHGSTSTDDLPTGFYNYHWVDDHVNVVSDIESRCATVERSLRFAMTAVMGPAAVNDKKFTDWSTRQKVLGLVFDTKASTVAMPTTKIAK--AQRMIGHACQAATLTRQEFRSLLGSLRHVATCVHPAQAFLQRLRL-----GERALHRCA----RVKITSPMRDDLTWWRYILNSPALNGVPLEYFNSLP-------EPDITVITDASDAGI 736
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A6G0R5D3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R5D3_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.480e-8 Identity = 61/238 (25.63%), Postives = 102/238 (42.86%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQALQWYMR-----------------------AAQPATPVSSAARGIPTVRDCPISLSKMGD-----WATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRG-IRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERPPH--LILVSDASRWGI 621 +++++ A FGW S G + V A+ + A+ T A R + + S + D W+TQ +LG+ DT A T+++P K K +++ F + A R RSL+GSLR +AT RP + F+ RL+ + + CA +V ++ DDL WW L+ +L PL + + PP + +++DAS G+ Sbjct: 297 IIIDMSAAFGWTGSAGTYSVLGGAVAFIHGSTGSGTRRRGFYNYHCVDDHINVASSTGTQCEDAERSLRFAMTTVMGPSAVNDRKFTAWSTQQKVLGLIFDTTAGTVAMPAKKVVKARSSIAHAF---HSQALSRSEFRSLLGSLRHVATCVRPAQAFIQRLRM-----SERILHRCA----RVPVTNDMRDDLSWWWHLLHSPSLNGVPLE-----YFKSPPDPDVTVITDASDIGV 517
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: UPI001EC97F29 (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001EC97F29) HSP 1 Score: 62.8 bits (151), Expect = 5.980e-8 Identity = 61/238 (25.63%), Postives = 97/238 (40.76%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQAL-------------------QWYMRAAQPATPVSSAARG---------IPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLPLDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVER---PPHLILVSDASRWGI 621 +VLEL A FGW SPG++++ A+ W A + +A + + I+ K +W T+ +LG+ D++A +S+P K +K A T + + RSL+GSLR +AT R R F+ RL+ + + V ++ DL WW WLV H TP + V PP +++ DAS +G+ Sbjct: 797 IVLELAAPFGWTGSPGFYEIAGGAIAHTHGSHTNGVSPTGLFNYHWVDDHINVAADIGTACDDMDRSLRFAIVSVLGADAINTKKFTNWDTRQRVLGLEFDSIAELVSMPAAKVKK--ARCIVAAAHTAPTLSRKAYRSLMGSLRHVATCIRAARPFLQRLRQRESRLHR---------FQSVTVTDDMRQDLLWW-WLVLH-----TPHLNGVSLEYFNTLPPPDIVVEMDASNYGM 1017
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: V9EWC7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EWC7_PHYPR) HSP 1 Score: 62.4 bits (150), Expect = 6.790e-8 Identity = 58/239 (24.27%), Postives = 93/239 (38.91%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQAL-------------------QWYMRAAQPATPVSSAARGIP---------TVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLP---LDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVERP-PHLILVSDASRWGI 621 ++++L A FGW S G + V A+ W + S + + ++ K W T+ +LG+ DT T+++P + K R + A +R+ RSL+GSLR +AT RP R F+ RL+ + + VR+S DDL WWR+++ + L PL C P P + +D+S GI Sbjct: 217 IIIDLSAAFGWAGSAGTYSVLGGAVAFIHGSSTDAAHPDGYYNYHWVDDHVNVTADIGSCCADVERSLRFAMAAVMGPSAVNEDKFSPWCTRQKVLGLIFDTSPATVAMPASKITKARNMIANALQSDKLSRSK-----FRSLLGSLRHVATCIRPARSFLQRLREGEQRLHR---------YANVRISPPMRDDLLWWRYILHNPLLNGVPL----CYFYALPEPDFTVFTDSSDEGI 437
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Match: A0A3R7GS19_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GS19_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 7.330e-8 Identity = 61/241 (25.31%), Postives = 99/241 (41.08%), Query Frame = 1 Query: 1 VVLELRAVFGWRLSPGYFDVFAQAL-------------------QWYMRAAQPATPVSSAARG---------IPTVRDCPISLSKMGDWATQATILGVHVDTVAFTLSLP---LDKQRKLTATLFDDFPRTRTVATVRGIRSLIGSLRSLATVARPGRYFVWRLQSACNSANAAAVGGCAPPHTQVRLSAGFHDDLDWWRWLVQHVTLMTTPLSSPVCAHVER---PPHLILVSDASRWGI 621 +VLEL A FGW SPG++++ A+ W A + +A + + I+ K +W T+ +LG+ D++A +S+P ++K R++ A T + + RSL+GSLR +AT R R F+ RL + + V ++ DL WW WLV H TP + V PP +++ DAS +G+ Sbjct: 284 IVLELAAPFGWTGSPGFYEIAGGAIAHTHGSHTNGVSPTGFFNYHWVDDHINVAADIGTACDDMDRSLRFAIVSVLGADAINTKKFTNWDTRQRVLGLEFDSIAELVSMPAAKVEKARRIVAAA-----HTAPTLSRKAYRSLMGSLRHVATCIRAARPFLQRLHQRESRLHR---------FQSVTVTDDMRQDLLWW-WLVLH-----TPHLNGVSLEYFNTLPPPDIVVEMDASNYGM 504 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5445 ID=mRNA_5445|Name=jgi.p|Trimin1|150711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=621bp|location=Sequence derived from alignment at Contig_30:1089660..1090505- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGGTGCTGGAGCTGCGCGCAGTTTTCGGCTGGCGCCTATCGCCCGGGTAback to top protein sequence of jgi.p|Trimin1|150711 >Trimin1|150711|gw1.30.171.1 ID=Trimin1|150711|gw1.30.171.1|Name=jgi.p|Trimin1|150711|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp VVLELRAVFGWRLSPGYFDVFAQALQWYMRAAQPATPVSSAARGIPTVRDback to top mRNA from alignment at Contig_30:1089660..1090505- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5445 ID=mRNA_5445|Name=jgi.p|Trimin1|150711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=846bp|location=Sequence derived from alignment at Contig_30:1089660..1090505- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_30:1089660..1090505- >mRNA_5445 ID=mRNA_5445|Name=jgi.p|Trimin1|150711|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=621bp|location=Sequence derived from alignment at Contig_30:1089660..1090505- (Tribonema minus UTEX_B_3156 )back to top |