mRNA_5419 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348753
Unique NamemRNA_5419
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A835Z5V7_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V7_9STRA)

HSP 1 Score: 591 bits (1524), Expect = 1.100e-211
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1
Query:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN
Sbjct:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 314          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A485KR16_9STRA (Aste57867_10447 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR16_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.510e-102
Identity = 178/314 (56.69%), Postives = 216/314 (68.79%), Query Frame = 1
Query:   13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVE---KPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            +RFDGL + +AQQ  GI+PML S+F FLRRKTDFF+GAS D +EQ VL  +RK+A I ERE   RK   E + KKR DA R K+E +      + +  +V  D           A + A  ++  P   A   D+  N E   +PP EGNGG+T+ Y WTQTL E  VTIPVP GT S+ V   +  + L+AGLK Q P++DG+LHK++ VEDSFWTLED   I + LQK+NQMEWWKS+I G AEIDT KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DEM KQ++L KFM  HPEMDFSKAKIN
Sbjct:    4 DRFDGLLMQMAQQQNGIEPMLSSIFGFLRRKTDFFSGASQDAIEQMVLGVLRKEAGIAERERYDRKMQEEAEKKKRLDAKRKKEEMEAATRKTQSRFEEVTDDEPV-----TKPAAAPAPVVAKLPKNPANDNDKEDNEEDDGEPPLEGNGGKTEHYAWTQTLQEAQVTIPVPDGTVSKQVSVELRGKTLRAGLKSQVPLIDGELHKRIKVEDSFWTLEDNNRICVYLQKENQMEWWKSIIVGHAEIDTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDEMGKQDILNKFMAAHPEMDFSKAKIN 312          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A484DVX6_BRELC (CS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVX6_BRELC)

HSP 1 Score: 308 bits (788), Expect = 6.290e-100
Identity = 176/319 (55.17%), Postives = 223/319 (69.91%), Query Frame = 1
Query:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREEL-KRKKAAEEQAKKRADAL--RSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPE--GNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            MSE +RFD + LT+AQ  +GI+P+L+++FSFLRRKTDFF+GA    +E T+L  +RKQA + E++E  K++K AE++ K+    L  R KK +K  ++   P+  ++       I+  E      AS        T+K  DE  + E  P   GNGGRT+ YVWTQTL E  V   VP GTKSR V   I    L+ GL+G+   VDG+L+ KV V+DSFWTLED   I + LQKDNQMEWWK++IQGD EIDT KVQPENSKL+DLDADTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+L+KFM QHPEMDFSKAK+N
Sbjct:    1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFSGAEAQVIENTILKCVRKQAALAEKDEFTKKQKEAEKRRKEELADLKKRQKKHDKVKEDKNPPRFEEISDSDEMQISTLEQTMPIKAS--------TSKDVDEEGDEESGPSLVGNGGRTEKYVWTQTLQEAQVNFAVPAGTKSRQVDVEIRAGKLRVGLRGENTFVDGNLYNKVKVDDSFWTLEDGNRICVYLQKDNQMEWWKTIIQGDPEIDTQKVQPENSKLNDLDADTRQTVEKMMFDQRQKAMGLPTSDDMQKQEMLQKFMAQHPEMDFSKAKMN 311          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A329RXI0_9STRA (CS domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RXI0_9STRA)

HSP 1 Score: 305 bits (782), Expect = 4.020e-99
Identity = 173/315 (54.92%), Postives = 222/315 (70.48%), Query Frame = 1
Query:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            MSE +RFD + LT+AQ  +GI+P+L+++FSFLRRKTDFFTGA P  +E T+L ++RKQA + E+++  +K+    + +KR      KKE+++  +N  P+  ++  D      E ++A    AS  +   +T+ K +        PP  GNGG+T+ YVWTQTL E  V   VP GTKSR V   I    L+ GL+G    VDG L+ KV V+DSFWTLED   I I LQKDNQMEWWK++IQGD EIDT KVQPENSKLDDLD+DTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+++KFM QHPEMDFSKAKIN
Sbjct:    1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFTGAEPQVIEDTILKSVRKQAALAEKDQFHKKEQEAVKLEKR-----QKKEQEEKAKNP-PRFEEITDDNEI---EAKEATPEQASPQNT--STSTKVDXXXXXXNGPPLVGNGGQTNKYVWTQTLQEAQVNFAVPEGTKSRQVDVEIRAGKLRVGLRGGETFVDGPLYNKVKVDDSFWTLEDGNRICIYLQKDNQMEWWKTIIQGDTEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPTSDDMQKQEIMQKFMAQHPEMDFSKAKIN 304          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: G4ZU82_PHYSP (CS domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=G4ZU82_PHYSP)

HSP 1 Score: 305 bits (780), Expect = 9.840e-99
Identity = 173/317 (54.57%), Postives = 211/317 (66.56%), Query Frame = 1
Query:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEK---PPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            MSE +RFD + LT+AQ  +GI+P+L+++FSFLRRKTDFFTGA P  +E T+L ++RKQA + E+++  +K+         A+                       +    +I +  D     AS   A+P     A +EG   E    P  GNGG+TD YVWTQTL E  V   VP GTKSR V   I    L+ GL+G  P VDG L+ KV V+DSFWTLED   I I LQKDNQMEWWK++IQGDAEIDT KVQPENSKLDDLD+DTR+TVEKMMFDQRQKAMGLPT+D+MQKQE+L+KFM QHPEMDFSKAKIN
Sbjct:    1 MSETDRFDSMLLTIAQSQRGIEPLLDTVFSFLRRKTDFFTGAEPQVIEDTILKSVRKQAALAEKDQFHKKQQE-------AEXXXXXXXXXXXXXXXXXXXXXXXAPRFEEITDDADVETKEASPEQASPQKVDAAANEGDEEEDNGPPLVGNGGQTDKYVWTQTLQEAQVNFAVPEGTKSRQVDVEIRAGKLRVGLRGAEPFVDGSLYNKVKVDDSFWTLEDGNRICIYLQKDNQMEWWKTIIQGDAEIDTQKVQPENSKLDDLDSDTRQTVEKMMFDQRQKAMGLPTSDDMQKQEILQKFMAQHPEMDFSKAKIN 310          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A024TE88_9STRA (CS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TE88_9STRA)

HSP 1 Score: 303 bits (776), Expect = 5.150e-98
Identity = 179/334 (53.59%), Postives = 218/334 (65.27%), Query Frame = 1
Query:    1 MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKR-------------ADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTA------KAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            MS+++RFDGL + +AQQ  GI+PML S+F FLRRKTDFF+GA+ + +EQ VL  +RK++ I ERE   R+   E+                  +   +S+ EE    E+V P V                  K+SA   + +P T A       AED+  +   PP EGNGG+TD YVWTQTL E  VTIPVP GT S+ VV  +  + LK GLK QP IVDGDLHKK+ VEDSFWTLED   I + LQK+NQMEWWK ++ GD EIDT KVQPENSKL DLD +TR+TVEKMMFDQRQK MGLPT+DE+ KQE+L KFM  HPEMDFSKAKIN
Sbjct:    1 MSDEQRFDGLLMQMAQQQNGIEPMLTSVFGFLRRKTDFFSGATQEAIEQMVLTVVRKESAIAERERYDRRVQEEKXXXXXXXXXXXXXXXXXXSRKTQSRFEEITDDEDVVPSVP----------------VKTSAPVAAPSPVTAAPAPAGDNAEDDDKDDGAPPLEGNGGKTDNYVWTQTLQEAHVTIPVPQGTTSKQVVVDLRSKTLKVGLKSQPLIVDGDLHKKIKVEDSFWTLEDNNRICVYLQKENQMEWWKCIMVGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDELGKQEILNKFMKAHPEMDFSKAKIN 318          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A1V9YAM9_9STRA (Nuclear migration protein nudC n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAM9_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.280e-97
Identity = 181/330 (54.85%), Postives = 211/330 (63.94%), Query Frame = 1
Query:   13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKR---------------ADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEK-----PPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            ERFDGL L +AQ  QGI+PML  +FSFLRRKTDFF+GAS DK+EQ VL  +R++A + ERE   RK+                        A A+ S+ EE      V              + E + AAK          T T+K  D   +        P EGNGG+T+ YVWTQTL E  V+IPVP GT SR V   I  + LK GLKGQP IVDG+LHK+V VEDSFWTLED   I I LQK+NQ+EWWK +IQGDAEIDT KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM  HPEMDFSKAK+N
Sbjct:    4 ERFDGLLLQMAQAQQGIEPMLTGVFSFLRRKTDFFSGASQDKIEQMVLTVVRREAALAERERYDRKQXXXXXXXXXXXXXXXXXXXXXXXXAAAMESRFEELPDDAPVSAPTP---------VVEAKPAAK----------TVTSKPNDPANDXXXXXXXXPLEGNGGKTEHYVWTQTLQEAHVSIPVPEGTTSRQVAAEIRSKTLKVGLKGQPLIVDGELHKRVKVEDSFWTLEDGNRICIYLQKENQVEWWKCIIQGDAEIDTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELNKQEILKKFMAAHPEMDFSKAKLN 314          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A067CPV9_SAPPC (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPV9_SAPPC)

HSP 1 Score: 299 bits (766), Expect = 1.320e-96
Identity = 178/329 (54.10%), Postives = 216/329 (65.65%), Query Frame = 1
Query:   13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKA----------------AEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTT--AKAEDEGTNVEKPP-EGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            ERFDGL L +AQQ QGI+PML S+FSFLRRKTDF+ GAS DKVEQ VL+ +R++A + ERE   RK+                 AE+ A+K A+              +E +  ++  +    + E +  A       + APT    +           PP EGNGG+T+ YVWTQTL E  V+I VP GT SR V   I  + LK GLKGQP +VDG+LHK++ VEDSFWTLED   I I LQK+NQMEWWK+VIQGD EI+T KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM  HPEMDFSKAK+N
Sbjct:    4 ERFDGLLLQMAQQQQGIEPMLTSVFSFLRRKTDFYAGASQDKVEQMVLNVLRREAALAERERYDRKQQXXXXXXXXXXXXXXXXAEDAARKAAE--------------MESRFEEIVDEPPAPVLEAKPMA-------TPAPTNNPASNGXXXXXXXXSPPLEGNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRQVFADIRAKTLKVGLKGQPLLVDGELHKRIKVEDSFWTLEDGNRICIYLQKENQMEWWKNVIQGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMAAHPEMDFSKAKLN 311          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A6G0XJW0_9STRA (CS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJW0_9STRA)

HSP 1 Score: 297 bits (761), Expect = 6.830e-96
Identity = 170/318 (53.46%), Postives = 208/318 (65.41%), Query Frame = 1
Query:   13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGE-DAAKSSASALSAAPTTTAKAE-------DEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            +RFDGL + +AQQ QGI+PML S+F FLRRKTDFF+GA+ + +EQ VL+ +RK++ I ERE   RK             ++ +K                      +I + E  A K + +     P  T K +       DE  +   P EGNGG+TD YVWTQTL E  VTIPVP GT S+ VV  +  + LK GLK QP ++DG+LHKK+ VEDSFWTLED+  I + LQK+NQMEWWK +I GD EIDT KVQPENSKL DLD +TR+TVEKMMFDQRQK MGLPT+DEM KQE+L KFM  HPEMDFSKAKIN
Sbjct:    4 DRFDGLLMQMAQQQQGIEPMLSSVFGFLRRKTDFFSGATQETIEQMVLNVLRKESAIAERERYDRK-------------VQEEKXXXXXXXXXXXXXXXXXXSRFEEITDDEVPATKPTPATNVVVPPKTQKVDNPANDDNDEENDGTPPLEGNGGKTDVYVWTQTLQEAQVTIPVPQGTVSKQVVVDLRSKTLKVGLKNQPLLIDGELHKKIKVEDSFWTLEDSNRICVYLQKENQMEWWKCIITGDVEIDTKKVQPENSKLSDLDGETRQTVEKMMFDQRQKQMGLPTSDEMSKQEILNKFMAAHPEMDFSKAKIN 308          
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Match: A0A1W0A2R2_9STRA (Nuclear migration protein nudC n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2R2_9STRA)

HSP 1 Score: 297 bits (761), Expect = 7.540e-96
Identity = 181/325 (55.69%), Postives = 206/325 (63.38%), Query Frame = 1
Query:   13 ERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQTVLDAIRKQADILEREELKRKKAAEEQ---------------AKKRADALRSKKEEKQTQENVEPQVIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGNGGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPIVDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTTKVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFMDQHPEMDFSKAKIN 942
            ERFDGL L +AQQ QGI+PML S+FSFLRRKTDFF+GAS DK+EQ VL  +RK+A + ERE   RK+                      ++A  + S+ EE    E V P    V           E  AK  A                      P EGNGG+T+ YVWTQTL E  V+I VP GT SR V   I  Q LK GLKGQP +VDG+LHK+V VEDSFWTLED   I I LQK+NQMEWWK VI GD EI+T KVQPENSKL DLD DTR+TVEKMMFDQRQK MGLPT+DE+ KQE+LKKFM  HPEMDFSKAKIN
Sbjct:    4 ERFDGLLLQMAQQQQGIEPMLTSVFSFLRRKTDFFSGASQDKIEQMVLQVLRKEAALAERERYDRKQQEXXXXXXXXXXXXXXXXXXTARKAAEMESRFEEITDDEPVVPAAAPVL----------EKQAKEGAXXXXXXXXXXXX-------XXXPLEGNGGKTEHYVWTQTLQEAHVSIAVPNGTTSRMVAVDIRAQTLKVGLKGQPLLVDGELHKRVKVEDSFWTLEDGNRICIYLQKENQMEWWKCVINGDPEINTKKVQPENSKLSDLDGDTRQTVEKMMFDQRQKQMGLPTSDELSKQEILKKFMSAHPEMDFSKAKIN 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348753 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5V7_9STRA1.100e-211100.00HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A485KR16_9STRA3.510e-10256.69Aste57867_10447 protein n=1 Tax=Aphanomyces stella... [more]
A0A484DVX6_BRELC6.290e-10055.17CS domain-containing protein n=1 Tax=Bremia lactuc... [more]
A0A329RXI0_9STRA4.020e-9954.92CS domain-containing protein n=4 Tax=Peronosporace... [more]
G4ZU82_PHYSP9.840e-9954.57CS domain-containing protein n=15 Tax=Phytophthora... [more]
A0A024TE88_9STRA5.150e-9853.59CS domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A1V9YAM9_9STRA1.280e-9754.85Nuclear migration protein nudC n=1 Tax=Achlya hypo... [more]
A0A067CPV9_SAPPC1.320e-9654.10CS domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A6G0XJW0_9STRA6.830e-9653.46CS domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A1W0A2R2_9STRA7.540e-9655.69Nuclear migration protein nudC n=1 Tax=Thraustothe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:831476..835958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348753|estExt_Genemark1.C_Ctg_300118
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006457,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0016043,GO:0022402,GO:0030473,GO:0030705,GO:0031505,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046907,GO:0048285,GO:0051082,GO:0051179,GO:0051234,GO:0051276,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0072384,GO:0098813,GO:0099111,GO:0140014,GO:1903047
Preferred namenudc
Descriptionunfolded protein binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2265@1|root,KOG2265@2759|Eukaryota
Evalue3.75e-100
Seed ortholog157072.XP_008879598.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-25_003010.1
TranscriptId349075
TrackFilteredModels1
ProteinId348753
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348753gene_5419Tribonema minus UTEX_B_3156 geneContig_30 831476..835958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348753Trimin1|348753|estExt_Genemark1.C_Ctg_300118Tribonema minus UTEX_B_3156 polypeptideContig_30 831683..835958 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5419_6exon_5419_6Tribonema minus UTEX_B_3156 exonContig_30 831476..831721 -
exon_5419_5exon_5419_5Tribonema minus UTEX_B_3156 exonContig_30 832101..832184 -
exon_5419_4exon_5419_4Tribonema minus UTEX_B_3156 exonContig_30 832690..832905 -
exon_5419_3exon_5419_3Tribonema minus UTEX_B_3156 exonContig_30 833189..833355 -
exon_5419_2exon_5419_2Tribonema minus UTEX_B_3156 exonContig_30 834259..834436 -
exon_5419_1exon_5419_1Tribonema minus UTEX_B_3156 exonContig_30 835698..835958 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5419UTR3_5419Tribonema minus UTEX_B_3156 three_prime_UTRContig_30 831476..831682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5419CDS_5419Tribonema minus UTEX_B_3156 CDSContig_30 835698..835958 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1152bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGCAGGAGAGGTTTGATGGCTTATTCCTCACCCTGGCACAGCA
ATGCCAAGGTATCGATCCCATGCTGGAGTCCCTCTTTTCCTTCCTGAGGC
GCAAAACAGATTTCTTTACTGGCGCAAGCCCGGACAAGGTGGAGCAGACG
GTCCTTGACGCGATCAGGAAGCAGGCTGACATTCTGGAGCGGGAGGAGCT
GAAGCGCAAGAAAGCCGCTGAGGAGCAGGCCAAGAAAAGGGCGGACGCAT
TGCGGTCGAAGAAAGAGGAGAAGCAGACTCAAGAAAATGTGGAGCCGCAA
GTGATACAGGTTGGCAGCGATGGCGCATTTGACATTGCAGAAGGAGAGGA
CGCTGCCAAGTCATCCGCCTCAGCACTTTCAGCGGCACCAACCACGACTG
CCAAGGCTGAGGACGAGGGAACCAATGTGGAAAAACCACCGGAAGGCAAT
GGCGGCAGGACTGACACCTACGTGTGGACACAGACACTGAGCGAGCTGTC
CGTGACCATTCCCGTGCCTCCTGGCACAAAGTCCCGCGACGTTGTGTGCA
CCATTTCACGGCAGCACCTCAAAGCTGGGCTGAAAGGACAGCCCCCGATT
GTTGATGGGGATCTGCACAAGAAAGTGATAGTGGAGGACAGCTTCTGGAC
CCTTGAAGATGCACGCGAAATATCCATAGCACTGCAAAAGGACAACCAGA
TGGAGTGGTGGAAGTCCGTAATTCAGGGAGATGCTGAAATCGACACCACA
AAGGTGCAGCCAGAAAATTCCAAGCTCGATGACCTGGACGCCGACACCCG
CAAGACTGTGGAGAAAATGATGTTCGACCAGCGTCAAAAGGCCATGGGAC
TGCCAACAGCAGATGAGATGCAGAAGCAGGAACTGCTCAAAAAGTTCATG
GACCAGCATCCGGAGATGGACTTTTCCAAGGCCAAGATCAATTAGGCAAT
GGGCCAGGTGCACAACAGAAGTGTAACTGAGGCACAGCACATGCTCAGGC
ATTCGACGCATGAAGGCGTGTGGACCAGCACGTTCTTTTGGGCAGCCGCC
TGTGTCAGCACACCGTTCATGTGCGCCTGTGTGAATTGGCGACATCTGCA
ATGGGCATCATACATCATTGCATGCTCTCCTCAGTGCATCGCCTGCTTTT
TG
back to top

protein sequence of jgi.p|Trimin1|348753

>Trimin1|348753|estExt_Genemark1.C_Ctg_300118 ID=Trimin1|348753|estExt_Genemark1.C_Ctg_300118|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=315bp
MSEQERFDGLFLTLAQQCQGIDPMLESLFSFLRRKTDFFTGASPDKVEQT
VLDAIRKQADILEREELKRKKAAEEQAKKRADALRSKKEEKQTQENVEPQ
VIQVGSDGAFDIAEGEDAAKSSASALSAAPTTTAKAEDEGTNVEKPPEGN
GGRTDTYVWTQTLSELSVTIPVPPGTKSRDVVCTISRQHLKAGLKGQPPI
VDGDLHKKVIVEDSFWTLEDAREISIALQKDNQMEWWKSVIQGDAEIDTT
KVQPENSKLDDLDADTRKTVEKMMFDQRQKAMGLPTADEMQKQELLKKFM
DQHPEMDFSKAKIN*
back to top

mRNA from alignment at Contig_30:831476..835958-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4483bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )
ATGTCCGAGCAGGAGAGGTTTGATGGCTTATTCCTCACCCTGGCACAGCA ATGCCAAGGTATCGATCCCATGCTGGAGTCCCTCTTTTCCTTCCTGAGGC GCAAAACAGATTTCTTTACTGGCGCAAGCCCGGACAAGGTGGAGCAGACG GTCCTTGACGCGATCAGGAAGCAGGCTGACATTCTGGAGCGGGAGGAGCT GAAGCGCAAGAAAGCCGCTGAGGAGCAGGCCAAGAAAAGGGCGGACGCAT TGCGGTCGAAGGTCAGGGGCTTCATCTTTCACCCGTCTGATTTCAACGTT GGTGTAGTAAACTGGTGCATTGTAGCAGATATCCTGCATTACTCTATGAA AGGTCATGAGAAACTGCGATCCAATGCAGACTGTATATGTGCAACGTGCT GGCGGTCAATTTCTTTTTGGCTGGGACGACGACGCCTGTTCGAGAACAGT CGCAAACTTCACGCTTCACGTTGCCTTGATACTTTCATGAAAATGAGTTA AAAGATCGTCGAGCTCTCATGTTGGTGACCATGTGGGCATGCTATGTATC ACTAGTTATACCTTCGTCTACTGGCGTCTTCCAATCAAAAGTGCTCAACC ATTCCACTGCTTGTACTTCAATGGTCAGAGTCCAGGCTTTGCTGTAATGC TGACATGTGAATGTTCAATGTGGTCTAGAAAACATTGAAACGCTGTATGC CAAACAAGAAGCGTGTTACTTGCAGCAGAGCTAACTGCAACTTCACCGCA AGTCACATCCCATCAAGCAAGCTTAAGTGCATGCACTTCCCCATCCACCG CCTGTTTGGAGGAGTTGCAGCATGCCCCAACTCGCCAAGCTTGACATTTG CACAACAGCACTCTGCGCCATCAGGTCACTAGGGCTTTTGAGCTCTGCTG AAGCCTGAGAAACCCCATTGCGGTACATCCTGCACATTCGAACACCCAAA ACCTGAAAAAGTTCCCATCTGCCTGAGCTGGCTGGCACTCATCGTGCAGT GGTAGGTTAGCAAGCCACCGTACTGGCCCTGACGTTCGCGTTCTAAATGT TCAAGTTACAGGTATCAGCAGAAGCGTCATGCAAACCACCCGCTCACGAG CAGGCAGGCGATACTAGTGTGCACCGCCCAAGTCCATTGCCGCAGTGCAG CTCTGCCTGATAAGGTATCTATGACATCTGCAGATTTACATGTGAAAATA TAGACTTCTTTATGCGCATGTCAACATTGAAGGCATGCTGTTCACCAGGT GACATGCATTGTTGTGCAATAGACAAAGGTGATCATTGGCTTGCAGGGCT CTTGGCTCTTACACATGCATGTTTTGGACGCAATGTGCTCTCAACTGCCT TTCAAAAGACAGGCCTGCTGGATTGCTGATCTATTATCATCAATGCACAG AGTCTGAGTTGAAATCCTTCATCACAAAGGAGTATCTGATTACTTCCAGT ACTAAGACATGACTCAATGTTGGCAGTTGCATTCATTGCTGATCACTTGA ACCCTTTTTTTGTGTGTTTCAGAAAGAGGAGAAGCAGACTCAAGAAAATG TGGAGCCGCAAGTGATACAGGTTGGCAGCGATGGCGCATTTGACATTGCA GAAGGAGAGGACGCTGCCAAGTCATCCGCCTCAGCACTTTCAGCGGCACC AACCACGACTGCCAAGGCTGAGGACGAGGGAACCAATGTGGAAAAACCAC GTAAGTGGCGGATCACAGTTTGCTCTTAATTGAATAGTAAGGCAATCACT GTAGCATTACGTCAGCGCTGTGGTTGGTTTGTTGCTTGCAAAGTCGAGTC CAAGAGTATCTGCTGGACCTCTGTGTTAGGTTGTCCATGAAGCATTTGCA TGAGGCTTCACACTGCCGTCAACAAATCGCCTTCTCTTCATCGACCTCTT ATTGTGTCCTATTGAGAGCATGAAATGGAGGCATTACAAGTATAGCGCAC AACTACCTCTTCAAGTACCAATGGAAGAGAACCTCGTTGCGTGCGCTGCA TCCTTCACTAGGTAAGATTTGACACTTTGGCACTGATGGACACGAGCTGG TGACCAGTGACTGTGCCTTGCTGCAGCTGGATGCGGGCGGGACTCAATAC ACTCAACAAACATGCATCAGTAAAAGCACACATATGTAACTGGACAGTTT GCTGTCTTTGCGGCCACTTTATGTGTGTGTGATGTGATGACATCAGTTCT GTGCGAGCAGCAGGTGACAAGGTGCATCACCAAAGCTCATGTGCTTTTAC ATGCTATGGCCCTTTTGCTTTCAGGATGAAGCATGTGGCCCACAGCACTA CATGTCTTAGCCAAGTGCGATGTCGCATCAGTTCTGTGCGAGCAGTAGGT GACAAAACCAACTGCAATGTTGCATCAGTTCTGTACGAGCAGCAGGTCAC ACAATGCATCACCAAAGCTCGTGTGCCTTCACATGCTATGACTCTTCTGC ATTTACGTTGAAGCACATGGCCCACAGCAGCACATGTCTCAGCCAACTGC AGTGAAGAAACAACTCGTCTTGCCATCAGCTCAGCTGGCTGTCACACATG GCTAATGGCACAGCACTGACGCTCTCTTGTTGCACTGCGGCATGTTATTG CAGCGGAAGGCAATGGCGGCAGGACTGACACCTACGTGTGGACACAGACA CTGAGCGAGCTGTCCGTGACCATTCCCGTGCCTCCTGGCACAAAGTCCCG CGACGTTGTGTGCACCATTTCACGGCAGCACCTCAAAGCTGGGCTGAAAG GACAGCCCCCGATTGTTGATGTAAGTGACTGCAGGTGACTGGAATCGTCA TTGATGAGCCTCGTCATAGTCGTGTAAGCATGCGAGAGGTGTTGTAGACC TGGTATCATCTGTTGATTGGCACTGCTCATTACAGTATATAGGTCCTTTA GTTTAATTGAACTCGCTCAGGCAGCGAGCTGAGGCAGGTACATGGCAGTG TGCATTTTGCTGCAGTTGATTGCGTTGCACTTGTTGTTGAGTTTATGTAT AATCGTGCTGCAAGGCAGTCCTACAATGTTTGTGTTTGCTGATCCTGCTG CAGGGGGATCTGCACAAGAAAGTGATAGTGGAGGACAGCTTCTGGACCCT TGAAGATGCACGCGAAATATCCATAGCACTGCAAAAGGACAACCAGATGG AGTGGTGGAAGTCCGTAATTCAGGGAGATGCTGAAATCGACACCACAAAG GTGCAGCCAGAAAATTCCAAGCTCGATGACCTGGACGCCGACACCCGCAA GACTGTGGAGAAAATGATGGTGGGTGCTTATGCTTATGTGCCTACATGCG AAGCATGTTCCAAATAGTCCACAAGACCTTACTCTGTCATAGGAATGTGT GAGGCCATCTACAGTACTTGTTTTATTCGTGCTCGAGGCGCTCAAAGCAA TGTGAAAACGTAGCTTGACCGTGTTCATTGCAATGCTGTGCTTCATGCCA GTAAGGTCCAGTTGCCTCTACACAAAACCTGATCAGAACAATGATTGGAT GCACTACTACATGATTGCAAGCGATCAGGAACACACTGAGCATACACCAC AGTGCAAAAGCGGCTGCTCAGCAGGAAAATTGTCACACGTCGACTGCTGT AGGTAGGGCTTTGATGGCAGCCAATGTTGTGGATTGGGGCCATTACCATT TTTGGCATCAACCCACATTCTGGCATAATTACACCTGGACCGCAGAGCAA GCGCAAACGGACGTCTCAGTACATTGCTGATGACGGAAATGTCGACAATG CGTGCTTCTGTGTTGTTGTCACAGTTCGACCAGCGTCAAAAGGCCATGGG ACTGCCAACAGCAGATGAGATGCAGAAGCAGGAACTGCTCAAAAAGTTCA TGGACCAGGTATGTCGTTCATTGTGTTCAAGCGTTTGTTGTTGACTTGAT TGAACGTGTACTCCGCGGGCAGTGCTAGTGTTTGTCAAACACTTGCTTGC TTGTGCAGGCTCTGAAAACCTCAAGTCCTGCTATACACTGGTAAAATGAT AACCAGCCTGGTCATTTGCCTTTGCTTGCATTTACAGTATGTGTGCGTAC TTGGAGAATGTTTCATGAATTTTTGTTAGACATGAGGTCCTCTGGAGGTT TTCTTGAAGCGAGAGTGTTGACCAGCACAATACATCATGGTAGGAGTCTT TGTGGACATCATCGCTGTGCAGCAGCGCAACTCTGGAAATGGCCAACTGG TTGACGATGACGGTGCGCTGTTGCTCTTCAATCGCAGCATCCGGAGATGG ACTTTTCCAAGGCCAAGATCAATTAGGCAATGGGCCAGGTGCACAACAGA AGTGTAACTGAGGCACAGCACATGCTCAGGCATTCGACGCATGAAGGCGT GTGGACCAGCACGTTCTTTTGGGCAGCCGCCTGTGTCAGCACACCGTTCA TGTGCGCCTGTGTGAATTGGCGACATCTGCAATGGGCATCATACATCATT GCATGCTCTCCTCAGTGCATCGCCTGCTTTTTG
back to top

Coding sequence (CDS) from alignment at Contig_30:831476..835958-

>mRNA_5419 ID=mRNA_5419|Name=jgi.p|Trimin1|348753|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=945bp|location=Sequence derived from alignment at Contig_30:831476..835958- (Tribonema minus UTEX_B_3156 )
ATGTCCGAGCAGGAGAGGTTTGATGGCTTATTCCTCACCCTGGCACAGCA
ATGCCAAGGTATCGATCCCATGCTGGAGTCCCTCTTTTCCTTCCTGAGGC
GCAAAACAGATTTCTTTACTGGCGCAAGCCCGGACAAGGTGGAGCAGACG
GTCCTTGACGCGATCAGGAAGCAGGCTGACATTCTGGAGCGGGAGGAGCT
GAAGCGCAAGAAAGCCGCTGAGGAGCAGGCCAAGAAAAGGGCGGACGCAT
TGCGGTCGAAGAAAGAGGAGAAGCAGACTCAAGAAAATGTGGAGCCGCAA
GTGATACAGGTTGGCAGCGATGGCGCATTTGACATTGCAGAAGGAGAGGA
CGCTGCCAAGTCATCCGCCTCAGCACTTTCAGCGGCACCAACCACGACTG
CCAAGGCTGAGGACGAGGGAACCAATGTGGAAAAACCACCGGAAGGCAAT
GGCGGCAGGACTGACACCTACGTGTGGACACAGACACTGAGCGAGCTGTC
CGTGACCATTCCCGTGCCTCCTGGCACAAAGTCCCGCGACGTTGTGTGCA
CCATTTCACGGCAGCACCTCAAAGCTGGGCTGAAAGGACAGCCCCCGATT
GTTGATGGGGATCTGCACAAGAAAGTGATAGTGGAGGACAGCTTCTGGAC
CCTTGAAGATGCACGCGAAATATCCATAGCACTGCAAAAGGACAACCAGA
TGGAGTGGTGGAAGTCCGTAATTCAGGGAGATGCTGAAATCGACACCACA
AAGGTGCAGCCAGAAAATTCCAAGCTCGATGACCTGGACGCCGACACCCG
CAAGACTGTGGAGAAAATGATGTTCGACCAGCGTCAAAAGGCCATGGGAC
TGCCAACAGCAGATGAGATGCAGAAGCAGGAACTGCTCAAAAAGTTCATG
GACCAGCATCCGGAGATGGACTTTTCCAAGGCCAAGATCAATTAG
back to top