mRNA_5425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348756
Unique NamemRNA_5425
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348756 vs. uniprot
Match: A0A836CEK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK9_9STRA)

HSP 1 Score: 410 bits (1054), Expect = 1.120e-144
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 
Query:    1 MAAILGDDDSSRFHEEQLLDELVPANVNRIYSSKLFRVQVVAPAKCVKARVSTTVTVAPPDIDIGTVVLGVNGERYAICEAHPGRIFRTANGSDLAWEEVPGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMRALLQGNYTPAPRVQESARRSATPSTGNAAAPSSAVIDNWYAVAAPDGDVSAYCRIAQAQVRQLLAPSSSAGPPRSI 633
            MAAILGDDDSSRFHEEQLLDELVPANVNRIYSSKLFRVQVVAPAKCVKARVSTTVTVAPPDIDIGTVVLGVNGERYAICEAHPGRIFRTANGSDLAWEEVPGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMRALLQGNYTPAPRVQESARRSATPSTGNAAAPSSAVIDNWYAVAAPDGDVSAYCRIAQAQVRQLLAPSSSAGPPRSI
Sbjct:    1 MAAILGDDDSSRFHEEQLLDELVPANVNRIYSSKLFRVQVVAPAKCVKARVSTTVTVAPPDIDIGTVVLGVNGERYAICEAHPGRIFRTANGSDLAWEEVPGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMRALLQGNYTPAPRVQESARRSATPSTGNAAAPSSAVIDNWYAVAAPDGDVSAYCRIAQAQVRQLLAPSSSAGPPRSI 211
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BLAST of jgi.p|Trimin1|348756 vs. uniprot
Match: A0A835YZ84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ84_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.340e-73
Identity = 127/164 (77.44%), Postives = 128/164 (78.05%), Query Frame = 1 
Query:    7 AILGDDDSSRFHEEQLLDELVPANVNRIYSSKLFRVQVVAPAKCVKARVSTTVTVAPPDIDIGTVVLGVNGERYAI-------------------------------CEAHPGRIFRTANGSDLAWEEVPGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMR 405
            A  GDDDSSRFHE QLLDELVPANV+RIYSSKLFRVQVVAPAKCVKARVSTTVTV PPDIDIGTVVLGVNGERYAI                               CEAHPGRIFRTANGSDLAWEEV GCKTDISAGIATAEVRRFSSYAYGINLEEHKGMR
Sbjct:   45 AFFGDDDSSRFHEAQLLDELVPANVDRIYSSKLFRVQVVAPAKCVKARVSTTVTVTPPDIDIGTVVLGVNGERYAIWSAVVHSKLQARINIWGFMLRLEFAICTCSHCEAHPGRIFRTANGSDLAWEEVTGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMR 208
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348756 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CEK9_9STRA1.120e-144100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ84_9STRA1.340e-7377.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:870973..875607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348756|estExt_Genemark1.C_Ctg_300124
Hectar predicted targeting categoryother localisation
TranscriptId349078
TrackFilteredModels1
ProteinId348756
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348756gene_5425Tribonema minus UTEX_B_3156 geneContig_30 870973..875607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348756Trimin1|348756|estExt_Genemark1.C_Ctg_300124Tribonema minus UTEX_B_3156 polypeptideContig_30 870973..875607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5425_6exon_5425_6Tribonema minus UTEX_B_3156 exonContig_30 870973..871105 -
exon_5425_5exon_5425_5Tribonema minus UTEX_B_3156 exonContig_30 871697..871794 -
exon_5425_4exon_5425_4Tribonema minus UTEX_B_3156 exonContig_30 873184..873258 -
exon_5425_3exon_5425_3Tribonema minus UTEX_B_3156 exonContig_30 874249..874342 -
exon_5425_2exon_5425_2Tribonema minus UTEX_B_3156 exonContig_30 874436..874629 -
exon_5425_1exon_5425_1Tribonema minus UTEX_B_3156 exonContig_30 875566..875607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5425CDS_5425Tribonema minus UTEX_B_3156 CDSContig_30 875566..875607 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5425 ID=mRNA_5425|Name=jgi.p|Trimin1|348756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=636bp|location=Sequence derived from alignment at Contig_30:870973..875607- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCCATCCTTGGTGACGATGACAGCAGCAGATTCCACGAAGAGCA
ATTGCTAGATGAGCTCGTCCCCGCCAACGTCAACCGCATATATAGCTCCA
AGCTATTTAGAGTACAGGTGGTGGCGCCCGCGAAATGCGTCAAAGCTCGC
GTCAGCACAACCGTGACTGTCGCGCCGCCGGACATTGACATCGGCACCGT
TGTGCTTGGTGTTAACGGCGAGCGATACGCGATATGCGAGGCGCACCCAG
GGCGTATTTTCAGAACGGCGAATGGCTCTGACTTGGCCTGGGAGGAGGTC
CCAGGGTGCAAGACGGACATCAGTGCAGGGATCGCCACAGCGGAGGTGCG
CCGCTTCAGCAGTTATGCATACGGAATCAACTTGGAGGAGCACAAGGGCA
TGCGCGCACTGCTGCAGGGCAACTACACTCCTGCGCCGCGGGTTCAGGAG
TCCGCGCGCCGTTCCGCAACGCCGTCTACTGGCAATGCTGCGGCACCTTC
AAGCGCGGTGATTGACAACTGGTACGCAGTCGCGGCCCCTGATGGCGACG
TCAGCGCCTATTGCCGCATTGCACAGGCGCAGGTGCGGCAGCTGCTAGCC
CCCTCCAGCAGCGCAGGTCCCCCCAGGAGCATATAA
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protein sequence of jgi.p|Trimin1|348756

>Trimin1|348756|estExt_Genemark1.C_Ctg_300124 ID=Trimin1|348756|estExt_Genemark1.C_Ctg_300124|Name=jgi.p|Trimin1|348756|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp
MAAILGDDDSSRFHEEQLLDELVPANVNRIYSSKLFRVQVVAPAKCVKAR
VSTTVTVAPPDIDIGTVVLGVNGERYAICEAHPGRIFRTANGSDLAWEEV
PGCKTDISAGIATAEVRRFSSYAYGINLEEHKGMRALLQGNYTPAPRVQE
SARRSATPSTGNAAAPSSAVIDNWYAVAAPDGDVSAYCRIAQAQVRQLLA
PSSSAGPPRSI*
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mRNA from alignment at Contig_30:870973..875607-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5425 ID=mRNA_5425|Name=jgi.p|Trimin1|348756|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4635bp|location=Sequence derived from alignment at Contig_30:870973..875607- (Tribonema minus UTEX_B_3156 )
ATGGCAGCCATCCTTGGTGACGATGACAGCAGCAGATTCCACGTGAGTAC
TTGCTTCAATTGGCCTCCTTCTTGTTGAGTCATGCATTCGACATCAACAA
TGCACCTGCAGCATTTCAGCAGCGTTGGGCCAGTCAATTGGCTGCAAATA
CAAGCGCTCCTTGAACAGCACTGGCATGGCTGCCTCTCGTGCTCGCTGGC
GTGCTGCCACAGACCTGCTGCCACAGCAGGCTTGCAGGCATCTTCCCGAA
TCTCTGTTGTACATTTGCACTCCTTGGGGTATACAGGGGCCACATCAAAT
ACACACTCTCGCTTACACATGCTATCTAGGCTCAGTCAACGCTGACACAG
CTGTCAATCCACACGGTGGCCATGTCTATGTCTTACAATGGTTTTATCAC
ACACTTGATCAATTTGAGACATTCCACACATTTGCCATAGTGATAGGCAG
ACGCTTGTTTCGCACATCAACAGTAATGATCATGCCTATGCTTGTTATGT
ATACATGCGTTGCATTGTGAGCATGTGCAAGTGTGTGCTCAGCAAGTTGA
TCATCAATGCATGTTCAGGTCCGGATGTGGAGCTAACACCCATGCAGTGT
CTGAAAGCTCAGCTTGACGTACGATCGTACCCTTATCATCAACAATTAAT
ATCGAAGCATAGGATGTTGCAGCGTACCATGCATAAATGGATCACAATGG
ATGCGTCATGTAAGTAGTTAGCTCACACTCCATGCCAAGCGCACTGTGTC
ACAACCTGTTCTGTGCCCAACACATGCGCCCCACAAGCTCTTCTAAGCCT
ATGATGCTGGGATAACAACTGCAGTTGCTCATCCTGCTTGAGTTGCACCC
TCCATAGGTATTAGTACTGCAATGCATCACAAAACTTTCTCCTTACTGTG
CTGGCTGCGCAGCATGCACATAGCTGCCCTGAGTATTAACTTGAAAATCA
TCCGTTGTACTGCTACTGTTGTATGCAGGAAGAGCAATTGCTAGATGAGC
TCGTCCCCGCCAACGTCAACCGCATATATAGCTCCAAGCTATTTAGAGTA
CAGGTGGTGGCGCCCGCGAAATGCGTCAAAGCTCGCGTCAGCACAACCGT
GACTGTCGCGCCGCCGGACATTGACATCGGCACCGTTGTGCTTGGTGTTA
ACGGCGAGCGATACGCGATATGGTCTGCAGTTGTGCACAGCAAACTCCAA
GCGCGCATCAACATCTGGGGTTTCATGCTGCGACTGGAGTTCGCCATATG
CACCTGCTCACACAGCGAGGCGCACCCAGGGCGTATTTTCAGAACGGCGA
ATGGCTCTGACTTGGCCTGGGAGGAGGTCCCAGGGTGCAAGACGGACATC
AGTGCAGGGGTAAGTTCTGCTGCAAATCCTGTCACATTACGCTGTCCGGG
AATGGGCGTCCAAAATCAAAATTCTTTTTTTGCCAAGCCCTAGTTCTAAC
GGCTGGAACCCTACTTAGGTGCTGCGGTTTCCTCGGCTTTACTCTTGCTG
ATGACGGCGCGACTTGATGACGGGGCGACGTGGCGAAAGAATGATCACAC
TTTAATCGCATTCCCATAGTCGAGGCAAAGGCGACACGAGAGCATGCGAG
CTGGTGAGGGCGCATTGATGCTGCGGCTGTATCATGCGTCAAGCGCTTGG
CGTGCTCTTGCTTCACGCCTGAAGCGGGCTCGCTGCTGCTGTCTGCAGCT
GTCGCTGCATTTAGTTTTGTTTCTCGGAATCGAGCAAGCGAGCAAATGGC
GCAGCCCCAGAGAGAGAGCTGAGCACAGGAACATCGCGCGGAGCAGGTAC
ATTCGTAGCATATGGAGCAGCCGTTGTCGCGGTGCACACATGTGCGCGGC
AGGCAGCGCTTCGGGCGCTGGCGGTGCCCGGCGCAGCACCACGTCGACAC
GCTGCCATATAGCGCGCAGTCACAGCAGCACGGCTGCTGCTTAGCTAAAG
TGCTGAAGTGGTAGCACCTCCTGTCCTATCTTGAGCTGGCGCCCTGTGCA
AACGCAATTGCGGTGCATTCTGCTAGTGTCTTGCACTGATCACATGCTTG
TTTTGGCAGCTGCTTGCAAGCTGCTCTGCAATGGCGGCATCTCGAAGGTG
CAAAGTGTTGTAGGAGTCTTTGCGTGATTGTCCGGCGGTTGAGAGTCATG
TGCTTTCCGACCATTGTGCGCATTACCAACACTTTGTCAACCACCCAACG
TCCACAGGTTTTGCGCTCCTATCAGGAGAACTCATGTTTCTGGTGTTTGC
GGCATGCGTTCAAATGGCCATACAGGAAATCAAAGCAGTTTCAGTGGAGT
GATGTTTGATCAGTTATTGACCAGGTTTCTACTCTCGTTGTGCTCGCAGA
TCGCCACAGCGGAGGTGCGCCGCTTCAGCAGTTATGCATACGGAATCAAC
TTGGAGGAGCACAAGGGCATGCGCGTACACGCTATTCCGCAGATCGCTAG
AGCCCTAGGGCTGCCGTTGCCCAGTAGCTTCGAAATGATCATGAAAGCTA
CAGGAACGCCAGGCATGTCAAAGTATGCGGTCAACGCTTTCACCAACACT
ACAGTGTGCTATGTAATCGAGCCGCGCATGGTGACCACGACCATCAGTAA
TGATGACACTCGAGGAATGCAATTGGCCCCCGCAGCCAGTGGTCTGGGGG
GGGTGACTGTGAGTGTTGGGTCTGTGGGTCACACGACTGCACACCACGCT
GAGCAGAAGCAGGTGAGCAGCCAGCCAGGCATTAATTGTGGATCGCTTGG
GCCAGCATCCATTGTGCACACTGTAGTTAAGCGCGGGTGGTGGCCCTTCC
GGTCGACTACGAACAGACCTCTGCTCAGCACGTCCCCCCAGAAGAGCACA
GTCGGTGAAGCGGGAATGGCCACGATACATATTTACACGTCAGAGCAGGG
CGGGTTCGGGGTGGACACGTGGTGCACGGCGCATTTGGCCCCCGGTGAAG
GGCTATTGATCAGCCCGGAAAATGGCGTGTTCGCTCAGGTGCCATGCCTC
TCCAAAGATCCGGCCCCGTTCCCTGCTGTGATGAGTGCGCGGGGGTTTAA
GCAACTTGAAGGCAGAGCCACACTTGTGCGCAACGACCTCAGCACTGCTG
CCCCTGCTGCTGCTGCTGCTGCTGGTGGTGTGCCTCAGCCCATACCTCCT
CCCTAGTGATGTAGGGGCTCTGGTATGCCCTGCATAGGCATCTTCAAGCT
CAAACCCTAGTTGGAGTGTCCCCTCGATAATCCACAGCGTCAACTCTAAC
TGTACAACCACTCTCAGTCCCTGTCACAGCAAGCACTGCTGTTGTGGCCC
CACCACCACCAAATCAACCAGTGTCGGCCTTTCTGCTGCTCTGCTGTTCA
CCTGCAATCCCCATCCACGTCACTACTTAGGGGTGCTGGGATGCCCATGA
GGTAGGCAGGCCGCTGTGGTGACAGCCACTTGTTAGTACAGCATCGTAGT
GGTACGTCACCGCTGCTTCAGCTTGCGAGAAAACATTTGTTATGCCGCCG
CTTTTATGCTTCCCCTCCCCTGCGTTGTTTTACTTGTGTCTGTACGTCTT
GCAGCTTTATGATCTTTGCGGCACTTGCAGAGCCAATGCGTGTGTAGACT
TCACAGCAAGCCATGCCGACGTAGCAGTCCCCTGTTGCTGCAGATATTAT
TTATAAGTTGACGCTTTCACCAGGTGCCATTAAATCTTTGTGCAACACTT
TGCTTTTGTGAAGTAAAACACGGGCAACAAGCGGTCCGCAGTTTATTCAG
CAGTTTATTCCACTCCTACACATACCCAATGATGACTTTGGCGGTATGTC
ACGCGACGCCCAGGCACTGCTGCAGGGCAACTACACTCCTGCGCCGCGGG
TTCAGGAGTCCGCGCGCCGTTCCGCAACGCCGTCTACTGGCAATGCTGCG
GCACCTTCAAGGTCGCAACAGTGGTCCGCCAGCTTTGACTGCAGCGCACG
CGGTGTGTCGTTTTTGACTGCAATTATTCATGGAATACAAGTGTGTGTGT
GCGCTTGTGATAAGAGCGCACACTGCCGAAGGCAGCTGGATGGACCAGGG
TGCTAGTCATGTGCCTCCCGCATGCTCTACTTGTTGGTTCCGTCAAGCAA
GGCGCCTATCATCCTCACATAGCCATCATAATGAGATGTGCCATTATTGA
CCTCCAGGGAGTCGTGTACGCTACCTAAAAGCAAAACTGGAGAAAGAGAC
GGCATTGATTGGCACACACTTGCGATCACGTGCGTGTCGCCACCGCATGG
CACAAGGCACAAGCTCGTCAGCAGTCTACATTTCTAGCCGCACTCTGCCC
TTGTTGCATTTTCCGATCAGGCCCGTCCTTGAAACTCTGTGCACGCCCTG
GACCCCACTACACATACCCAATTTTGCAGCAGCCTTTGACGACTTTGGCG
CTATGTCGCGCAACACCCAGATGCTGCAGCAGGGCAACTACCGTGTGACA
CTCCTGCGCAGCGCTTGTCTTCTGGCGCCGGCGCACCTCCCGCACGCTAC
AGCGCGGTGATTGACAACTGGTACGCAGTCGCGGCCCCTGATGGCGACGT
CAGCGCCTATTGCCGCATTGCACAGGCGCAGGTGCGGCAGCTGCTAGCCC
CCTCCAGCAGCGCAGGTCCCCCCAGGAGCATATAA
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Coding sequence (CDS) from alignment at Contig_30:870973..875607-

>mRNA_5425 ID=mRNA_5425|Name=jgi.p|Trimin1|348756|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_30:870973..875607- (Tribonema minus UTEX_B_3156 )
ATGGCAGCCATCCTTGGTGACGATGACAGCAGCAGATTCCACGAAGAGCA
ATTGCTAGATGAGCTCGTCCCCGCCAACGTCAACCGCATATATAGCTCCA
AGCTATTTAGAGTACAGGTGGTGGCGCCCGCGAAATGCGTCAAAGCTCGC
GTCAGCACAACCGTGACTGTCGCGCCGCCGGACATTGACATCGGCACCGT
TGTGCTTGGTGTTAACGGCGAGCGATACGCGATATGCGAGGCGCACCCAG
GGCGTATTTTCAGAACGGCGAATGGCTCTGACTTGGCCTGGGAGGAGGTC
CCAGGGTGCAAGACGGACATCAGTGCAGGGATCGCCACAGCGGAGGTGCG
CCGCTTCAGCAGTTATGCATACGGAATCAACTTGGAGGAGCACAAGGGCA
TGCGCGCACTGCTGCAGGGCAACTACACTCCTGCGCCGCGGGTTCAGGAG
TCCGCGCGCCGTTCCGCAACGCCGTCTACTGGCAATGCTGCGGCACCTTC
AAGCGCGGTGATTGACAACTGGTACGCAGTCGCGGCCCCTGATGGCGACG
TCAGCGCCTATTGCCGCATTGCACAGGCGCAGGTGCGGCAGCTGCTAGCC
CCCTCCAGCAGCGCAGGTCCCCCCAGGAGCATATAA
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