mRNA_5393 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164282
Unique NamemRNA_5393
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A836CEJ8_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ8_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.070e-68
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 MSERGSCSDXXXXXXXXXXXXXXXXXXXXXXXXKAGGTPRPRPPRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRAARGXXXXXXXXXXARATLQQKS 429
            MSERGSCSDXXXXXXXXXXXXXXXXXXXXXXXXKAGGTPRPRPPRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRAARGXXXXXXXXXXARATLQQKS
Sbjct:    1 MSERGSCSDXXXXXXXXXXXXXXXXXXXXXXXXKAGGTPRPRPPRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRAARGXXXXXXXXXXARATLQQKS 143
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.530e-17
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  136 KHVPEWAKGSQLKRALEAQYARTAP-DPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRA 363
            K +P WAKGS L  AL  QYA     DPD IF +V  +C+LE IF     RY +RGSSANW  D++TP EV+TYKR+
Sbjct:  193 KKIPAWAKGSALSEALTRQYATGQKVDPDKIFPEVF-TCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQEVLTYKRS 268
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A6H5KX29_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX29_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.560e-16
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  136 KHVPEWAKGSQLKRALEAQYARTAP-DPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRA 363
            K +P WAKGS L  AL  QYA     DPD IF +V  +C+LE IF     RY +RGSSANW  D++TP EV+TYKR+
Sbjct: 1439 KKIPAWAKGSALSEALTRQYATGQKVDPDKIFPEVF-TCDLEAIFPVTKSRYHRRGSSANWTPDRVTPQEVLTYKRS 1514
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A7S3XYD1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD1_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 1.060e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:  136 KHVPEWAKGSQLKRALEAQYA-RTAPDPDTIFDDVTQSCNLETIF-------ARKSGR-YGKRGSSANWAADKLTPAEVMTYKR 360
            K +PEWA+GS L RALE QY  R   DPD IF D  ++C+L  +F       AR++G+ Y  RGS+ NW AD+LT  E +TY+R
Sbjct:  143 KPIPEWAQGSALTRALERQYGGRRRIDPDAIFPDGFETCDLAQVFRACPGSAARRAGKSYSARGSTGNWQADRLTFVEKLTYRR 226
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: E1Z550_CHLVA (INCENP_ARK-bind domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z550_CHLVA)

HSP 1 Score: 72.0 bits (175), Expect = 6.770e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:  130 PRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRY--GKRGSSANWAADKLTPAEVMTYKRA 363
            P+K VPEWA+GSQL+  L AQ   T  DPD IF    ++C+L+ +FA    +    +R SS NW  D++T  E M+YKRA
Sbjct:  943 PKKPVPEWARGSQLRAQLVAQ---TYVDPDEIFQQHQKTCSLDEVFANGKSKQDLSRRTSSGNWIEDRVTWKEEMSYKRA 1019
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A2P6TWI9_CHLSO (LOV domain-containing n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWI9_CHLSO)

HSP 1 Score: 68.6 bits (166), Expect = 1.150e-10
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:  130 PRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYG--KRGSSANWAADKLTPAEVMTYKRA 363
            P+K VPEWAKG+QL+  L AQ   T  DPD IF    ++C+L+ +FA    +    +R SS NW  D++T  E + YKR+
Sbjct:  955 PKKPVPEWAKGNQLRAQLVAQ---TYVDPDEIFQQHQKTCSLDEVFANGKSKQDLTRRTSSGNWIDDRVTWREELAYKRS 1031
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A2FJZ0_TRIVA (INCENP_ARK-bind domain-containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FJZ0_TRIVA)

HSP 1 Score: 64.3 bits (155), Expect = 2.940e-9
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  136 KHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRAA 366
            K VP WA G  LK+ L  Q   +  DPDTIF + + +C LE +F + + ++  R  SA W  D LT  E+ ++K+ A
Sbjct:  403 KKVPNWAHGEGLKKCLIKQ---SKIDPDTIFPNFSNTCQLEVVFGKVNTKWQMRADSAKWDQDGLTAEEIKSFKKIA 476
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: UPI001E1E12AE (inner centromere protein-like isoform X2 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E12AE)

HSP 1 Score: 58.9 bits (141), Expect = 2.230e-7
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  130 PRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTP 336
            PRK +P+WA+GSQLK  L  Q+    P+ D +FD V ++ +L  +F +K  R+ KR SSA+W +  L P
Sbjct:  419 PRKKIPDWAQGSQLKTLLIKQHYHP-PNLDELFD-VIEAPDLNVLFEKKKARFNKRTSSAHWDSPILKP 485
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A8B6G4F2_MYTGA (Inner centromere protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6G4F2_MYTGA)

HSP 1 Score: 57.4 bits (137), Expect = 2.270e-7
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  130 PRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVM 348
            P+K +P WA G  LK AL  Q+    PD +++FD+++   +L  +F +K  R+ KR SSA+W +  + P  V+
Sbjct:  110 PKKRIPPWASGPNLKAALINQHYHP-PDLESMFDEISPP-DLNELFVKKKARFNKRTSSAHWDSPIMRPGSVV 180
[Close]
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Match: A0A6J8BIF0_MYTCO (INCENP n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BIF0_MYTCO)

HSP 1 Score: 57.4 bits (137), Expect = 8.310e-7
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  130 PRKHVPEWAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVM 348
            P+K +P WA G  LK AL  Q+    PD +++FD+++   +L  +F +K  R+ KR SSA+W +  + P  V+
Sbjct:  789 PKKRIPPWASGPNLKAALINQHYHP-PDLESMFDEISPP-DLNELFVKKKARFNKRTSSAHWDSPIMRPGSVV 859
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164282 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A836CEJ8_9STRA1.070e-68100.00INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
D8LJ56_ECTSI3.530e-1754.55INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A6H5KX29_9PHAE2.560e-1654.55SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XYD1_HETAK1.060e-1448.81Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
E1Z550_CHLVA6.770e-1246.25INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
A0A2P6TWI9_CHLSO1.150e-1043.75LOV domain-containing n=1 Tax=Chlorella sorokinian... [more]
A2FJZ0_TRIVA2.940e-938.96INCENP_ARK-bind domain-containing protein n=1 Tax=... [more]
UPI001E1E12AE2.230e-743.48inner centromere protein-like isoform X2 n=1 Tax=M... [more]
A0A8B6G4F2_MYTGA2.270e-736.99Inner centromere protein n=1 Tax=Mytilus galloprov... [more]
A0A6J8BIF0_MYTCO8.310e-736.99INCENP n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:621301..621732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164282|e_gw1.30.162.1
DescriptionInner centromere protein, ARK binding region
COG categoryD
Max annot lvl2836|Bacillariophyta
EggNOG OGsKOG4456@1|root,KOG4456@2759|Eukaryota,2XDFH@2836|Bacillariophyta
Evalue1.84e-16
Seed ortholog159749.K0SBK4
Hectar predicted targeting categoryother localisation
TranscriptId164604
TrackFilteredModels1
ProteinId164282
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164282gene_5393Tribonema minus UTEX_B_3156 geneContig_30 621301..621732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5393_1exon_5393_1Tribonema minus UTEX_B_3156 exonContig_30 621301..621732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5393CDS_5393Tribonema minus UTEX_B_3156 CDSContig_30 621301..621732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164282Trimin1|164282|e_gw1.30.162.1Tribonema minus UTEX_B_3156 polypeptideContig_30 621301..621732 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Trimin1|164282|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_30:621301..621732+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAGCGCGGGTCGTGCAGCGACGACGACGACGAGGAGGAGAGCGA
CGGCGGCGACAGCGACGGCGGGGGCGGCGGCGGGGGCGGCGGGGGGGGGA
AGGCGGGGGGGACGCCCCGGCCCCGGCCGCCGCGCAAGCACGTCCCCGAG
TGGGCCAAGGGGTCGCAGCTGAAGCGCGCGCTGGAGGCGCAGTACGCGCG
CACGGCGCCTGACCCGGACACGATCTTCGACGACGTCACGCAGTCGTGCA
ACCTCGAGACGATCTTCGCGCGCAAGAGCGGCCGCTACGGCAAGCGCGGC
AGCAGCGCCAACTGGGCCGCCGACAAGCTGACGCCGGCGGAGGTCATGAC
GTACAAGCGCGCGGCGCGCGGCGGCGGCGGTGGCGCGGCGGCACCGGCGG
CGGCGCGCGCCACGCTGCAGCAGAAGTCGTAG
back to top

protein sequence of jgi.p|Trimin1|164282

>Trimin1|164282|e_gw1.30.162.1 ID=Trimin1|164282|e_gw1.30.162.1|Name=jgi.p|Trimin1|164282|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MSERGSCSDDDDEEESDGGDSDGGGGGGGGGGGKAGGTPRPRPPRKHVPE
WAKGSQLKRALEAQYARTAPDPDTIFDDVTQSCNLETIFARKSGRYGKRG
SSANWAADKLTPAEVMTYKRAARGGGGGAAAPAAARATLQQKS*
back to top

mRNA from alignment at Contig_30:621301..621732+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Trimin1|164282|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_30:621301..621732+ (Tribonema minus UTEX_B_3156 )
ATGTCGGAGCGCGGGTCGTGCAGCGACGACGACGACGAGGAGGAGAGCGA
CGGCGGCGACAGCGACGGCGGGGGCGGCGGCGGGGGCGGCGGGGGGGGGA
AGGCGGGGGGGACGCCCCGGCCCCGGCCGCCGCGCAAGCACGTCCCCGAG
TGGGCCAAGGGGTCGCAGCTGAAGCGCGCGCTGGAGGCGCAGTACGCGCG
CACGGCGCCTGACCCGGACACGATCTTCGACGACGTCACGCAGTCGTGCA
ACCTCGAGACGATCTTCGCGCGCAAGAGCGGCCGCTACGGCAAGCGCGGC
AGCAGCGCCAACTGGGCCGCCGACAAGCTGACGCCGGCGGAGGTCATGAC
GTACAAGCGCGCGGCGCGCGGCGGCGGCGGTGGCGCGGCGGCACCGGCGG
CGGCGCGCGCCACGCTGCAGCAGAAGTCGTAG
back to top

Coding sequence (CDS) from alignment at Contig_30:621301..621732+

>mRNA_5393 ID=mRNA_5393|Name=jgi.p|Trimin1|164282|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_30:621301..621732+ (Tribonema minus UTEX_B_3156 )
ATGTCGGAGCGCGGGTCGTGCAGCGACGACGACGACGAGGAGGAGAGCGA
CGGCGGCGACAGCGACGGCGGGGGCGGCGGCGGGGGCGGCGGGGGGGGGA
AGGCGGGGGGGACGCCCCGGCCCCGGCCGCCGCGCAAGCACGTCCCCGAG
TGGGCCAAGGGGTCGCAGCTGAAGCGCGCGCTGGAGGCGCAGTACGCGCG
CACGGCGCCTGACCCGGACACGATCTTCGACGACGTCACGCAGTCGTGCA
ACCTCGAGACGATCTTCGCGCGCAAGAGCGGCCGCTACGGCAAGCGCGGC
AGCAGCGCCAACTGGGCCGCCGACAAGCTGACGCCGGCGGAGGTCATGAC
GTACAAGCGCGCGGCGCGCGGCGGCGGCGGTGGCGCGGCGGCACCGGCGG
CGGCGCGCGCCACGCTGCAGCAGAAGTCGTAG
back to top