mRNA_5387 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348733
Unique NamemRNA_5387
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A835Z441_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z441_9STRA)

HSP 1 Score: 590 bits (1520), Expect = 7.230e-206
Identity = 413/415 (99.52%), Postives = 413/415 (99.52%), Query Frame = 1 
Query:    1 MSGRKAVEAAVPAACAAIRNRILGPALDQLSDSAYDDVTPPHSSPSDGSWVGGSMRGSAETSPLKCDGEPRGGARAGGREGAMVAPFWPEDSFARLGQQMACSEEGRSLSRMVMDLGADLAHITLVDXXXXLARRPSVQRTIMRELGRMPLPPSLMDSDDEGXXXXXXXXXXXXXXXXXXGRGFGGAEHCESVLLSAGAKPSAAARARLPGVSDEGLKEELLRNVQDRVTKLTESLEAIRRENLHLRSRLTTTEAEKXXXXXXXXXXXXXXXAALARQLSAEDGGVAEVKGAVDKVVRDHLRSQQEARELWRAEGARGAATAAADAEARPAKSSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVALYFGVNPFLACAVAPDVTATAXXXXXXXXXXXXXXRSAWS 1245
            MSGRKAVEAAVPAACAAIRNRILGPALDQLSDSAYDDVTPPHSSPSDGSWVGGSMRGSAETSPLKCDGEPRGGARAGGREGAMVAPFWPEDSFARLGQQMACSEEGRSLSRMVMDLGADLAHITLVDXXXXLARRPSVQRTIMRELGRMPLPPSLMDSDDEGXXXXXXXXXXXXXXXXXXGRGFGGAEHCESVLLSAGAKPSAAARARLPGVSDEGLKEELLRNVQDRVTKLTESLEAIRRENLHLRSRLTTTEAEKXXXXXXXXXXXXXXXAALARQLSAEDGGVAEVKGAVDKVVRDHLRSQQEARELWRAEGARGAATAAADAEARPAKSSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVALYFGVNPFLACAVAPDVTATAXXXXXXXXXXXX  RSAWS
Sbjct:    1 MSGRKAVEAAVPAACAAIRNRILGPALDQLSDSAYDDVTPPHSSPSDGSWVGGSMRGSAETSPLKCDGEPRGGARAGGREGAMVAPFWPEDSFARLGQQMACSEEGRSLSRMVMDLGADLAHITLVDXXXXLARRPSVQRTIMRELGRMPLPPSLMDSDDEGXXXXXXXXXXXXXXXXXXGRGFGGAEHCESVLLSAGAKPSAAARARLPGVSDEGLKEELLRNVQDRVTKLTESLEAIRRENLHLRSRLTTTEAEKXXXXXXXXXXXXXXXAALARQLSAEDGGVAEVKGAVDKVVRDHLRSQQEARELWRAEGARGAATAAADAEARPAKSSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVALYFGVNPFLACAVAPDVTATAXXXXXXXXXXXXGARSAWS 415
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A836CIN0_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN0_9STRA)

HSP 1 Score: 317 bits (811), Expect = 4.800e-108
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 
Query:  133 MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD 612
            MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD
Sbjct:    1 MLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFGLRGTVKGLLIRWGAQGQALYGDLLAAGVPRWAALLGFTLCGLLVTLLLVLLGLQFQTREHLD 160
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A812VHP3_9DINO (Pdia6 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812VHP3_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 1.230e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            S A    +  +H LT   F+ TVR G   PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D      L+  + + G+PT+  V + G  Y F G+ ++ +L+AFA GGYR+
Sbjct:   20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SDGHRYRFRGSRTLDSLEAFAAGGYRE 135
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A484EI82_BRELC (Thioredoxin domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EI82_BRELC)

HSP 1 Score: 94.4 bits (233), Expect = 3.730e-20
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   52 TLVSKNLHVLTSITFEPTVRYGKG---GPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            ++ + N+ VLT   FE   + G G   G W++ F A WC HCK L PI++TVA+EL G+++ A +D  EN  L +RF++ GFPTI    + G VY +AG  +   L AFA  G+++
Sbjct:   20 SVATSNVIVLTDSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLTPIYETVAQELQGELNVAKVDVTENAELGKRFNIRGFPTILHF-SHGKVYKYAGKRTKDDLVAFARAGFKN 134
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A813C3A8_9DINO (Proline--tRNA ligase n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813C3A8_9DINO)

HSP 1 Score: 99.0 bits (245), Expect = 4.210e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            S A    +  +H LT   F+ TVR G   PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D      L+  + + G+PT+  V + G  Y F G+ ++ +L+AFA GGYR+
Sbjct:   20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SHGHRYRFRGSRTLDSLEAFAAGGYRE 135
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A812VIT4_SYMMI (Proline--tRNA ligase n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VIT4_SYMMI)

HSP 1 Score: 98.2 bits (243), Expect = 8.730e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            S A    +  +H LT   F+ TVR G   PW + F A WC HCK LAP+W+ +AE+L+G V+ A +D      L+  + + G+PT+  V + G  Y F G+ ++ +L+AFA GGYR+
Sbjct:   20 SDAVDPAATKVHELTGSNFDSTVRNGHEMPWFVKFHAPWCGHCKKLAPVWEKLAEKLEGTVALAKVDATVEEGLAYEWEIEGYPTLILV-SDGHRYRFRGSRTLDSLEAFAAGGYRE 135
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A813GR85_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GR85_POLGL)

HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1 
Query:   40 SKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAPFG 426
            S+A    ++N   LT   F   V+ G G PW +   A WC HC+ LAP+W  +A++L GQV    +D      L+ ++ V G+P I  + A G  + + G   +  L+AFALGG+ +AA  SS   PFG
Sbjct:   35 SRADQAAARNTLELTGENFSQAVQNGTGLPWFIKLYAPWCGHCQSLAPVWDDLAQKLQGQVVLGKVDATAEEVLAHKWEVDGYP-ILILFANGQAHLYTGPRCLAALEAFALGGWAEAASASSKEEPFG 162
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A196SKN1_BLAHN (Thioredoxin-related protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKN1_BLAHN)

HSP 1 Score: 92.8 bits (229), Expect = 1.280e-19
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:   55 LVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPT-IFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            L   N   LT +T   T      GPW + F A WC HCK LAP W+ +A+E+DG+V+ A +D   N ALS+ + + GFPT IFF D  G    + G  S+  LKAF L G++D
Sbjct:   21 LNDDNFETLTQMTTGSTT-----GPWFIMFFAPWCGHCKKLAPTWENLADEVDGEVNIAKVDATANNALSKMYSIEGFPTLIFFKD--GKYVKYEGGRSLEDLKAFVLEGFKD 126
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: H3G8D9_PHYRM (Thioredoxin domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8D9_PHYRM)

HSP 1 Score: 90.9 bits (224), Expect = 7.370e-19
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:   61 SKNLHVLTSITFEPTVRYGKG---GPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTASVTTLKAFALGGYRDAAKLSSAGAP 420
            + N+ VL++  FE   + G G   G W++ F A WC HCK L PI++TVA +L G+V+ A +D   N  L +RF + GFPT+    + G  Y FAG  ++  L AFA GG++       +GAP
Sbjct:   20 ASNVVVLSTSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDVTANSELGKRFGIRGFPTVLHF-SHGKSYKFAGKRTLEELSAFARGGFKSVEGEVVSGAP 141
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: A0A5B8MU99_9CHLO (Thioredoxin domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MU99_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 8.590e-19
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:   37 DSKASTLVSKNLHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPTIFFVDARGDVYAFAGTA-SVTTLKAFALGGYRDAAKLSSAGAPFGLRGTV 441
            +  A   ++KN   +  IT          GPWM+  +ASWC HCK L P W  +AE+L G+V    IDG EN+ LS+R HV G+PTIF VD +G +  +   A  +  L  FA+ GY+    L     P  L G +
Sbjct:   35 EGAAEGKLTKNAGEVVEITDSNYDNLIHDGPWMVVVSASWCPHCKQLEPTWVKLAEKLRGKVRVGKIDGPENKILSKRLHVVGYPTIFHVDRKGLIRDYGDQARDLEKLYQFAVSGYKQYEPLPWYHTPHSLFGQI 170
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Match: T0Q3S3_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3S3_SAPDV)

HSP 1 Score: 86.3 bits (212), Expect = 9.910e-16
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   70 LHVLTSITFEPTVRYGKGGPWMLAFTASWCKHCKVLAPIWQTVAEELDGQVSFASIDGWENRALSRRFHVAGFPT-IFFVDARGDVYAFAGTASVTTLKAFALGGYRD 390
            +  LT+ TF+  V       W++ F A WC HCK LAP +  ++++L+GQV  A +D  E+ AL  RF + GFPT +FF D  G +Y +AGT S+  L  F   GY +
Sbjct:  168 VEALTADTFDANVLAPGSNGWLVKFYAPWCGHCKQLAPTYDALSQDLNGQVHIAKVDVTEHEALGERFGIQGFPTLVFFKD--GKMYEYAGTRSLDALTTFVTSGYLE 273
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348733 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z441_9STRA7.230e-20699.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|348733 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIN0_9STRA4.800e-108100.00Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A812VHP3_9DINO1.230e-2040.17Pdia6 protein n=2 Tax=unclassified Symbiodinium Ta... [more]
A0A484EI82_BRELC3.730e-2041.38Thioredoxin domain-containing protein n=1 Tax=Brem... [more]
A0A813C3A8_9DINO4.210e-2040.17Proline--tRNA ligase n=1 Tax=Symbiodinium necroapp... [more]
A0A812VIT4_SYMMI8.730e-2040.17Proline--tRNA ligase n=2 Tax=Symbiodinium microadr... [more]
A0A813GR85_POLGL1.010e-1937.21Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A196SKN1_BLAHN1.280e-1943.36Thioredoxin-related protein n=1 Tax=Blastocystis s... [more]
H3G8D9_PHYRM7.370e-1939.84Thioredoxin domain-containing protein n=1 Tax=Phyt... [more]
A0A5B8MU99_9CHLO8.590e-1938.24Thioredoxin domain-containing protein n=1 Tax=Chlo... [more]
T0Q3S3_SAPDV9.910e-1640.74Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_30contigContig_30:573109..579414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348733|estExt_Genemark1.C_Ctg_300083
Hectar predicted targeting categoryother localisation
TranscriptId349055
TrackFilteredModels1
ProteinId348733
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348733gene_5387Tribonema minus UTEX_B_3156 geneContig_30 573109..579414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348733Trimin1|348733|estExt_Genemark1.C_Ctg_300083Tribonema minus UTEX_B_3156 polypeptideContig_30 573109..578847 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5387_1exon_5387_1Tribonema minus UTEX_B_3156 exonContig_30 573109..573159 +
exon_5387_2exon_5387_2Tribonema minus UTEX_B_3156 exonContig_30 574180..574425 +
exon_5387_3exon_5387_3Tribonema minus UTEX_B_3156 exonContig_30 575067..575142 +
exon_5387_4exon_5387_4Tribonema minus UTEX_B_3156 exonContig_30 575279..575469 +
exon_5387_5exon_5387_5Tribonema minus UTEX_B_3156 exonContig_30 576291..576404 +
exon_5387_6exon_5387_6Tribonema minus UTEX_B_3156 exonContig_30 576865..576957 +
exon_5387_7exon_5387_7Tribonema minus UTEX_B_3156 exonContig_30 577032..577076 +
exon_5387_8exon_5387_8Tribonema minus UTEX_B_3156 exonContig_30 577536..577698 +
exon_5387_9exon_5387_9Tribonema minus UTEX_B_3156 exonContig_30 578245..578341 +
exon_5387_10exon_5387_10Tribonema minus UTEX_B_3156 exonContig_30 578676..579414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5387CDS_5387Tribonema minus UTEX_B_3156 CDSContig_30 573109..573159 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5387UTR3_5387Tribonema minus UTEX_B_3156 three_prime_UTRContig_30 578848..579414 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5387 ID=mRNA_5387|Name=jgi.p|Trimin1|348733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1815bp|location=Sequence derived from alignment at Contig_30:573109..579414+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGTCGCAAGGCCGTGGAGGCGGCTGTCCCAGCGGCCTGCGCAGC
TATCCGCAACCGCATCCTGGGACCAGCGCTGGACCAGCTCTCGGACAGCG
CGTACGACGACGTCACCCCGCCGCACTCCTCCCCCTCTGACGGCAGCTGG
GTGGGGGGCAGCATGAGGGGGTCCGCTGAGACGTCACCGTTGAAGTGCGA
CGGGGAGCCACGCGGCGGCGCACGCGCGGGGGGGCGGGAGGGGGCGATGG
TGGCTCCGTTCTGGCCCGAGGACTCTTTCGCGCGGCTCGGCCAGCAGATG
GCGTGCAGCGAGGAGGGGCGGTCGCTGTCGCGCATGGTGATGGACCTCGG
CGCGGACCTCGCGCACATCACACTCGTGGACCTCGGCGCGGACCTAGCGC
GTCGGCCCAGCGTGCAGCGCACCATCATGCGCGAGCTCGGGCGCATGCCG
CTGCCGCCGTCGCTCATGGACTCGGACGACGAGGGGGACGATGATGAGGA
GGGGGAGGAGGAGGGGGAGGGGCGGGGGGAGGGGGAGGGGGGGCGAGGCT
TCGGCGGCGCTGAGCACTGCGAGTCAGTCCTGCTCTCCGCTGGCGCAAAG
CCATCAGCAGCGGCGCGTGCGCGGCTGCCCGGCGTGAGCGACGAGGGCCT
CAAGGAAGAGCTCCTGCGTAACGTTCAGGACCGCGTCACAAAGCTCACGG
AGAGCCTGGAGGCGATCCGCAGGGAGAACCTGCACCTGCGCTCGCGCCTC
ACCACGACGGAGGCGGAGAAGAACTGCCACCTGCGCCCGCGCCTCACCGC
GACCGAGGCGGAGAAGGCGGCGCTGGCGCGGCAGCTGAGCGCGGAGGACG
GCGGCGTGGCGGAGGTCAAGGGCGCCGTGGACAAGGTTGTGCGCGACCAC
CTCAGGAGCCAGCAGGAGGCGCGCGAGCTGTGGCGTGCGGAGGGGGCGCG
GGGGGCGGCAACGGCGGCGGCAGATGCAGAAGCGCGACCAGCGAAGAGCT
CTCGTCAGCAGCCGCCACAGAGTGGCCTGCCGCCGAGCAGCAAGGAGGCG
CGGCGCCGGCGCAGGCATATTTACAGGCTGGCGGCAGCAGGCGTCGCCAG
TGTCATAGTGGTCGCCGCAGTGGCGCTATACTTTGGCGTGAACCCTTTCC
TGGCGTGCGCAGTGGCGCCGGACGTCACAGCGACCGCCGCCACCGCCGCC
GCCGCTGCCGCCGCGGCGGCTAAGGGCGCGCGCAGCGCGTGGTCGTAAGG
CAGTGCTCACGGCGACGGTAAATACTTCATCAGCTAGCTCAGCAGCAGCA
GCAGCAGCAGCAGGAGGCACTTTGTTGCGATGCCCACCTCGGCAACACAT
CACAATTAGCGTGGTACAAAGCGGGGGGCGAGAGGCGCCAGGCAGGCAGG
AGCGGAGGTGCAGCAGCAGCAGCAGCGGCGGCAGCAGCGGCAGCGCATAT
AAGCCCGGCGACTTGTGTGAAGAGAGTGCGCGGGGGGGGAGGGGCGATAA
CGAGACCTGACCAGTGTGGCGTGCAGTGAAGTGGGTTAACTGCCGCTTGT
GTAGATGAATGGCCGCGCCGCGGACGGCGGCGCCTGTGCATACATAGCTC
ACCGCGAAGCGAGTGGCAGCTGGGCTTCAGCGCAGCCCAGGGGCTGAAAT
ACGGGGGGGCGTTTTTCTAAAAGTGTGTATGGGGGGTTTTCAGGAGGCGG
CAGAACTGCGGTGCGGCGAGTTGCCCTTGCAGTTGGCGTGTGTGGTCGCA
GGCCCTGTGCGAGGCAACACAGGGTTTGCGGTCCTGGTAAAGCCGTTGTA
AACTGGTGCGCAGCA
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protein sequence of jgi.p|Trimin1|348733

>Trimin1|348733|estExt_Genemark1.C_Ctg_300083 ID=Trimin1|348733|estExt_Genemark1.C_Ctg_300083|Name=jgi.p|Trimin1|348733|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=416bp
MSGRKAVEAAVPAACAAIRNRILGPALDQLSDSAYDDVTPPHSSPSDGSW
VGGSMRGSAETSPLKCDGEPRGGARAGGREGAMVAPFWPEDSFARLGQQM
ACSEEGRSLSRMVMDLGADLAHITLVDLGADLARRPSVQRTIMRELGRMP
LPPSLMDSDDEGDDDEEGEEEGEGRGEGEGGRGFGGAEHCESVLLSAGAK
PSAAARARLPGVSDEGLKEELLRNVQDRVTKLTESLEAIRRENLHLRSRL
TTTEAEKNCHLRPRLTATEAEKAALARQLSAEDGGVAEVKGAVDKVVRDH
LRSQQEARELWRAEGARGAATAAADAEARPAKSSRQQPPQSGLPPSSKEA
RRRRRHIYRLAAAGVASVIVVAAVALYFGVNPFLACAVAPDVTATAATAA
AAAAAAAKGARSAWS*
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mRNA from alignment at Contig_30:573109..579414+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5387 ID=mRNA_5387|Name=jgi.p|Trimin1|348733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6306bp|location=Sequence derived from alignment at Contig_30:573109..579414+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTCGCAAGGCCGTGGAGGCGGCTGTCCCAGCGGCCTGCGCAGC
TGTGAGCGCGGCCAGCGCCTACATGGCCTCCTGCGATGCCTCAGTTGCAC
CGTCGCCTGCGCAGCAACCTCGCTCTCCAGGCTCGCAGCAGAATGGAAGC
TGGCTTGTCTGGACAGCTGCCAGCGCAGTGAGCGCGGGCGGGAGCGCGAG
CGGCCAATCGACGCTGTCTCTGCACCCCTGGGACAGCAGAACGAGCAGAG
ATAACTCGTCTTCGTCTCAGCAGCAGCATCAGCAGCAACCTGCCAGGAAG
CAGGAGCCTGAGGCGGCAGGTGGAGCAGCCGAGAGATCGGGTCCATCAGC
TGTCGATGGCTACAGCGGCGTACAAGGATCATTGGATATGTGCTTGCAGA
TAGCCGAACGAGAGGTGAGGGGGTGCAGGGGTGCTGGCACTTGAGTAACG
GTGGTACTGAACTCTGCAGCTCCTGGCGATGCTTGACACACGAGTTGTGT
AGGATGTTCCCCATGCACACAGAGCACCGGTATGCTGGGCCTAAGCGAGG
AGCGCTTGATTGGTGAGCGCTGTGCACATCAATGTGCACGCGAGACGCCG
CCAAACGCATATGCAGTCCACCATGGCACAACCTGCCTCAGGTTTCTGGG
GTGCAACACTCACAAATGTGGCAGCCGTAGTCTCGGAAGGCCACCCCTTT
TTTGCCTTGCTGCGGCTTTCTCACATGTGCAGTGTTTGACATGCGCAGCC
CGTTCAATACAGCATGCATCATACCTGTGGTGCCACAACTGTCCTCACCA
AATCACGCATCGTCCACATCTTGCACGCTGGTGCTGCGGCTCCTCGCGCT
CCACAGCGTCACTGCCGCCGTCGCTTGTGCGAATGACATTGCATTTACTC
TCATGTACACGTGCAGCACATTGTAGACTGCTGAACCCTCTCTCACTGAG
CACGCTTCCATCACCACCCCCCATGCGTCACCAGCATCAGCCACACCCCG
CTGATGCTCATCCCCCTGACGCTCCCCCCCCCCCCCCCCCCCGCCCCCCA
TGCGCTCACTGCCGCCGCCAGATCCGCAACCGCATCCTGGGACCAGCGCT
GGACCAGCTCTCGGACAGCGCGTACGACGACGTCACCCCGCCGCACTCCT
CCCCCTCTGACGGCAGCTGGGTGGGGGGCAGCATGAGGGGGTCCGCTGAG
ACGTCACCGTTGAAGTGCGACGGGGAGCCACGCGGCGGCGCACGCGCGGG
GGGGCGGGAGGGGGCGATGGTGGCTCCGTTCTGGCCCGAGGACTCTTTCG
CGCGGCTCGGCCAGCAGGTGCGTCATCAGTTGAAGTTGTGATATCTGCCT
ACGCACATGCGCGCCACTGCGCCTAAGGGCGCGCACGCGCGCCCTTACAT
TTTACATATGATGTCTTCCAGCCAGCGGAGGTCGATCTGGCGACTGCAGT
CGGCGCGCGCGCGCCAGCAGCGGCACCGCTCTGCTGACGCCTAATGCCTC
ATGCCTTATGCTGACGCGCCGCTGCGCCGGATGGCATACAGCGAGGAGGG
GCGCTCGCTGTGCACATCGCGCCGCTCACATTGAGTGCGATATATAATTC
TCAACCACAAAAACTGAGCAGCACTGCCGATCCGCTAAACCCTCACGCCT
CACATCCTACGCGCTGCGCCACAGATGGCGTGCAATGAGGAGGGCCGCTC
GCTGCCCAATCCGCTAGCAACGCTCACGCTACAGTCACTCCGCGCCGCAA
TCACATATGGCCCCTCAGCAGCGTGACCGCTCCGCTGACGCCTCGCGCCT
CACACCCTATGCGCTGCTGTGCCACAGATGGCGTGCAGCGAGGAGGGCCG
TCCACAATCACACGCAATACATCGATTTCGACCGTGAAAGTCTGAGCACC
ATCGCCGCTTTGCGGACGCTGACGCCTCACGCCTGGCACCCCATGCGCTG
CGCCACAGATGGCGTGCAGCGAGGAGGGGCGGTCGCTGTCGCGCATGGTG
ATGGACCTCGGCGCGGACCTCGCGCACATCACACGTGCTACATCAATTAC
AATCATGAAAGATCTTAGCACCATCGCCGCGGCGCTGACGCTGACGCCTC
ACGCCTCACACTCCATGCGCTGCGCCACAGATGGCGTGCAGCGACGAGGG
CCGTTCGCTGTCGCGCGTAGTCGTGGACCTCGGCGCGGACCTAGCGCGTC
GGCCCAGCGTGCAGCGCACCATCATGCGCGAGCTCGGGCGCATGCCGCTG
CCGCCGTCGCTCATGGACTCGGACGACGAGGGGGACGATGATGAGGAGGG
GGAGGAGGAGGGGGAGGGGCGGGGGGAGGGGGAGGGGGGGCGAGGCTTCG
GCGGCGCTGAGGTGCGTGGCCGTGCCGTTACGTGGTCAGGTGTCTGTGCG
TAGGCGTTGAGTGCGTCTTTGCCTGGCTGTGCGATTGACTTATGTGTGTC
GGTATGCACAGCGCTCCCCCCCGCGTGAACTCTTACCGAGGAGGGTGCCT
ACTGCGAGAGTGACGGCGGGGGGGGGGGGGGGGGGGGAGGGGGGGGCTAA
AGTCGGGGGCAAAGCGTGGGCGCTGAGGTACGGAGGTGTGCATGTATGCG
TGCGGTGAGGAGCCGTCAAGCGCTGGATGACGGGCGTAGCGCATGCACAG
ACAGCACCACGATACATGACAGAGGGGTTGGCGAGAGATGGTGTGGTGGG
ACCACTGGCGGTGGAGGGAGAAGGAGCGAAAATCTGGTGCTCATGAATGT
GCAGCACAATGAAAGTACTTCGAGGTATAGAAGTTTGTCAATAGACGCGC
TACGGAAGCATGTCAACAGACACACTACGCACTGCCGACCGAAGCCATGA
AACACCAACCGCAATGCCGTCATTGGTAATGTGGAGTCGCTGCCTTCAGC
GCGGGGCTCTGGCACCAGATCCAATGAGATTGTTGAAATGATTCAGAGTC
GTGCGCATCGGTGCCGAGCTGCGTGTGAGCTTCTTGCCTTGGCACACACG
CAAGTCGAGCCCTGCATGCCGTGTGCCCGCTGCAGTGCGAGTGTGCGTCA
CATGTTGAAGTTGACGCTTGCTTGAGAGCATGCTGGCACTCGCGCTACCT
CACTGTCGACCTTCTGCATTCCCGCTGAAGTAATAGGCGCTCACTTGTGT
TTCTGCTGCTTCACCCCGCTCGCACCGCACAGCACTGCGAGTCAGTCCTG
CTCTCCGCTGGCGCAAAGCCATCAGCAGCGGCGCGTGCGCGGCTGCCCGG
CGTGAGCGACGAGGGCCTCAAGGAAGAGCTCCTGCGTAACGTTCAGGTGA
TTGCCTTAACCCTATGTACCTACCCCTAGCTCCAACCCTCGTCCCGAGGT
ATGAATGGTGAAGATGGATGGGAAGATACATGACTTCAAGCTGTGAGATA
GATACCGAAGTTGAAGTTGTACACGCAAGCGGAGCATTATCGGAAGACAG
CGCGTCGGGCGCCCCGCGTGCAAGACTGCGCAGCGCTCAGCAGCAGCGAT
GGCCACCGGCGCGTGGCGCCACGCGGCGGCGCGCGCTGCTGCTGCTGCTG
CTGTTGCTGCTGCTGCGCATTGACCAGTTCCGCAGTGGGAGCTCTGATTG
CGAACAGCACTACGTGCGAGGCTGCGTCGCCCTCCGCTGCGGCACTTCTT
CTGCGTCCCGCAAGCGGCCAAAACTGTGCTAATGAGCTGCCCTTATCCTG
CACCGTGAGCACTGCTACTACAGCTGAGCACTGGCACTTTTTTTTCTGCC
GCGCAGGACCGCGTCACAAAGCTCACGGAGAGCCTGGAGGCGATCCGCAG
GGAGAACCTGCACCTGCGCTCGCGCCTCACCACGACGGAGGCGGAGAAGG
TGAGCGGGGGCGACAGCGCATGGGGTATGTATGCATCAGGCATACGGTAT
GTACACGTGACGGCTTACACCAGAACTGCCACCTGCGCCCGCGCCTCACC
GCGACCGAGGCGGAGAAGGTGAGCGGGGGCGGCAGCGCATGGGGTACTGA
AGATACGGTATGAACGCGCAACGGCTTACACCAGAACTGGCGCTTGAATG
AGCGGCGTGACGTGCGCGCGCGCGTCGCCGCATCAGCTGCACCGCATGCC
ACAACGGCTGCACAAATGCGCTGCACGCAGTGCAGGCAACCGCCAACATG
AACGCCGCGCCGCGACGCTGACATTCCATCGATGGGAGGGTGACCGCACC
GCACACCAAGTCGGCGGCATGAAGCACGCCGCACGCATGCGCCTCCGCAC
GGCGCTGCGCAGGCGGCGCTGGCGCGGCAGCTGAGCGCGGGGGACGGCGG
CGAGGCGGGCCTCAAACAGAAGTAGAGACTCATGAGTCACAGCGCAACTG
CTCCCATCGAAAGGGCAGCATAGACACGGCATCATAGAGACAGAGCGACA
CGTGCATGCGCCCGCGCACCCCTGCAGGCGGCGCTGGCGCGGCAGCTGAG
CGCGGAGGACGGCGGCGTGGCGGAGGTCAAGGGCGCCGTGGACAAGGTTG
TGCGCGACCACCTCAGGAGCCAGCAGGAGGCGCGCGAGCTGTGGCGTGCG
GAGGGGGCGCGGGGGGCGGCAACGGCGGCGGCAGATGCAGGTGGGGGTTC
AAGGGCGGCCGTTACGCCCTCTCGTGCGCGAAACTGTCAAATACGCTTTC
TCGCATCACTGTCAAATACGCTTCTTCGCATAATTGTCAAATGATGCGAA
GCCGCAGCAGCAGAGAGCCGGAGGGGGCGCGGGGGGCGGCGGCAATGGCG
GCGGCGGATGCAGGTGGGGGCCCAGGGGGCGGCAGTTACGCCCTATCGCG
TAACTGTCGAATGCGTGGTCATAGAAGAGGGTGTCGCTGTGAGGCATTGG
CAGCGTGAAAGTGCCAGGAAGGGGGGGGCGAGCCCAGCTGCGCCGCGAGT
ATTTCGGGGGCCTGCGGCAGTCGTGGTCCAGGCGTGGCGCAGTGCGACGC
GCGTGGCTTTGGGCTGGGTGGCAGCCGTACGTACTCTCATGACAGGACCC
GTGACAGGACTGCGTAGATTGTCCAGATGTGCTGGCACAAGGGGAGGCTG
AAGCTGACCCTAACCCTAGTTGATGCGATTCCTCAGCGCTCAACTGCTTA
CATGCGCCGCTCGCTGCTCCTGTGCTGCCTCGCCAGAAGCGCGACCAGCG
AAGAGCTCTCGTCAGCAGCCGCCACAGAGTGGCCTGCCGCCGAGCAGCAA
GGAGGCGCGGCGCCGGCGCAGGCATATTTACAGGTATGTATCTATATATT
GACTTACTTCATGGTTAAGTTCATGCATATCTACAGGTCCATCGGCCGTG
CCCGCTTTGTGTGGTCACGATTGGCAGTGAGCTTGTTGAGGAGTAGGCAG
CTGAGTGAGATAGGGTGCACCGTGAATGCCATGCGATTTGCATTGTCTCA
TGTGGCCTGCAGCGGGTCTCCTACGTGTCACATGATTAGATTCTGGCACG
CAAGCACCTGTGCTGTGGAGCTCCCTCTGGCTCTGCCCTCAAGCCTTCTC
CCGCATACAATGCGAACCTTTGCGACCTGACGCTCTCAACTCCCCTCTTC
TCTGTTGCTGCTGGCAGGCTGGCGGCAGCAGGCGTCGCCAGTGTCATAGT
GGTCGCCGCAGTGGCGCTATACTTTGGCGTGAACCCTTTCCTGGCGTGCG
CAGTGGCGCCGGACGTCACAGCGACCGCCGCCACCGCCGCCGCCGCTGCC
GCCGCGGCGGCTAAGGGCGCGCGCAGCGCGTGGTCGTAAGGCAGTGCTCA
CGGCGACGGTAAATACTTCATCAGCTAGCTCAGCAGCAGCAGCAGCAGCA
GCAGGAGGCACTTTGTTGCGATGCCCACCTCGGCAACACATCACAATTAG
CGTGGTACAAAGCGGGGGGCGAGAGGCGCCAGGCAGGCAGGAGCGGAGGT
GCAGCAGCAGCAGCAGCGGCGGCAGCAGCGGCAGCGCATATAAGCCCGGC
GACTTGTGTGAAGAGAGTGCGCGGGGGGGGAGGGGCGATAACGAGACCTG
ACCAGTGTGGCGTGCAGTGAAGTGGGTTAACTGCCGCTTGTGTAGATGAA
TGGCCGCGCCGCGGACGGCGGCGCCTGTGCATACATAGCTCACCGCGAAG
CGAGTGGCAGCTGGGCTTCAGCGCAGCCCAGGGGCTGAAATACGGGGGGG
CGTTTTTCTAAAAGTGTGTATGGGGGGTTTTCAGGAGGCGGCAGAACTGC
GGTGCGGCGAGTTGCCCTTGCAGTTGGCGTGTGTGGTCGCAGGCCCTGTG
CGAGGCAACACAGGGTTTGCGGTCCTGGTAAAGCCGTTGTAAACTGGTGC
GCAGCA
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Coding sequence (CDS) from alignment at Contig_30:573109..579414+

>mRNA_5387 ID=mRNA_5387|Name=jgi.p|Trimin1|348733|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1248bp|location=Sequence derived from alignment at Contig_30:573109..579414+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTCGCAAGGCCGTGGAGGCGGCTGTCCCAGCGGCCTGCGCAGC
TATCCGCAACCGCATCCTGGGACCAGCGCTGGACCAGCTCTCGGACAGCG
CGTACGACGACGTCACCCCGCCGCACTCCTCCCCCTCTGACGGCAGCTGG
GTGGGGGGCAGCATGAGGGGGTCCGCTGAGACGTCACCGTTGAAGTGCGA
CGGGGAGCCACGCGGCGGCGCACGCGCGGGGGGGCGGGAGGGGGCGATGG
TGGCTCCGTTCTGGCCCGAGGACTCTTTCGCGCGGCTCGGCCAGCAGATG
GCGTGCAGCGAGGAGGGGCGGTCGCTGTCGCGCATGGTGATGGACCTCGG
CGCGGACCTCGCGCACATCACACTCGTGGACCTCGGCGCGGACCTAGCGC
GTCGGCCCAGCGTGCAGCGCACCATCATGCGCGAGCTCGGGCGCATGCCG
CTGCCGCCGTCGCTCATGGACTCGGACGACGAGGGGGACGATGATGAGGA
GGGGGAGGAGGAGGGGGAGGGGCGGGGGGAGGGGGAGGGGGGGCGAGGCT
TCGGCGGCGCTGAGCACTGCGAGTCAGTCCTGCTCTCCGCTGGCGCAAAG
CCATCAGCAGCGGCGCGTGCGCGGCTGCCCGGCGTGAGCGACGAGGGCCT
CAAGGAAGAGCTCCTGCGTAACGTTCAGGACCGCGTCACAAAGCTCACGG
AGAGCCTGGAGGCGATCCGCAGGGAGAACCTGCACCTGCGCTCGCGCCTC
ACCACGACGGAGGCGGAGAAGAACTGCCACCTGCGCCCGCGCCTCACCGC
GACCGAGGCGGAGAAGGCGGCGCTGGCGCGGCAGCTGAGCGCGGAGGACG
GCGGCGTGGCGGAGGTCAAGGGCGCCGTGGACAAGGTTGTGCGCGACCAC
CTCAGGAGCCAGCAGGAGGCGCGCGAGCTGTGGCGTGCGGAGGGGGCGCG
GGGGGCGGCAACGGCGGCGGCAGATGCAGAAGCGCGACCAGCGAAGAGCT
CTCGTCAGCAGCCGCCACAGAGTGGCCTGCCGCCGAGCAGCAAGGAGGCG
CGGCGCCGGCGCAGGCATATTTACAGGCTGGCGGCAGCAGGCGTCGCCAG
TGTCATAGTGGTCGCCGCAGTGGCGCTATACTTTGGCGTGAACCCTTTCC
TGGCGTGCGCAGTGGCGCCGGACGTCACAGCGACCGCCGCCACCGCCGCC
GCCGCTGCCGCCGCGGCGGCTAAGGGCGCGCGCAGCGCGTGGTCGTAA
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