mRNA_5419 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A835Z5V7_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V7_9STRA) HSP 1 Score: 591 bits (1524), Expect = 1.100e-211 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1 Query: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN Sbjct: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 314
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A485KR16_9STRA (Aste57867_10447 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR16_9STRA) HSP 1 Score: 313 bits (803), Expect = 3.510e-102 Identity = 178/314 (56.69%), Postives = 216/314 (68.79%), Query Frame = 1 Query: 13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVE---KPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 +RFDGL + +AQQ GI+PML S+F FLRRKTDFF+GAS D +EQ VL +RK+A I ERE RK E + KKR DA R K+E + + + +V D A + A ++ P A D+ N E +PP EGNGG+T+ Y WTQTL E VTIPVP GT S+ V + + L+AGLK Q P++DG+LHK++ VEDSFWTLED I + LQK+NQMEWWKS+I G AEIDT KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DEM KQ++L KFM HPEMDFSKAKIN Sbjct: 4 DRFDGLLMQMAQQQNGIEPMLSSIFGFLRRKTDFFSGASQDAIEQMVLGVLRKEAGIAERERYDRKMQEEAEKKKRLDAKRKKEEMEAATRKTQSRFEEVTDDEPV-----TKPAAAPAPVVAKLPKNPANDNDKEDNEEDDGEPPLEGNGGKTEHYAWTQTLQEAQVTIPVPDGTVSKQVSVELRGKTLRAGLKSQVPLIDGELHKRIKVEDSFWTLEDNNRICVYLQKENQMEWWKSIIVGHAEIDTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDEMGKQDILNKFMAAHPEMDFSKAKIN 312
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A484DVX6_BRELC (CS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVX6_BRELC) HSP 1 Score: 308 bits (788), Expect = 6.290e-100 Identity = 176/319 (55.17%), Postives = 223/319 (69.91%), Query Frame = 1 Query: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREEL-KRKKAAEEQAKKRADAL--RSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPE--GNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 MSE +RFD + LT+AQ +GI+P+L+++FSFLRRKTDFF+GA +E T+L +RKQA + E++E K++K AE++ K+ L R KK +K ++ P+ ++ I+ E AS T+K DE + E P GNGGRT+ YVWTQTL E V VP GTKSR V I L+ GL+G+ VDG+L+ KV V+DSFWTLED I + LQKDNQMEWWK++IQGD EIDT KVQPENSKL+DLDADTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+L+KFM QHPEMDFSKAK+N Sbjct: 1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFSGAEAQVIENTILKCVRKQAALAEKDEFTKKQKEAEKRRKEELADLKKRQKKHDKVKEDKNPPRFEEISDSDEMQISTLEQTMPIKAS--------TSKDVDEEGDEESGPSLVGNGGRTEKYVWTQTLQEAQVNFAVPAGTKSRQVDVEIRAGKLRVGLRGENTFVDGNLYNKVKVDDSFWTLEDGNRICVYLQKDNQMEWWKTIIQGDPEIDTQKVQPENSKLNDLDADTRQTVEKMMFDQRQKAMGLPTSDDMQKQEMLQKFMAQHPEMDFSKAKMN 311
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A329RXI0_9STRA (CS domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RXI0_9STRA) HSP 1 Score: 305 bits (782), Expect = 4.020e-99 Identity = 173/315 (54.92%), Postives = 222/315 (70.48%), Query Frame = 1 Query: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 MSE +RFD + LT+AQ +GI+P+L+++FSFLRRKTDFFTGA P +E T+L ++RKQA + E+++ +K+ + +KR KKE+++ +N P+ ++ D E ++A AS + +T+ K + PP GNGG+T+ YVWTQTL E V VP GTKSR V I L+ GL+G VDG L+ KV V+DSFWTLED I I LQKDNQMEWWK++IQGD EIDT KVQPENSKLDDLD+DTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+++KFM QHPEMDFSKAKIN Sbjct: 1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFTGAEPQVIEDTILKSVRKQAALAEKDQFHKKEQEAVKLEKR-----QKKEQEEKAKNP-PRFEEITDDNEI---EAKEATPEQASPQNT--STSTKVDXXXXXXNGPPLVGNGGQTNKYVWTQTLQEAQVNFAVPEGTKSRQVDVEIRAGKLRVGLRGGETFVDGPLYNKVKVDDSFWTLEDGNRICIYLQKDNQMEWWKTIIQGDTEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPTSDDMQKQEIMQKFMAQHPEMDFSKAKIN 304
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: G4ZU82_PHYSP (CS domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=G4ZU82_PHYSP) HSP 1 Score: 305 bits (780), Expect = 9.840e-99 Identity = 173/317 (54.57%), Postives = 211/317 (66.56%), Query Frame = 1 Query: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEK---PPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 MSE +RFD + LT+AQ +GI+P+L+++FSFLRRKTDFFTGA P +E T+L ++RKQA + E+++ +K+ A+ + +I + D AS A+P A +EG E P GNGG+TD YVWTQTL E V VP GTKSR V I L+ GL+G P VDG L+ KV V+DSFWTLED I I LQKDNQMEWWK++IQGDAEIDT KVQPENSKLDDLD+DTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+L+KFM QHPEMDFSKAKIN Sbjct: 1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFTGAEPQVIEDTILKSVRKQAALAEKDQFHKKQQE-------AEXXXXXXXXXXXXXXXXXXXXXXXAPRFEEITDDADVETKEASPEQASPQKVDAAANEGDEEEDNGPPLVGNGGQTDKYVWTQTLQEAQVNFAVPEGTKSRQVDVEIRAGKLRVGLRGAEPFVDGSLYNKVKVDDSFWTLEDGNRICIYLQKDNQMEWWKTIIQGDAEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPTSDDMQKQEILQKFMAQHPEMDFSKAKIN 310
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A024TE88_9STRA (CS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE88_9STRA) HSP 1 Score: 303 bits (776), Expect = 5.150e-98 Identity = 179/334 (53.59%), Postives = 218/334 (65.27%), Query Frame = 1 Query: 1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKR-------------ADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTA------KAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 MS+++RFDGL + +AQQ GI+PML S+F FLRRKTDFF+GA+ + +EQ VL +RK++ I ERE R+ E+ + +S+ EE E+V P V K+SA + +P T A AED+ + PP EGNGG+TD YVWTQTL E VTIPVP GT S+ VV + + LK GLK QP IVDGDLHKK+ VEDSFWTLED I + LQK+NQMEWWK ++ GD EIDT KVQPENSKL DLD +TR+TVEKMMFDQRQK MGLPT+DE+ KQE+L KFM HPEMDFSKAKIN Sbjct: 1 MSDEQRFDGLLMQMAQQQNGIEPMLTSVFGFLRRKTDFFSGATQEAIEQMVLTVVRKESAIAERERYDRRVQEEKXXXXXXXXXXXXXXXXXXSRKTQSRFEEITDDEDVVPSVP----------------VKTSAPVAAPSPVTAAPAPAGDNAEDDDKDDGAPPLEGNGGKTDNYVWTQTLQEAHVTIPVPQGTTSKQVVVDLRSKTLKVGLKSQPLIVDGDLHKKIKVEDSFWTLEDNNRICVYLQKENQMEWWKCIMVGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDELGKQEILNKFMKAHPEMDFSKAKIN 318
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A1V9YAM9_9STRA (Nuclear migration protein nudC n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAM9_9STRA) HSP 1 Score: 302 bits (773), Expect = 1.280e-97 Identity = 181/330 (54.85%), Postives = 211/330 (63.94%), Query Frame = 1 Query: 13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKR---------------ADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEK-----PPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 ERFDGL L +AQ QGI+PML +FSFLRRKTDFF+GAS DK+EQ VL +R++A + ERE RK+ A A+ S+ EE V + E + AAK T T+K D + P EGNGG+T+ YVWTQTL E V+IPVP GT SR V I + LK GLKGQP IVDG+LHK+V VEDSFWTLED I I LQK+NQ+EWWK +IQGDAEIDT KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM HPEMDFSKAK+N Sbjct: 4 ERFDGLLLQMAQAQQGIEPMLTGVFSFLRRKTDFFSGASQDKIEQMVLTVVRREAALAERERYDRKQXXXXXXXXXXXXXXXXXXXXXXXXAAAMESRFEELPDDAPVSAPTP---------VVEAKPAAK----------TVTSKPNDPANDXXXXXXXXPLEGNGGKTEHYVWTQTLQEAHVSIPVPEGTTSRQVAAEIRSKTLKVGLKGQPLIVDGELHKRVKVEDSFWTLEDGNRICIYLQKENQVEWWKCIIQGDAEIDTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELNKQEILKKFMAAHPEMDFSKAKLN 314
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A067CPV9_SAPPC (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPV9_SAPPC) HSP 1 Score: 299 bits (766), Expect = 1.320e-96 Identity = 178/329 (54.10%), Postives = 216/329 (65.65%), Query Frame = 1 Query: 13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKA----------------AEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTT--AKAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 ERFDGL L +AQQ QGI+PML S+FSFLRRKTDF+ GAS DKVEQ VL+ +R++A + ERE RK+ AE+ A+K A+ +E + ++ + + E + A + APT + PP EGNGG+T+ YVWTQTL E V+I VP GT SR V I + LK GLKGQP +VDG+LHK++ VEDSFWTLED I I LQK+NQMEWWK+VIQGD EI+T KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM HPEMDFSKAK+N Sbjct: 4 ERFDGLLLQMAQQQQGIEPMLTSVFSFLRRKTDFYAGASQDKVEQMVLNVLRREAALAERERYDRKQQXXXXXXXXXXXXXXXXAEDAARKAAE--------------MESRFEEIVDEPPAPVLEAKPMA-------TPAPTNNPASNGXXXXXXXXSPPLEGNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRQVFADIRAKTLKVGLKGQPLLVDGELHKRIKVEDSFWTLEDGNRICIYLQKENQMEWWKNVIQGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMAAHPEMDFSKAKLN 311
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A6G0XJW0_9STRA (CS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJW0_9STRA) HSP 1 Score: 297 bits (761), Expect = 6.830e-96 Identity = 170/318 (53.46%), Postives = 208/318 (65.41%), Query Frame = 1 Query: 13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGE-DAAKSSASALSAAPTTTAKAE-------DEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 +RFDGL + +AQQ QGI+PML S+F FLRRKTDFF+GA+ + +EQ VL+ +RK++ I ERE RK ++ +K +I + E A K + + P T K + DE + P EGNGG+TD YVWTQTL E VTIPVP GT S+ VV + + LK GLK QP ++DG+LHKK+ VEDSFWTLED+ I + LQK+NQMEWWK +I GD EIDT KVQPENSKL DLD +TR+TVEKMMFDQRQK MGLPT+DEM KQE+L KFM HPEMDFSKAKIN Sbjct: 4 DRFDGLLMQMAQQQQGIEPMLSSVFGFLRRKTDFFSGATQETIEQMVLNVLRKESAIAERERYDRK-------------VQEEKXXXXXXXXXXXXXXXXXXSRFEEITDDEVPATKPTPATNVVVPPKTQKVDNPANDDNDEENDGTPPLEGNGGKTDVYVWTQTLQEAQVTIPVPQGTVSKQVVVDLRSKTLKVGLKNQPLLIDGELHKKIKVEDSFWTLEDSNRICVYLQKENQMEWWKCIITGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDEMSKQEILNKFMAAHPEMDFSKAKIN 308
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A1W0A2R2_9STRA (Nuclear migration protein nudC n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2R2_9STRA) HSP 1 Score: 297 bits (761), Expect = 7.540e-96 Identity = 181/325 (55.69%), Postives = 206/325 (63.38%), Query Frame = 1 Query: 13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQ---------------AKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942 ERFDGL L +AQQ QGI+PML S+FSFLRRKTDFF+GAS DK+EQ VL +RK+A + ERE RK+ ++A + S+ EE E V P V E AK A P EGNGG+T+ YVWTQTL E V+I VP GT SR V I Q LK GLKGQP +VDG+LHK+V VEDSFWTLED I I LQK+NQMEWWK VI GD EI+T KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM HPEMDFSKAKIN Sbjct: 4 ERFDGLLLQMAQQQQGIEPMLTSVFSFLRRKTDFFSGASQDKIEQMVLQVLRKEAALAERERYDRKQQEXXXXXXXXXXXXXXXXXXTARKAAEMESRFEEITDDEPVVPAAAPVL----------EKQAKEGAXXXXXXXXXXXX-------XXXPLEGNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRMVAVDIRAQTLKVGLKGQPLLVDGELHKRVKVEDSFWTLEDGNRICIYLQKENQMEWWKCVINGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMSAHPEMDFSKAKIN 311 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1152bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCCGAGCAGGAGAGGTTTGATGGCTTATTCCTCACCCTGGCACAGCAback to top protein sequence of jgi.p|Trimin1|348753 >Trimin1|348753|estExt_Genemark1.C_Ctg_300118 ID=Trimin1|348753|estExt_Genemark1.C_Ctg_300118|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=315bp MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTback to top mRNA from alignment at Contig_30:831476..835958- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4483bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_30:831476..835958- >mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=945bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )back to top |