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Homology
BLAST of jgi.p|Trimin1|348742 vs. uniprot
Match: A0A836CEG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG1_9STRA) HSP 1 Score: 780 bits (2014), Expect = 1.640e-280 Identity = 508/508 (100.00%), Postives = 508/508 (100.00%), Query Frame = 1
Query: 1 MAPLPDGKASCQADQFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGERSQSIGVQAQQGAQHPGSLQFAATFPVSQTEYLELETARRHVPRRSRGTQPFDLRVVERILALDVGNGSAAAAATAAGSAMAPQRCSRKRQQRQSQARWCRAHTSGEMLCDTCRGPCCGXXXXXXXXXXXXXXDAIAAQTRLMAEMARMMRAVTGLVKERSGADXXXXXXXXXXXXXXXXXAVCSGIGAHATSHGDAAGGAAVQRTLSDARRNHEYTPPRLPSPGAQPAACAAPPFSPSAARLDFATAAAPRGPQHAGPAAGADAGAAEGELTRAGLLARVASQLERMEAEERRLAERLAPKRRSEERAAAALPLGALFALCDGAPPXXAAALLRSGSTEAYESLGTAMEVPAAPLLEAGAAAQGAGEGGXXXXXXXXXXXATWSIDVSLPSTEAAEIEEHRRAFLRHRRVQESALEGTGLRQCDVVELLADDIVKDLIAGCAGEIEGLFVDYAEKLLRRV 1524
MAPLPDGKASCQADQFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGERSQSIGVQAQQGAQHPGSLQFAATFPVSQTEYLELETARRHVPRRSRGTQPFDLRVVERILALDVGNGSAAAAATAAGSAMAPQRCSRKRQQRQSQARWCRAHTSGEMLCDTCRGPCCGXXXXXXXXXXXXXXDAIAAQTRLMAEMARMMRAVTGLVKERSGADXXXXXXXXXXXXXXXXXAVCSGIGAHATSHGDAAGGAAVQRTLSDARRNHEYTPPRLPSPGAQPAACAAPPFSPSAARLDFATAAAPRGPQHAGPAAGADAGAAEGELTRAGLLARVASQLERMEAEERRLAERLAPKRRSEERAAAALPLGALFALCDGAPPXXAAALLRSGSTEAYESLGTAMEVPAAPLLEAGAAAQGAGEGGXXXXXXXXXXXATWSIDVSLPSTEAAEIEEHRRAFLRHRRVQESALEGTGLRQCDVVELLADDIVKDLIAGCAGEIEGLFVDYAEKLLRRV
Sbjct: 1 MAPLPDGKASCQADQFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGERSQSIGVQAQQGAQHPGSLQFAATFPVSQTEYLELETARRHVPRRSRGTQPFDLRVVERILALDVGNGSAAAAATAAGSAMAPQRCSRKRQQRQSQARWCRAHTSGEMLCDTCRGPCCGXXXXXXXXXXXXXXDAIAAQTRLMAEMARMMRAVTGLVKERSGADXXXXXXXXXXXXXXXXXAVCSGIGAHATSHGDAAGGAAVQRTLSDARRNHEYTPPRLPSPGAQPAACAAPPFSPSAARLDFATAAAPRGPQHAGPAAGADAGAAEGELTRAGLLARVASQLERMEAEERRLAERLAPKRRSEERAAAALPLGALFALCDGAPPXXAAALLRSGSTEAYESLGTAMEVPAAPLLEAGAAAQGAGEGGXXXXXXXXXXXATWSIDVSLPSTEAAEIEEHRRAFLRHRRVQESALEGTGLRQCDVVELLADDIVKDLIAGCAGEIEGLFVDYAEKLLRRV 508
BLAST of jgi.p|Trimin1|348742 vs. uniprot
Match: A0A835Z1E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E2_9STRA) HSP 1 Score: 381 bits (978), Expect = 2.700e-126 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1
Query: 1 MFTTITVAAALCLVASPLVSAGSAPIPHAQRDLAESCFIYKNAGLPPSLAQQLDLFKEPVRVFCDAALAALDAGAYQTKAVNAPDPCDECETEPVACDCKTGCTAGGCDEGFVVGKQWCLFANIETCELTQDSXXXXXXXXXXXXXXXXXXXXXXXVACGACLPGFYGAQCAPCACGKGFLCDDGVAGTGACVKITPAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPPVAAADNGAPGIGDTASG 786
MFTTITVAAALCLVASPLVSAGSAPIPHAQRDLAESCFIYKNAGLPPSLAQQLDLFKEPVRVFCDAALAALDAGAYQTKAVNAPDPCDECETEPVACDCKTGCTAGGCDEGFVVGKQWCLFANIETCELTQDSXXXXXXXXXXXXXXXXXXXXXXXVACGACLPGFYGAQCAPCACGKGFLCDDGVAGTGACVKITPAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPPVAAADNGAPGIGDTASG
Sbjct: 1 MFTTITVAAALCLVASPLVSAGSAPIPHAQRDLAESCFIYKNAGLPPSLAQQLDLFKEPVRVFCDAALAALDAGAYQTKAVNAPDPCDECETEPVACDCKTGCTAGGCDEGFVVGKQWCLFANIETCELTQDSXXXXXXXXXXXXXXXXXXXXXXXVACGACLPGFYGAQCAPCACGKGFLCDDGVAGTGACVKITPAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAPPVAAADNGAPGIGDTASG 262
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|348742|estExt_Genemark1.C_Ctg_300093 |
| Max annot lvl | 2759|Eukaryota |
| EggNOG OGs | 2BZT3@1|root,2S2K9@2759|Eukaryota |
| Evalue | 0.000236 |
| Seed ortholog | 157072.XP_008861864.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 349064 |
| Track | FilteredModels1 |
| ProteinId | 348742 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5397 ID=mRNA_5397|Name=jgi.p|Trimin1|348742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1622bp|location=Sequence derived from alignment at Contig_30:630455..633270- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGCGCCGCTGCCAGACGGCAAGGCCAGCTGCCAAGCAGATCAGTTTGG
AGGCGGCGGAGCGGCGGCAGAGGGCACGGTCAGCGGTGCAGCAGCAGCAC
CACCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGGGGAGCGATCGCAG
AGCATAGGTGTGCAGGCCCAGCAAGGCGCGCAGCACCCAGGCAGCCTGCA
ATTTGCGGCAACGTTCCCCGTGTCGCAGACGGAGTACTTGGAGCTAGAAA
CAGCACGCCGTCACGTGCCACGCCGCAGCCGCGGCACCCAGCCGTTTGAC
CTGCGCGTCGTGGAACGCATACTGGCACTGGACGTGGGAAACGGCTCGGC
GGCAGCAGCTGCAACAGCAGCAGGCAGTGCGATGGCGCCACAGCGCTGCT
CACGCAAGCGGCAGCAGCGCCAGAGCCAGGCACGCTGGTGCCGTGCGCAC
ACATCCGGCGAGATGCTATGCGACACCTGCAGAGGTCCGTGCTGCGGCGG
CGGCGGCGGTGGCACTGGAGGCGGCAGCAGCGGCGGTGGCGACGCAATCG
CTGCGCAGACGCGGCTCATGGCGGAGATGGCGCGCATGATGCGCGCTGTG
ACAGGGCTGGTTAAGGAGAGGAGCGGCGCCGACAAGAGCGCCGATGGCGG
CAGAGGAGGTAGTCGGGCTGGCGGCGGAGGCAGCGCCGTTTGCAGCGGCA
TCGGCGCGCACGCCACCTCTCACGGAGATGCGGCAGGCGGTGCTGCCGTG
CAGCGCACCCTCAGCGACGCGCGTCGCAACCATGAGTACACGCCACCAAG
GCTCCCTTCGCCCGGTGCGCAGCCGGCAGCGTGCGCCGCGCCGCCATTCT
CGCCCAGCGCCGCGCGCCTCGACTTCGCCACCGCCGCGGCGCCGCGCGGT
CCCCAGCATGCAGGCCCTGCGGCAGGAGCGGACGCGGGCGCGGCGGAGGG
CGAGCTCACGCGCGCGGGGCTGCTGGCGCGCGTGGCGTCGCAGCTGGAGC
GCATGGAGGCCGAGGAGCGGCGCCTGGCGGAGAGGCTCGCGCCGAAGCGC
CGTTCTGAGGAACGCGCGGCGGCGGCGCTGCCGCTCGGCGCGCTCTTTGC
GCTGTGCGACGGCGCGCCGCCGCCGCCGGCCGCGGCACTGCTGAGGAGCG
GCTCGACTGAGGCTTATGAGTCTCTTGGCACTGCGATGGAGGTGCCCGCT
GCGCCGCTATTGGAGGCTGGCGCAGCGGCACAGGGGGCTGGGGAAGGGGG
TCAGGAGGCAGCTGCAGCGGCGGCGGCGGCGGCGGCGACGTGGAGCATCG
ATGTGAGCCTGCCAAGCACTGAGGCGGCGGAGATTGAGGAGCATCGCCGC
GCGTTTTTGCGGCACAGGCGCGTGCAGGAGTCGGCGCTGGAGGGCACAGG
TCTGAGGCAGTGCGACGTAGTGGAGCTGCTGGCAGATGACATAGTCAAGG
ACCTCATTGCCGGCTGCGCGGGCGAAATAGAGGGGCTGTTTGTAGACTAT
GCCGAAAAGCTGCTGCGCCGTGTGTGATGCGCATCCAAATGGACTACTCC
CAGGCAACAGCCTGACATGATGCCGGTCGCCGCCGTGTGTGATGTGTGTT
GTCACCTGTGAATAATAGACAG back to topprotein sequence of jgi.p|Trimin1|348742 >Trimin1|348742|estExt_Genemark1.C_Ctg_300093 ID=Trimin1|348742|estExt_Genemark1.C_Ctg_300093|Name=jgi.p|Trimin1|348742|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=509bp
MAPLPDGKASCQADQFGGGGAAAEGTVSGAAAAPPAAAAAAAAAAGERSQ
SIGVQAQQGAQHPGSLQFAATFPVSQTEYLELETARRHVPRRSRGTQPFD
LRVVERILALDVGNGSAAAAATAAGSAMAPQRCSRKRQQRQSQARWCRAH
TSGEMLCDTCRGPCCGGGGGGTGGGSSGGGDAIAAQTRLMAEMARMMRAV
TGLVKERSGADKSADGGRGGSRAGGGGSAVCSGIGAHATSHGDAAGGAAV
QRTLSDARRNHEYTPPRLPSPGAQPAACAAPPFSPSAARLDFATAAAPRG
PQHAGPAAGADAGAAEGELTRAGLLARVASQLERMEAEERRLAERLAPKR
RSEERAAAALPLGALFALCDGAPPPPAAALLRSGSTEAYESLGTAMEVPA
APLLEAGAAAQGAGEGGQEAAAAAAAAAATWSIDVSLPSTEAAEIEEHRR
AFLRHRRVQESALEGTGLRQCDVVELLADDIVKDLIAGCAGEIEGLFVDY
AEKLLRRV* back to topmRNA from alignment at Contig_30:630455..633270- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5397 ID=mRNA_5397|Name=jgi.p|Trimin1|348742|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2816bp|location=Sequence derived from alignment at Contig_30:630455..633270- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGCTGGTCAGTACGTGTCGCAGTTCGTGCGAGCTGCGCAAGCA
GCTGCGGAGAAGCGGTCTCTGCAGGCTGCTCAGCGCCTGCGTGCTGAGAG
AAAGCGCTCTATGGAAGCGTTGGAGAAAAAAGAGTCCCTCGGGGGAGAGC
GACCGTCCAGGGGCGAAAATGGCGGCGATGTCAACATCACCAGTTCACCG
GCACGAAGCGCCAGCAGCAGACGGCGCCAGCGCCCTGCCTGGAATGAAGA
CTTTGCCCTGCCTGAGAGCCAGACGGCAAGGCCAGCTGCCAAGCAGATCA
GTTTGGAGGCGGCGGAGCGGCGGCAGAGGGCACGGTCAGCGGTGCAGCAG
CAGCACCACCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGGGGAGCGA
TCGCAGTGTGCCTGCCATGCCTCGCAGCGTGCCAACAGAGGCTCGCCGCG
CCGCTCTTGCGCCCAGGATAGCCTCACCGCACAGCCCATTGCGTGGCGCG
GGCGACAGCGGCGCAGAATGGCCTGTCCATTCTCCACTCCTTTCTGCCAA
CCACCGCTGGCAGCAGCACCAGCGTGACGTGGGTGTAACAGTGGCTGCAG
CCATTGATCCTGCGCCACACTCACGGCCGGCGGAGACCGCAGCAGCAGAC
GGCAGCCGCCGCGCGTGCAGGAGCATAGGTGTGCAGGCCCAGCAAGGCGC
GCAGCACCCAGGCAGCCTGCAATTTGCGGCAACGTTCCCCGTGTCGCAGA
CGGAGTACTTGGAGCTAGAAACAGCACGCCGTCACGTGCCACGCCGCAGC
CGCGGCACCCAGCCGTTTGACCTGCGCGTCGTGGAACGCATACTGGCACT
GGACGTGGGAAACGGCTCGGCGGCAGCAGCTGCAACAGCAGCAGGCAGTG
CGATGGCGCCACAGCGCTGCTCACGCAAGCGGCAGCAGCGCCAGAGCCAG
GCACGCTGGTGCCGTGCGCACACATCCGGCGAGATGCTATGCGACACCTG
CAGAGGTCCGTGCTGCGGCGGCGGCGGCGGTGGCACTGGAGGCGGCAGCA
GCGGCGGTGGCGACGCAATCGCTGCGCAGACGCGGCTCATGGCGGAGATG
GCGCGCATGATGCGCGCTGTGACAGGGCTGGTTAAGGAGAGGAGCGGCGC
CGACAAGAGCGCCGATGGCGGCAGAGGAGGTAGTCGGGCTGGCGGCGGAG
GCAGCGCCGTTTGCAGCGGCATCGGCGCGCACGCCACCTCTCACGGAGAT
GCGGCAGGCGGTGCTGCCGTGCAGCGCACCCTCAGCGACGCGCGTCGCAA
CCATGAGTACACGCCACCAAGGCTCCCTTCGCCCGGTGCGCAGCCGGCAG
CGTGCGCCGCGCCGCCATTCTCGCCCAGCGCCGCGCGCCTCGACTTCGCC
ACCGCCGCGGCGCCGCGCGGTCCCCAGCATGCAGGCCCTGCGGCAGGAGC
GGACGCGGGCGCGGCGGAGGGCGAGCTCACGCGCGCGGGGCTGCTGGCGC
GCGTGGCGTCGCAGCTGGAGCGCATGGAGGCCGAGGAGCGGCGCCTGGCG
GAGAGGCTCGCGCCGAAGCGCCGTTCTGAGGAACGCGCGGCGGCGGCGCT
GCCGCTCGGCGCGCTCTTTGCGCTGTGCGACGGCGCGCCGCCGCCGCCGG
CCGCGGCACTGCTGAGGAGCGGCTCGACTGAGGCTTATGAGTCTCTTGGC
ACTGCGATGGAGGTGCCCGCTGCGCCGCTATTGGAGGCTGGCGCAGCGGC
ACAGGGGGCTGGGGAAGGGGGTCAGGAGGCAGCTGCAGCGGCGGCGGCGG
CGGCGGCGACGTGGAGCATCGATGTGAGCCTGCCAAGCACTGAGGCGGCG
GAGATTGAGGAGCATCGCCGCGCGTTTTTGCGGCACAGGCGCGTGCAGGA
GTCGGCGCTGGAGGGCACAGGTGATCAATCAGCACTTCAGCAGCTTTTGT
CGCGTGTTGTTGGTGACGTATTGCCGGTTCGCAGTAGCAGCATCGACGGA
GCGCGTGCGTTGGGCTGCAGTTGGCGAGTGTCCGGGGGCAATGCACACTG
CTCATAGTGGTGAAGGCCCTCACATAGTGTTGGAGGTCGCATCTGGTGCG
TTTGTTCAGAGTTGACTGCACTTGGTAGAGTGAACTCCTGTTGGCAGAGC
GTGTGAGATAAATGCACCTGCACCCTACACTAGCTGGTATGCAGCCATGC
ACATTGCGAGTACCATGTTTGCCCTCTGGTGACCTGAAAAGCCCTGACTG
TTCGCAACGTACGGTCGAGTGACATTGCAAGGCAGCAAGTTGCTCATCAT
GGTGGCGGAACAGGTGGCTTGTACCCCACGACTGTTGTCCTGCAGAGCAT
GTATGTTGCTGCACCTCCATTGCGGCACTATAACTTGGCAGTAAACCATG
CTTGATATGTCAAGACATTTTCACCATAATGCGCTGTTCAGGAGTCACAC
TCTGGCATGTTCAGCAGCATCATCAGCACCCGAAACAATCAAGTCATCCA
ATCAAGTCATCCACTGCAGTTGGCAAGTTGCGTTGAAGTGCGCCTGAGCA
ATGCTGACCGCGCGCCGCATTGTGCCATCCCGCTGGTACACAGGTCTGAG
GCAGTGCGACGTAGTGGAGCTGCTGGCAGATGACATAGTCAAGGACCTCA
TTGCCGGCTGCGCGGGCGAAATAGAGGGGCTGTTTGTAGACTATGCCGAA
AAGCTGCTGCGCCGTGTGTGATGCGCATCCAAATGGACTACTCCCAGGCA
ACAGCCTGACATGATGCCGGTCGCCGCCGTGTGTGATGTGTGTTGTCACC
TGTGAATAATAGACAG back to topCoding sequence (CDS) from alignment at Contig_30:630455..633270- >mRNA_5397 ID=mRNA_5397|Name=jgi.p|Trimin1|348742|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1527bp|location=Sequence derived from alignment at Contig_30:630455..633270- (Tribonema minus UTEX_B_3156 )
ATGGCGCCGCTGCCAGACGGCAAGGCCAGCTGCCAAGCAGATCAGTTTGG
AGGCGGCGGAGCGGCGGCAGAGGGCACGGTCAGCGGTGCAGCAGCAGCAC
CACCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGGGGAGCGATCGCAG
AGCATAGGTGTGCAGGCCCAGCAAGGCGCGCAGCACCCAGGCAGCCTGCA
ATTTGCGGCAACGTTCCCCGTGTCGCAGACGGAGTACTTGGAGCTAGAAA
CAGCACGCCGTCACGTGCCACGCCGCAGCCGCGGCACCCAGCCGTTTGAC
CTGCGCGTCGTGGAACGCATACTGGCACTGGACGTGGGAAACGGCTCGGC
GGCAGCAGCTGCAACAGCAGCAGGCAGTGCGATGGCGCCACAGCGCTGCT
CACGCAAGCGGCAGCAGCGCCAGAGCCAGGCACGCTGGTGCCGTGCGCAC
ACATCCGGCGAGATGCTATGCGACACCTGCAGAGGTCCGTGCTGCGGCGG
CGGCGGCGGTGGCACTGGAGGCGGCAGCAGCGGCGGTGGCGACGCAATCG
CTGCGCAGACGCGGCTCATGGCGGAGATGGCGCGCATGATGCGCGCTGTG
ACAGGGCTGGTTAAGGAGAGGAGCGGCGCCGACAAGAGCGCCGATGGCGG
CAGAGGAGGTAGTCGGGCTGGCGGCGGAGGCAGCGCCGTTTGCAGCGGCA
TCGGCGCGCACGCCACCTCTCACGGAGATGCGGCAGGCGGTGCTGCCGTG
CAGCGCACCCTCAGCGACGCGCGTCGCAACCATGAGTACACGCCACCAAG
GCTCCCTTCGCCCGGTGCGCAGCCGGCAGCGTGCGCCGCGCCGCCATTCT
CGCCCAGCGCCGCGCGCCTCGACTTCGCCACCGCCGCGGCGCCGCGCGGT
CCCCAGCATGCAGGCCCTGCGGCAGGAGCGGACGCGGGCGCGGCGGAGGG
CGAGCTCACGCGCGCGGGGCTGCTGGCGCGCGTGGCGTCGCAGCTGGAGC
GCATGGAGGCCGAGGAGCGGCGCCTGGCGGAGAGGCTCGCGCCGAAGCGC
CGTTCTGAGGAACGCGCGGCGGCGGCGCTGCCGCTCGGCGCGCTCTTTGC
GCTGTGCGACGGCGCGCCGCCGCCGCCGGCCGCGGCACTGCTGAGGAGCG
GCTCGACTGAGGCTTATGAGTCTCTTGGCACTGCGATGGAGGTGCCCGCT
GCGCCGCTATTGGAGGCTGGCGCAGCGGCACAGGGGGCTGGGGAAGGGGG
TCAGGAGGCAGCTGCAGCGGCGGCGGCGGCGGCGGCGACGTGGAGCATCG
ATGTGAGCCTGCCAAGCACTGAGGCGGCGGAGATTGAGGAGCATCGCCGC
GCGTTTTTGCGGCACAGGCGCGTGCAGGAGTCGGCGCTGGAGGGCACAGG
TCTGAGGCAGTGCGACGTAGTGGAGCTGCTGGCAGATGACATAGTCAAGG
ACCTCATTGCCGGCTGCGCGGGCGAAATAGAGGGGCTGTTTGTAGACTAT
GCCGAAAAGCTGCTGCGCCGTGTGTGA back to top
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